iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pyt-104794

Ensembl Protein ID

EDU45599

UniProt Accession

B2W086; B2W086_PYRTR

Genbank Protein ID

EDU45599.1

Protein Name

Coatomer subunit beta'

Genbank Nucleotide ID

DS231616

Gene Name

PTRG_03076

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PTRG_03076	EDU45599	EDU45599

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.10e-26	91.1	198	229
UBD/Beta-Prp	7.20e-61	205.2	46	307

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 6    vtclaf...sd.tllvsGsdDgtikvWDlrtg 33
           v+ +++   sd ++l++ sdD t+kvWD++t 
   Q: 198  VNFIDYypqSDkPYLLTTSDDRTVKVWDYTTK 229
           455555899999****************9986 PP

UBD/Beta-Prp

   S: 32   gtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleet 132
           g + +w++ t++ +++++  + +v+a +f+ +++++v gs+D +++v++++t++ v ++++h d++++++++p++ +++++s+d ti++wd+++ ++  + 
   Q: 46   GHVHIWSYITQSIVKTFELTDVPVRAGRFIARKNWIVAGSDDFHLRVYNYNTSEKVTSFEAHPDYIRAIAVHPTQPFVLTASDDMTIKLWDWDKSWKCVQE 146
           6899*****************************************************************************************9998888* PP
   S: 133  lsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsng..kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrf 230
           ++gh++ v++++++p++ n ++s++lDrtv++W+l + +  +tl+    + v+ +++ +++  ++l++ s+d+tvk+wd+ t+  + tl+ght+nv+    
   Q: 147  FAGHQHYVMGIAINPKDpNTFASACLDRTVKIWSLGSSTPNYTLEAHEAKGVNFIDYYPQSdkPYLLTTSDDRTVKVWDYTTKALIATLEGHTSNVSFAVY 247
           *********************************************988999*****9988888************************************** PP
   S: 231  spnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvni 291
           +p+   ++sgs+Dg+i+iW + +  l ++l++  ++ ++va+ + g+n ++lg +d+ v i
   Q: 248  HPELPVIISGSEDGTIKIWHSSTYRLEQSLNYGLERAWCVAY-QKGKNGVALGFDDGAVVI 307
           ******************************************.888999988888887766 PP

Organism

Pyrenophora triticirepentis

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Protein Sequence
(Fasta)

MRLDVKASVG IALSLDIYTT ETHQRLSPDR AMDPHDLVQR ALTQAGHVHI WSYITQSIVK 60
TFELTDVPVR AGRFIARKNW IVAGSDDFHL RVYNYNTSEK VTSFEAHPDY IRAIAVHPTQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCGTTTGG ACGTCAAGGT ACGCAACAAT GCGCAATTGG AGGGCGGTGC AGTATTCGGA 60
CATGGCTAAT CTGTCTGCGA CTATAGAGGC AGCTTTTTGC GCGGTCTGAG CGTGTCAAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0005829--C:cytosol
GO:0000139--C:Golgi membrane
GO:0005634--C:nucleus
GO:0005198--F:structural molecule activity
GO:0006888--P:ER to Golgi vesicle-mediated transport
GO:0006886--P:intracellular protein transport
GO:0032511--P:late endosome to vacuole transport via multivesicular body sorting pathway
GO:0006890--P:retrograde vesicle-mediated transport, Golgi to ER

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000654	Aegilops tauschii	48.71	0.00e+00	753.00
IUUC-Aml-002154	Ailuropoda melanoleuca	54.92	0.00e+00	934.00
IUUC-Atr-003090	Amborella trichopoda	55.59	0.00e+00	848.00
IUUC-Apl-003976	Anas platyrhynchos	55.11	0.00e+00	928.00
IUUC-Aca-004301	Anolis carolinensis	55.50	0.00e+00	936.00
IUUC-Aly-005643	Arabidopsis lyrata	52.86	0.00e+00	847.00
IUUC-Ath-007630	Arabidopsis thaliana	52.86	0.00e+00	856.00
IUUC-Ago-007914	Ashbya gossypii	51.55	0.00e+00	804.00
IUUC-Acl-008237	Aspergillus clavatus	73.21	0.00e+00	1264.00
IUUC-Afl-008535	Aspergillus flavus	75.64	0.00e+00	1265.00
IUUC-Afu-008845	Aspergillus fumigatus	73.20	0.00e+00	1225.00
IUUC-Ani-009135	Aspergillus nidulans	71.74	0.00e+00	1196.00
IUUC-Ang-009654	Aspergillus niger	79.55	0.00e+00	1060.00
IUUC-Aor-009939	Aspergillus oryzae	72.80	0.00e+00	1275.00
IUUC-Ate-010355	Aspergillus terreus	76.46	0.00e+00	1221.00
IUUC-Ame-010922	Astyanax mexicanus	48.92	0.00e+00	795.00
IUUC-Bgr-012249	Blumeria graminis	70.48	0.00e+00	1208.00
IUUC-Bta-013579	Bos taurus	56.48	0.00e+00	892.00
IUUC-Bci-013866	Botrytis cinerea	72.89	0.00e+00	1171.00
IUUC-Bdi-015046	Brachypodium distachyon	51.28	0.00e+00	853.00
IUUC-Bol-015466	Brassica oleracea	51.46	0.00e+00	828.00
IUUC-Bra-016617	Brassica rapa	51.20	0.00e+00	824.00
IUUC-Cel-018387	Caenorhabditis elegans	49.36	0.00e+00	849.00
IUUC-Cja-019145	Callithrix jacchus	55.04	0.00e+00	936.00
IUUC-Cfa-020564	Canis familiaris	54.92	0.00e+00	935.00
IUUC-Cpo-022201	Cavia porcellus	54.92	0.00e+00	937.00
IUUC-Cre-022938	Chlamydomonas reinhardtii	51.34	0.00e+00	821.00
IUUC-Csa-023383	Chlorocebus sabaeus	60.37	0.00e+00	712.00
IUUC-Cho-024454	Choloepus hoffmanni	52.70	0.00e+00	800.00
IUUC-Cin-025681	Ciona intestinalis	52.84	0.00e+00	863.00
IUUC-Csv-026012	Ciona savignyi	54.36	0.00e+00	853.00
IUUC-Cgl-026649	Colletotrichum gloeosporioides	70.25	0.00e+00	1082.00
IUUC-Cne-026986	Cryptococcus neoformans	58.00	0.00e+00	948.00
IUUC-Cme-027219	Cyanidioschyzon merolae	46.19	0.00e+00	743.00
IUUC-Dre-027846	Danio rerio	55.11	0.00e+00	931.00
IUUC-Dor-030462	Dipodomys ordii	54.19	0.00e+00	751.00
IUUC-Dse-031268	Dothistroma septosporum	76.60	0.00e+00	1253.00
IUUC-Dme-031791	Drosophila melanogaster	51.85	0.00e+00	861.00
IUUC-Ete-033166	Echinops telfairi	53.42	7.00e-171	592.00
IUUC-Eca-034180	Equus caballus	53.19	0.00e+00	889.00
IUUC-Eeu-035086	Erinaceus europaeus	43.49	3.00e-105	374.00
IUUC-Fca-036265	Felis catus	54.92	0.00e+00	935.00
IUUC-Fal-037202	Ficedula albicollis	54.98	0.00e+00	931.00
IUUC-Fox-037711	Fusarium oxysporum	74.12	0.00e+00	1129.00
IUUC-Fso-038268	Fusarium solani	74.37	0.00e+00	1125.00
IUUC-Gmo-039046	Gadus morhua	54.33	0.00e+00	920.00
IUUC-Ggr-039863	Gaeumannomyces graminis	73.35	0.00e+00	1163.00
IUUC-Gga-041112	Gallus gallus	54.66	0.00e+00	932.00
IUUC-Gac-041733	Gasterosteus aculeatus	54.86	0.00e+00	902.00
IUUC-Gma-044333	Glycine max	52.98	0.00e+00	866.00
IUUC-Ggo-044984	Gorilla gorilla	55.04	0.00e+00	935.00
IUUC-Hsa-046698	Homo sapiens	54.92	0.00e+00	934.00
IUUC-Hvu-047669	Hordeum vulgare	60.44	2.00e-124	436.00
IUUC-Itr-048212	Ictidomys tridecemlineatus	54.92	0.00e+00	933.00
IUUC-Kpa-049265	Komagataella pastoris	55.58	0.00e+00	933.00
IUUC-Lch-050473	Latimeria chalumnae	54.72	0.00e+00	922.00
IUUC-Lpe-051579	Leersia perrieri	52.54	0.00e+00	848.00
IUUC-Loc-052675	Lepisosteus oculatus	54.28	0.00e+00	927.00
IUUC-Lma-053218	Leptosphaeria maculans	89.58	0.00e+00	1472.00
IUUC-Laf-053757	Loxodonta africana	54.65	0.00e+00	927.00
IUUC-Mcc-054859	Macaca mulatta	55.04	0.00e+00	935.00
IUUC-Meu-056174	Macropus eugenii	45.69	6.00e-92	330.00
IUUC-Mor-057264	Magnaporthe oryzae	72.25	0.00e+00	1136.00
IUUC-Mpo-057538	Magnaporthe poae	73.47	0.00e+00	1188.00
IUUC-Mtr-058310	Medicago truncatula	52.28	0.00e+00	858.00
IUUC-Mla-058937	Melampsora laricipopulina	55.23	0.00e+00	905.00
IUUC-Mga-059875	Meleagris gallopavo	54.39	0.00e+00	926.00
IUUC-Mvi-060240	Microbotryum violaceum	57.77	0.00e+00	969.00
IUUC-Mmr-061261	Microcebus murinus	54.92	0.00e+00	935.00
IUUC-Mdo-062076	Monodelphis domestica	54.79	0.00e+00	937.00
IUUC-Mmu-063324	Mus musculus	54.79	0.00e+00	933.00
IUUC-Mac-064636	Musa acuminata	50.60	0.00e+00	845.00
IUUC-Mpu-065961	Mustela putorius furo	54.92	0.00e+00	934.00
IUUC-Mlu-067059	Myotis lucifugus	54.28	0.00e+00	909.00
IUUC-Nfi-068277	Neosartorya fischeri	76.34	0.00e+00	1225.00
IUUC-Ncr-068659	Neurospora crassa	70.44	0.00e+00	1191.00
IUUC-Nle-069034	Nomascus leucogenys	55.04	0.00e+00	935.00
IUUC-Opr-070334	Ochotona princeps	56.96	0.00e+00	876.00
IUUC-Ont-071563	Oreochromis niloticus	54.73	0.00e+00	923.00
IUUC-Oan-073416	Ornithorhynchus anatinus	55.24	0.00e+00	934.00
IUUC-Ocu-074522	Oryctolagus cuniculus	54.79	0.00e+00	931.00
IUUC-Oba-075760	Oryza barthii	52.36	0.00e+00	862.00
IUUC-Obr-076163	Oryza brachyantha	50.67	0.00e+00	840.00
IUUC-Ogl-077450	Oryza glaberrima	52.23	0.00e+00	859.00
IUUC-Ogu-078994	Oryza glumaepatula	52.36	0.00e+00	862.00
IUUC-Oin-079211	Oryza indica	51.81	0.00e+00	862.00
IUUC-Olo-080731	Oryza longistaminata	52.36	0.00e+00	861.00
IUUC-Ome-081762	Oryza meridionalis	49.20	0.00e+00	802.00
IUUC-Oni-082324	Oryza nivara	52.36	0.00e+00	862.00
IUUC-Opu-083433	Oryza punctata	52.46	0.00e+00	847.00
IUUC-Oru-084829	Oryza rufipogon	52.36	0.00e+00	862.00
IUUC-Osa-086026	Oryza sativa	52.36	0.00e+00	862.00
IUUC-Ola-087245	Oryzias latipes	54.50	0.00e+00	928.00
IUUC-Olu-087655	Ostreococcus lucimarinus	50.18	0.00e+00	848.00
IUUC-Oga-088163	Otolemur garnettii	52.61	0.00e+00	884.00
IUUC-Oar-089842	Ovis aries	54.66	0.00e+00	932.00
IUUC-Ptr-090501	Pan troglodytes	55.04	0.00e+00	934.00
IUUC-Pan-092011	Papio anubis	55.04	0.00e+00	935.00
IUUC-Psi-093308	Pelodiscus sinensis	54.80	0.00e+00	931.00
IUUC-Pma-094695	Petromyzon marinus	54.31	0.00e+00	865.00
IUUC-Pno-094785	Phaeosphaeria nodorum	95.82	2.00e-167	580.00
IUUC-Ppa-095911	Physcomitrella patens	53.64	0.00e+00	870.00
IUUC-Pfo-096587	Poecilia formosa	55.12	0.00e+00	930.00
IUUC-Pab-097926	Pongo abelii	53.43	0.00e+00	860.00
IUUC-Pop-099634	Populus trichocarpa	52.41	0.00e+00	860.00
IUUC-Pca-100965	Procavia capensis	53.90	0.00e+00	900.00
IUUC-Ppe-101470	Prunus persica	52.66	0.00e+00	863.00
IUUC-Pva-102451	Pteropus vampyrus	53.24	0.00e+00	734.00
IUUC-Pgr-103590	Puccinia graminis	55.77	0.00e+00	932.00
IUUC-Ptt-103868	Puccinia triticina	55.39	0.00e+00	929.00
IUUC-Pte-104274	Pyrenophora teres	94.22	0.00e+00	1561.00
IUUC-Rno-105979	Rattus norvegicus	47.50	0.00e+00	698.00
IUUC-Sce-106269	Saccharomyces cerevisiae	49.76	0.00e+00	832.00
IUUC-Sha-106905	Sarcophilus harrisii	54.79	0.00e+00	937.00
IUUC-Sja-107838	Schizosaccharomyces japonicus	52.44	0.00e+00	835.00
IUUC-Spo-108299	Schizosaccharomyces pombe	52.77	0.00e+00	865.00
IUUC-Smo-108695	Selaginella moellendorffii	51.20	0.00e+00	852.00
IUUC-Sit-110239	Setaria italica	51.73	0.00e+00	863.00
IUUC-Sly-111775	Solanum lycopersicum	51.88	0.00e+00	852.00
IUUC-Stu-112906	Solanum tuberosum	52.74	0.00e+00	805.00
IUUC-Sar-113472	Sorex araneus	53.38	0.00e+00	721.00
IUUC-Sbi-114052	Sorghum bicolor	53.19	0.00e+00	868.00
IUUC-Sre-115040	Sporisorium reilianum	55.20	0.00e+00	902.00
IUUC-Ssc-115593	Sus scrofa	54.79	0.00e+00	933.00
IUUC-Tgu-117239	Taeniopygia guttata	54.98	0.00e+00	930.00
IUUC-Tru-118025	Takifugu rubripes	54.78	0.00e+00	922.00
IUUC-Tsy-118824	Tarsius syrichta	52.27	0.00e+00	670.00
IUUC-Tni-120142	Tetraodon nigroviridis	54.60	0.00e+00	919.00
IUUC-Tca-121613	Theobroma cacao	52.42	0.00e+00	860.00
IUUC-Tre-122072	Trichoderma reesei	70.54	0.00e+00	1186.00
IUUC-Tvi-122546	Trichoderma virens	71.10	0.00e+00	1199.00
IUUC-Tae-125395	Triticum aestivum	52.23	0.00e+00	860.00
IUUC-Tur-126283	Triticum urartu	47.46	0.00e+00	743.00
IUUC-Tme-127041	Tuber melanosporum	69.59	0.00e+00	1199.00
IUUC-Tbe-127770	Tupaia belangeri	55.45	0.00e+00	764.00
IUUC-Ttr-129294	Tursiops truncatus	54.79	0.00e+00	931.00
IUUC-Uma-129351	Ustilago maydis	54.24	0.00e+00	911.00
IUUC-Vda-129716	Verticillium dahliae	75.54	0.00e+00	1229.00
IUUC-Vpa-130037	Vicugna pacos	44.73	7.00e-115	406.00
IUUC-Vvi-131689	Vitis vinifera	53.05	0.00e+00	859.00
IUUC-Xtr-132633	Xenopus tropicalis	54.72	0.00e+00	927.00
IUUC-Xma-133347	Xiphophorus maculatus	54.99	0.00e+00	929.00
IUUC-Yli-134455	Yarrowia lipolytica	55.65	0.00e+00	894.00
IUUC-Zma-135867	Zea mays	51.22	0.00e+00	862.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence