iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sit-110551

Ensembl Protein ID

Si029128m

UniProt Accession

K3ZR98; K3ZR98_SETIT

Genbank Protein ID

KQL23388.1

Protein Name

Ribosome biogenesis protein BOP1 homolog

Genbank Nucleotide ID

CM003529

Gene Name

LOC101766981; SETIT_029128mg

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Si029128m.g	Si029128m	Si029128m
Si029128m.g	Si029219m	Si029219m

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.70e-14	52.4	345	383

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllk 37
           gH+++v +++   ++  l+sGs Dgti+vW++ tg++lk
   Q: 345  GHEGPVKSVSVemTGQWLASGSSDGTIRVWEVETGRCLK 383
           8********99887789********************97 PP

Organism

Setaria italica

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MGHNEREHEH EGDDLSADDS SWSDGVWSED DGEDSVSFED SGEGSGSDAE SDEAVAEESD 60
SSEDEVAPRN TVGDVPLEWY KDEEHIGYDI DGRKIKKRDR EGRIEAYLRN ADDAKNWRKI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGGCCACA ACGAGAGGGA GCACGAGCAC GAGGGCGATG ACCTATCTGC CGACGACTCT 60
TCCTGGAGCG ACGGCGTCTG GTCCGAGGAC GACGGCGAGG TGAGAGAGTT TCTGATGCCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

sita:101766981

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	80.37	0.00e+00	947.00
IUUC-Aml-001507	Ailuropoda melanoleuca	42.44	2.00e-135	475.00
IUUC-Apl-003545	Anas platyrhynchos	42.61	4.00e-127	447.00
IUUC-Aly-005649	Arabidopsis lyrata	65.14	0.00e+00	845.00
IUUC-Ath-007625	Arabidopsis thaliana	62.63	0.00e+00	827.00
IUUC-Ago-007958	Ashbya gossypii	40.15	7.00e-138	483.00
IUUC-Acl-008344	Aspergillus clavatus	41.27	2.00e-122	432.00
IUUC-Afl-008616	Aspergillus flavus	38.78	6.00e-123	434.00
IUUC-Ame-011767	Astyanax mexicanus	45.72	3.00e-69	254.00
IUUC-Bgr-012286	Blumeria graminis	41.65	9.00e-140	490.00
IUUC-Bta-013569	Bos taurus	44.98	1.00e-148	519.00
IUUC-Bci-013820	Botrytis cinerea	41.31	1.00e-129	456.00
IUUC-Bdi-014895	Brachypodium distachyon	89.07	0.00e+00	1123.00
IUUC-Cel-018201	Caenorhabditis elegans	40.23	1.00e-125	443.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	49.84	6.00e-171	593.00
IUUC-Csa-023440	Chlorocebus sabaeus	42.84	3.00e-152	531.00
IUUC-Csv-026352	Ciona savignyi	42.90	6.00e-147	513.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	36.38	6.00e-106	377.00
IUUC-Cne-027004	Cryptococcus neoformans	43.01	2.00e-151	528.00
IUUC-Cme-027242	Cyanidioschyzon merolae	35.61	1.00e-107	383.00
IUUC-Dre-028658	Danio rerio	45.76	2.00e-163	569.00
IUUC-Dno-028883	Dasypus novemcinctus	45.34	6.00e-151	527.00
IUUC-Dor-031031	Dipodomys ordii	42.20	8.00e-150	523.00
IUUC-Dse-031443	Dothistroma septosporum	38.35	3.00e-123	435.00
IUUC-Eca-033677	Equus caballus	44.75	4.00e-147	514.00
IUUC-Eeu-035310	Erinaceus europaeus	41.07	6.00e-111	394.00
IUUC-Fca-035888	Felis catus	43.13	2.00e-143	501.00
IUUC-Fal-037438	Ficedula albicollis	45.76	1.00e-131	462.00
IUUC-Fso-038187	Fusarium solani	40.36	4.00e-139	488.00
IUUC-Gga-040631	Gallus gallus	48.97	2.00e-94	338.00
IUUC-Gac-042582	Gasterosteus aculeatus	43.03	1.00e-144	506.00
IUUC-Gma-044215	Glycine max	65.53	0.00e+00	863.00
IUUC-Ggo-045587	Gorilla gorilla	44.21	2.00e-151	528.00
IUUC-Hsa-046319	Homo sapiens	44.21	2.00e-151	528.00
IUUC-Hvu-047526	Hordeum vulgare	82.23	0.00e+00	1058.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	44.01	5.00e-148	517.00
IUUC-Lch-049640	Latimeria chalumnae	45.88	4.00e-167	580.00
IUUC-Lpe-051135	Leersia perrieri	85.29	0.00e+00	1013.00
IUUC-Lma-053290	Leptosphaeria maculans	41.91	2.00e-128	452.00
IUUC-Mcc-055471	Macaca mulatta	42.47	3.00e-152	531.00
IUUC-Meu-056190	Macropus eugenii	45.34	1.00e-148	519.00
IUUC-Mor-057135	Magnaporthe oryzae	39.83	1.00e-136	479.00
IUUC-Mtr-058689	Medicago truncatula	61.49	0.00e+00	808.00
IUUC-Mla-059149	Melampsora laricipopulina	42.48	3.00e-141	494.00
IUUC-Mga-059645	Meleagris gallopavo	43.95	6.00e-56	209.00
IUUC-Mmr-061674	Microcebus murinus	44.66	4.00e-147	514.00
IUUC-Mdo-062973	Monodelphis domestica	43.37	2.00e-153	536.00
IUUC-Mmu-064180	Mus musculus	42.54	3.00e-151	528.00
IUUC-Mac-064535	Musa acuminata	66.60	0.00e+00	672.00
IUUC-Mpu-066406	Mustela putorius furo	44.86	2.00e-153	535.00
IUUC-Mlu-067795	Myotis lucifugus	42.68	1.00e-141	496.00
IUUC-Nfi-068516	Neosartorya fischeri	39.03	6.00e-113	400.00
IUUC-Ncr-068767	Neurospora crassa	40.71	2.00e-129	456.00
IUUC-Opr-071084	Ochotona princeps	44.52	1.00e-60	226.00
IUUC-Ont-071614	Oreochromis niloticus	43.56	3.00e-154	538.00
IUUC-Oba-075980	Oryza barthii	83.16	0.00e+00	1021.00
IUUC-Ome-081716	Oryza meridionalis	68.77	0.00e+00	799.00
IUUC-Oni-082508	Oryza nivara	81.87	0.00e+00	1024.00
IUUC-Ola-087361	Oryzias latipes	46.43	5.00e-160	557.00
IUUC-Oar-090058	Ovis aries	34.33	9.00e-51	194.00
IUUC-Pan-092306	Papio anubis	42.71	9.00e-152	530.00
IUUC-Pno-094794	Phaeosphaeria nodorum	38.29	1.00e-118	420.00
IUUC-Pfo-096682	Poecilia formosa	44.72	1.00e-158	553.00
IUUC-Pab-097939	Pongo abelii	44.19	3.00e-137	481.00
IUUC-Pop-099043	Populus trichocarpa	69.45	0.00e+00	816.00
IUUC-Pca-100333	Procavia capensis	43.96	6.00e-148	517.00
IUUC-Ppe-102078	Prunus persica	62.96	0.00e+00	818.00
IUUC-Pgr-103525	Puccinia graminis	42.48	4.00e-132	464.00
IUUC-Ptt-103929	Puccinia triticina	42.24	7.00e-127	447.00
IUUC-Pte-104029	Pyrenophora teres	41.76	3.00e-139	488.00
IUUC-Pyt-104446	Pyrenophora triticirepentis	41.73	9.00e-140	490.00
IUUC-Rno-105248	Rattus norvegicus	44.88	3.00e-149	521.00
IUUC-Sce-106381	Saccharomyces cerevisiae	38.95	2.00e-136	479.00
IUUC-Sha-106519	Sarcophilus harrisii	46.23	3.00e-154	537.00
IUUC-Spo-108071	Schizosaccharomyces pombe	40.70	6.00e-131	460.00
IUUC-Smo-109604	Selaginella moellendorffii	59.28	0.00e+00	744.00
IUUC-Sly-110970	Solanum lycopersicum	66.75	8.00e-153	533.00
IUUC-Stu-112593	Solanum tuberosum	65.62	0.00e+00	905.00
IUUC-Sar-113123	Sorex araneus	42.45	2.00e-63	234.00
IUUC-Sre-115188	Sporisorium reilianum	40.27	2.00e-130	459.00
IUUC-Tru-117685	Takifugu rubripes	46.41	9.00e-160	556.00
IUUC-Tni-119982	Tetraodon nigroviridis	45.98	4.00e-154	537.00
IUUC-Tca-121664	Theobroma cacao	65.94	0.00e+00	917.00
IUUC-Tae-125703	Triticum aestivum	85.69	0.00e+00	1047.00
IUUC-Tur-126781	Triticum urartu	80.20	0.00e+00	927.00
IUUC-Tme-127080	Tuber melanosporum	44.32	6.00e-152	530.00
IUUC-Vda-129715	Verticillium dahliae	41.48	8.00e-136	477.00
IUUC-Vvi-131211	Vitis vinifera	64.60	0.00e+00	850.00
IUUC-Xma-133883	Xiphophorus maculatus	44.66	2.00e-153	535.00
IUUC-Yli-134438	Yarrowia lipolytica	39.46	7.00e-126	444.00
IUUC-Zma-135341	Zea mays	80.22	0.00e+00	1123.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence