iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ncr-068891

Ensembl Protein ID

EAA32056

UniProt Accession

Q1K7L8; Q1K7L8_NEUCR

Genbank Protein ID

EAA32056.3

Protein Name

Transcription initiation factor TFIID subunit

Genbank Nucleotide ID

CM002240

Gene Name

NCU04136

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
NCU04136	EAA32056	EAA32056

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.10e-34	116.0	549	589
UBD/Beta-Prp	2.10e-51	173.9	389	668

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdD..gtikvWDlrtgvllk 37
           gH  +++++a+ ++ t++ s+sdD  ++i++W++ tg++++
   Q: 549  GHDTPISAIAWhPNgTYIFSASDDtdKSIRMWSVVTGNCVR 589
           7999********777*******7777************986 PP

UBD/Beta-Prp

   S: 7    ghhksvitcvkfspdksllatgsrdgtikvwdvttgkl.............lrslsgheae....................vtavkfspdgkilvtgseDr 74
           ++  + ++c++fs+d +l+a+g +d+ i+vw++  + l              r+l gh+++                        k + ++k+lv++s D+
   Q: 389  HNSLGSVSCMDFSNDHELVAVGTMDSYIRVWSMNGKPLrssvasekdlqvnNRKLIGHSGPvygvsfsdsianldrnvfpeADGAKPDTSTKLLVSCSADG 489
           556678999**************************999999999999888888888888887777777777777777776677777777777********* PP
   S: 75   tikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGsl..DrtvrlWdlktgkllr 173
            +++w+l+   c+ ++k+h+  v  + + p g+++++G++d+t+rv+  +  + l+ +  ghd  ++ +++hp+g +++s+s+  D+ +r+W++ tg+++r
   Q: 490  QVRLWSLDHWACLCIYKAHDGPVFRVLWGPHGHYFATGGWDKTVRVFAQDRASALR-IMVGHDTPISAIAWHPNGTYIFSASDdtDKSIRMWSVVTGNCVR 589
           *******************************************************9.*************************722579************* PP
   S: 174  tltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnght.dnvksvrfspnderlvsgssDgsiriWdlr 252
            +tg htd++  l+  +ngk l+s+++ g + +wd+ +g  +++++gh    + s+ fs +++ lvsg+ Dg++r+Wd++
   Q: 590  IFTG-HTDYISALQCAPNGKILASADTGGNIFFWDIAKGARIKRCRGHGkGGIPSLSFSAESNVLVSGGLDGTVRLWDVE 668
           ***9.******************************************964789************************986 PP

Organism

Neurospora crassa

Protein Sequence
(Fasta)

MSNPPPANTG QAPGGATYGG GQQHQQPQST TGGAPTTGGT GGTGAAGTTS TSSTAPTPQN 60
LNQIVTDYLK KKGFTKTEAV FRQETAHLGP DGRPAQRNEE NGPRKYLKAF ILLRDWIENN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTCCACTTCC ACTTGGACGG GCACTGACCT GGACCTCGTC ATCTCCGTCT TTTCTTGAGC 60
CTCATTATCA ATCTCGCCCT TTCCCGTAAA ACAGACGCTA TCATTATACA GGCAGCCAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR006594--LisH
IPR007582--TFIID_NTD2
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08513--LisH
PF04494--TFIID_NTD2
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0000124--C:SAGA complex
GO:0046695--C:SLIK (SAGA-like) complex
GO:0005669--C:transcription factor TFIID complex
GO:0003682--F:chromatin binding
GO:0003743--F:translation initiation factor activity
GO:0016573--P:histone acetylation
GO:0006366--P:transcription from RNA polymerase II promoter

KEGG

ncr:NCU04136

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000261	Aegilops tauschii	42.05	2.00e-39	155.00
IUUC-Aml-001607	Ailuropoda melanoleuca	30.05	2.00e-74	271.00
IUUC-Atr-003136	Amborella trichopoda	35.09	8.00e-53	199.00
IUUC-Apl-004193	Anas platyrhynchos	31.19	1.00e-73	268.00
IUUC-Aca-004522	Anolis carolinensis	30.05	4.00e-75	274.00
IUUC-Aly-006476	Arabidopsis lyrata	29.86	9.00e-67	246.00
IUUC-Ath-006587	Arabidopsis thaliana	29.00	5.00e-66	243.00
IUUC-Ago-007736	Ashbya gossypii	45.85	2.00e-83	301.00
IUUC-Afl-008659	Aspergillus flavus	47.39	0.00e+00	675.00
IUUC-Afu-008902	Aspergillus fumigatus	49.52	5.00e-179	619.00
IUUC-Ani-009462	Aspergillus nidulans	47.50	1.00e-144	504.00
IUUC-Aor-010083	Aspergillus oryzae	47.26	0.00e+00	674.00
IUUC-Ate-010271	Aspergillus terreus	47.14	0.00e+00	659.00
IUUC-Ame-010721	Astyanax mexicanus	30.56	7.00e-74	270.00
IUUC-Bgr-012257	Blumeria graminis	55.48	0.00e+00	672.00
IUUC-Bta-013539	Bos taurus	29.88	9.00e-74	270.00
IUUC-Bci-013737	Botrytis cinerea	52.52	0.00e+00	795.00
IUUC-Bdi-015041	Brachypodium distachyon	34.88	3.00e-46	178.00
IUUC-Bol-015483	Brassica oleracea	29.41	2.00e-67	248.00
IUUC-Bra-017147	Brassica rapa	29.56	1.00e-67	249.00
IUUC-Cel-018451	Caenorhabditis elegans	25.88	2.00e-38	152.00
IUUC-Cja-018881	Callithrix jacchus	30.39	3.00e-74	271.00
IUUC-Cfa-020056	Canis familiaris	30.05	2.00e-74	271.00
IUUC-Cpo-021454	Cavia porcellus	29.88	8.00e-76	276.00
IUUC-Cre-022736	Chlamydomonas reinhardtii	28.53	3.00e-32	131.00
IUUC-Csa-023045	Chlorocebus sabaeus	30.31	2.00e-72	264.00
IUUC-Cho-024284	Choloepus hoffmanni	35.88	1.00e-47	182.00
IUUC-Cin-025457	Ciona intestinalis	39.83	2.00e-45	174.00
IUUC-Csv-025882	Ciona savignyi	35.83	4.00e-57	214.00
IUUC-Cgl-026392	Colletotrichum gloeosporioides	67.96	0.00e+00	1038.00
IUUC-Cne-026876	Cryptococcus neoformans	31.68	1.00e-75	275.00
IUUC-Cme-027302	Cyanidioschyzon merolae	37.37	9.00e-50	189.00
IUUC-Dre-027980	Danio rerio	30.85	1.00e-74	272.00
IUUC-Dno-028863	Dasypus novemcinctus	30.39	8.00e-74	270.00
IUUC-Dor-030561	Dipodomys ordii	30.39	3.00e-74	271.00
IUUC-Dse-031547	Dothistroma septosporum	43.43	3.00e-147	513.00
IUUC-Dme-031917	Drosophila melanogaster	31.32	2.00e-50	192.00
IUUC-Ete-032712	Echinops telfairi	38.16	1.00e-41	162.00
IUUC-Eca-033927	Equus caballus	30.05	4.00e-76	277.00
IUUC-Eeu-034449	Erinaceus europaeus	29.83	3.00e-62	231.00
IUUC-Fca-036325	Felis catus	30.39	4.00e-74	271.00
IUUC-Fal-036604	Ficedula albicollis	30.39	6.00e-75	273.00
IUUC-Fox-038049	Fusarium oxysporum	65.59	0.00e+00	827.00
IUUC-Fso-038302	Fusarium solani	70.27	0.00e+00	913.00
IUUC-Gmo-038832	Gadus morhua	29.59	8.00e-72	263.00
IUUC-Ggr-039878	Gaeumannomyces graminis	68.10	0.00e+00	1058.00
IUUC-Gga-041147	Gallus gallus	30.56	7.00e-76	276.00
IUUC-Gac-041373	Gasterosteus aculeatus	31.02	7.00e-72	263.00
IUUC-Gma-043230	Glycine max	31.00	1.00e-73	269.00
IUUC-Ggo-044568	Gorilla gorilla	31.68	2.00e-41	162.00
IUUC-Hsa-045971	Homo sapiens	30.39	3.00e-74	271.00
IUUC-Hvu-047695	Hordeum vulgare	34.88	5.00e-45	173.00
IUUC-Itr-048400	Ictidomys tridecemlineatus	30.05	2.00e-74	272.00
IUUC-Kpa-049402	Komagataella pastoris	34.73	2.00e-107	381.00
IUUC-Lch-049526	Latimeria chalumnae	28.35	3.00e-64	237.00
IUUC-Lpe-051560	Leersia perrieri	33.92	7.00e-50	190.00
IUUC-Loc-052882	Lepisosteus oculatus	30.90	4.00e-76	277.00
IUUC-Lma-053212	Leptosphaeria maculans	43.05	2.00e-147	514.00
IUUC-Laf-053859	Loxodonta africana	30.05	3.00e-74	271.00
IUUC-Mcc-054957	Macaca mulatta	36.36	5.00e-62	229.00
IUUC-Meu-056182	Macropus eugenii	31.17	2.00e-41	161.00
IUUC-Mor-057024	Magnaporthe oryzae	73.68	0.00e+00	972.00
IUUC-Mpo-057520	Magnaporthe poae	69.71	0.00e+00	1013.00
IUUC-Mtr-058754	Medicago truncatula	30.15	5.00e-76	276.00
IUUC-Mla-058881	Melampsora laricipopulina	35.91	2.00e-60	225.00
IUUC-Mga-059776	Meleagris gallopavo	30.56	4.00e-76	276.00
IUUC-Mvi-060208	Microbotryum violaceum	25.79	4.00e-55	207.00
IUUC-Mmr-061783	Microcebus murinus	36.36	5.00e-62	229.00
IUUC-Mdo-062856	Monodelphis domestica	30.56	9.00e-75	273.00
IUUC-Mmu-064218	Mus musculus	30.05	1.00e-74	272.00
IUUC-Mac-064886	Musa acuminata	42.26	1.00e-38	153.00
IUUC-Mpu-065735	Mustela putorius furo	30.05	2.00e-74	271.00
IUUC-Mlu-067544	Myotis lucifugus	30.00	1.00e-72	265.00
IUUC-Nfi-068502	Neosartorya fischeri	49.52	4.00e-179	619.00
IUUC-Nle-069389	Nomascus leucogenys	30.39	3.00e-74	271.00
IUUC-Opr-071042	Ochotona princeps	33.44	3.00e-52	197.00
IUUC-Ont-071455	Oreochromis niloticus	38.68	5.00e-65	240.00
IUUC-Oan-073181	Ornithorhynchus anatinus	30.22	1.00e-73	268.00
IUUC-Ocu-073758	Oryctolagus cuniculus	30.10	1.00e-76	279.00
IUUC-Oba-075739	Oryza barthii	33.33	3.00e-42	164.00
IUUC-Obr-076111	Oryza brachyantha	33.73	3.00e-51	194.00
IUUC-Ogl-077914	Oryza glaberrima	32.48	4.00e-43	167.00
IUUC-Ogu-078190	Oryza glumaepatula	37.40	1.00e-44	172.00
IUUC-Oin-079473	Oryza indica	33.63	6.00e-46	177.00
IUUC-Olo-080645	Oryza longistaminata	42.70	3.00e-41	160.00
IUUC-Ome-081831	Oryza meridionalis	41.81	3.00e-39	154.00
IUUC-Oni-082431	Oryza nivara	39.91	1.00e-44	172.00
IUUC-Opu-083239	Oryza punctata	41.81	5.00e-39	154.00
IUUC-Oru-085154	Oryza rufipogon	39.91	3.00e-44	171.00
IUUC-Osa-086189	Oryza sativa	33.63	7.00e-46	176.00
IUUC-Ola-086574	Oryzias latipes	31.53	1.00e-77	282.00
IUUC-Olu-087616	Ostreococcus lucimarinus	35.23	5.00e-52	197.00
IUUC-Oga-088827	Otolemur garnettii	30.05	2.00e-74	271.00
IUUC-Oar-089648	Ovis aries	29.88	9.00e-74	270.00
IUUC-Ptr-091195	Pan troglodytes	30.39	2.00e-74	271.00
IUUC-Pan-091978	Papio anubis	30.22	1.00e-73	269.00
IUUC-Psi-093598	Pelodiscus sinensis	30.35	2.00e-67	248.00
IUUC-Pma-094593	Petromyzon marinus	31.25	1.00e-36	145.00
IUUC-Pno-094823	Phaeosphaeria nodorum	47.75	5.00e-140	489.00
IUUC-Ppa-095455	Physcomitrella patens	28.55	1.00e-67	248.00
IUUC-Pfo-097120	Poecilia formosa	31.69	1.00e-72	265.00
IUUC-Pab-098771	Pongo abelii	30.39	2.00e-74	271.00
IUUC-Pop-099542	Populus trichocarpa	29.22	3.00e-70	257.00
IUUC-Pca-100727	Procavia capensis	37.25	1.00e-42	166.00
IUUC-Ppe-101686	Prunus persica	30.40	1.00e-70	259.00
IUUC-Pva-102414	Pteropus vampyrus	28.01	7.00e-59	220.00
IUUC-Pgr-103603	Puccinia graminis	28.20	3.00e-72	264.00
IUUC-Ptt-103995	Puccinia triticina	26.95	2.00e-54	206.00
IUUC-Pte-104359	Pyrenophora teres	48.86	5.00e-151	526.00
IUUC-Pyt-104523	Pyrenophora triticirepentis	48.86	1.00e-150	525.00
IUUC-Rno-105064	Rattus norvegicus	30.05	1.00e-74	272.00
IUUC-Sce-106186	Saccharomyces cerevisiae	30.83	2.00e-99	354.00
IUUC-Sha-106582	Sarcophilus harrisii	30.39	7.00e-75	273.00
IUUC-Sja-107683	Schizosaccharomyces japonicus	36.86	3.00e-117	413.00
IUUC-Spo-108142	Schizosaccharomyces pombe	37.13	2.00e-113	401.00
IUUC-Ssl-108456	Sclerotinia sclerotiorum	52.97	0.00e+00	776.00
IUUC-Smo-109097	Selaginella moellendorffii	32.21	2.00e-76	278.00
IUUC-Sit-109804	Setaria italica	28.15	3.00e-64	238.00
IUUC-Sly-111693	Solanum lycopersicum	30.59	7.00e-70	256.00
IUUC-Sar-113381	Sorex araneus	30.22	3.00e-46	177.00
IUUC-Sbi-114849	Sorghum bicolor	28.11	4.00e-65	241.00
IUUC-Sre-114945	Sporisorium reilianum	34.59	2.00e-60	225.00
IUUC-Ssc-115582	Sus scrofa	36.62	4.00e-61	227.00
IUUC-Tgu-116899	Taeniopygia guttata	30.73	2.00e-74	271.00
IUUC-Tru-118011	Takifugu rubripes	31.36	1.00e-70	259.00
IUUC-Tsy-119622	Tarsius syrichta	26.97	3.00e-25	108.00
IUUC-Tni-120598	Tetraodon nigroviridis	37.85	3.00e-63	234.00
IUUC-Tca-121247	Theobroma cacao	28.55	3.00e-70	258.00
IUUC-Tre-121949	Trichoderma reesei	67.36	0.00e+00	845.00
IUUC-Tvi-122626	Trichoderma virens	62.42	0.00e+00	938.00
IUUC-Tae-125816	Triticum aestivum	35.22	4.00e-47	181.00
IUUC-Tur-126316	Triticum urartu	42.05	5.00e-40	157.00
IUUC-Tme-126904	Tuber melanosporum	47.13	2.00e-86	311.00
IUUC-Tbe-127254	Tupaia belangeri	27.50	8.00e-59	219.00
IUUC-Ttr-128544	Tursiops truncatus	30.39	4.00e-74	270.00
IUUC-Uma-129379	Ustilago maydis	33.92	6.00e-59	221.00
IUUC-Vda-129761	Verticillium dahliae	68.17	0.00e+00	867.00
IUUC-Vpa-130485	Vicugna pacos	30.39	3.00e-74	271.00
IUUC-Vvi-131171	Vitis vinifera	29.05	8.00e-71	259.00
IUUC-Xtr-132762	Xenopus tropicalis	26.62	3.00e-54	204.00
IUUC-Xma-133583	Xiphophorus maculatus	31.69	1.00e-72	265.00
IUUC-Yli-134446	Yarrowia lipolytica	37.25	1.00e-108	385.00
IUUC-Zma-135722	Zea mays	33.53	1.00e-45	176.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence