iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
RAID2
Post-translational Modifications (PTMs)
CPLM	dbPAF
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.80e-09	38.0	2983	3014

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           gHt  vtcl    +  llvsGs D+t+++WDl
   Q: 2983 GHTQAVTCLTAsVTfSLLVSGSQDCTCMLWDL 3014
           8*******854433469**************8 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MEAEDCSKAE DRPEDPGFQN EGQSSAVKPT FSLEEQSPGP TVLWDMLEQK FLEYQQLIHK 60
NPEERRRNLL SLLPLFLKAW EHSVGIICFR SLQRLAEDVS DQLAQEIQQA LSGKPAEQAR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGTGATTCAT AATGAAACAC TGTTGTTGAT GGCTGCCATG CGAGGCCAGG TCCTCGTTCT 60
GTTCCCCTGA GCTGAGCCAC TGGAGCCTGG GGATGGAGGC ACCCACACCA TGTGACATCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000409--BEACH_dom
IPR013320--ConA-like_dom
IPR023362--PH-BEACH_dom
IPR011993--PH_dom-like
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50197--BEACH
PS51783--PH_BEACH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF02138--Beach
PF14844--PH_BEACH
PF00400--WD40

SMART

SM01026--Beach
SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001827	Ailuropoda melanoleuca	84.63	0.00e+00	1450.00
IUUC-Bta-013119	Bos taurus	77.99	0.00e+00	4826.00
IUUC-Cja-019166	Callithrix jacchus	79.44	0.00e+00	4920.00
IUUC-Cfa-021196	Canis familiaris	78.25	0.00e+00	4891.00
IUUC-Cpo-021853	Cavia porcellus	78.37	0.00e+00	2870.00
IUUC-Cho-024719	Choloepus hoffmanni	64.55	0.00e+00	745.00
IUUC-Dre-028733	Danio rerio	42.53	0.00e+00	2362.00
IUUC-Dno-028965	Dasypus novemcinctus	74.26	0.00e+00	4457.00
IUUC-Dor-030745	Dipodomys ordii	72.47	0.00e+00	1108.00
IUUC-Ete-032877	Echinops telfairi	65.41	0.00e+00	1605.00
IUUC-Eca-034106	Equus caballus	79.78	0.00e+00	2976.00
IUUC-Fca-036341	Felis catus	79.38	0.00e+00	3550.00
IUUC-Fal-036739	Ficedula albicollis	50.31	0.00e+00	2067.00
IUUC-Gmo-039386	Gadus morhua	36.41	0.00e+00	790.00
IUUC-Gga-041220	Gallus gallus	56.60	0.00e+00	3421.00
IUUC-Gac-041289	Gasterosteus aculeatus	39.13	0.00e+00	2021.00
IUUC-Ggo-045630	Gorilla gorilla	80.39	0.00e+00	4961.00
IUUC-Hsa-046627	Homo sapiens	80.24	0.00e+00	4961.00
IUUC-Itr-048709	Ictidomys tridecemlineatus	80.65	0.00e+00	5020.00
IUUC-Lch-049803	Latimeria chalumnae	50.25	0.00e+00	1731.00
IUUC-Loc-052606	Lepisosteus oculatus	44.96	0.00e+00	2470.00
IUUC-Mcc-055003	Macaca mulatta	80.71	0.00e+00	4996.00
IUUC-Mga-059475	Meleagris gallopavo	33.19	9.00e-100	360.00
IUUC-Mmr-060933	Microcebus murinus	78.25	0.00e+00	4862.00
IUUC-Mdo-061823	Monodelphis domestica	68.09	0.00e+00	2466.00
IUUC-Mmu-064029	Mus musculus	92.12	0.00e+00	5734.00
IUUC-Mpu-065681	Mustela putorius furo	78.59	0.00e+00	4877.00
IUUC-Nle-069676	Nomascus leucogenys	80.19	0.00e+00	4970.00
IUUC-Ont-072509	Oreochromis niloticus	40.10	0.00e+00	2047.00
IUUC-Ocu-074714	Oryctolagus cuniculus	78.01	0.00e+00	4838.00
IUUC-Ola-087135	Oryzias latipes	38.35	0.00e+00	1897.00
IUUC-Oga-087927	Otolemur garnettii	76.85	0.00e+00	4760.00
IUUC-Oar-089783	Ovis aries	77.59	0.00e+00	4769.00
IUUC-Pan-092402	Papio anubis	80.62	0.00e+00	4984.00
IUUC-Psi-093913	Pelodiscus sinensis	54.79	0.00e+00	3147.00
IUUC-Pfo-096036	Poecilia formosa	40.07	0.00e+00	2118.00
IUUC-Pab-097718	Pongo abelii	77.91	0.00e+00	2141.00
IUUC-Pva-102690	Pteropus vampyrus	80.10	0.00e+00	2378.00
IUUC-Sha-107025	Sarcophilus harrisii	65.42	0.00e+00	4077.00
IUUC-Ssc-115874	Sus scrofa	70.12	0.00e+00	2820.00
IUUC-Tgu-116983	Taeniopygia guttata	61.99	0.00e+00	1226.00
IUUC-Tru-118108	Takifugu rubripes	39.18	0.00e+00	1960.00
IUUC-Tsy-118938	Tarsius syrichta	64.69	0.00e+00	1208.00
IUUC-Tbe-127325	Tupaia belangeri	71.69	0.00e+00	1525.00
IUUC-Ttr-128788	Tursiops truncatus	76.39	0.00e+00	2767.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence