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Tag Content
UUCD2 ID IUUC-Aly-005857
UUCD1 version UUC-ArL-00018
Ensembl Protein ID scaffold_603862.1
UniProt Accession D7M2J3; D7M2J3_ARALL
Genbank Protein ID EFH49014.1
Protein Name UV-damaged DNA-binding protein 1A
Genbank Nucleotide ID GL348718
Gene Name DDB1A; ARALYDRAFT_911805
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
scaffold_603862.1 scaffold_603862.1 scaffold_603862.1
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DDB1 0 1712.7 734 1088
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DDB1
   S: 782  elseleenevnfllvlDkntfelllaqdlrewEtavsllSqklkdDseeyyvvktalvlpeenelkkgrilvfsvedslklkLltvaekk 871
           + s++ee+e++f+++lD++tfe++++++l+++E+++s+lS++++dD+++yy+v+ta+vlpeene++kgrilvf+ved+   +L+ +aek+
   Q: 734  NQSNAEESEMHFVRLLDDQTFEFMSTYPLDSFEYGCSILSCSFTDDKNVYYCVGTAYVLPEENEPTKGRILVFIVEDG---RLQLIAEKE 820
           56899*************************************************************************...********* PP
   S: 872  vkgavidlvklNgkllaainseirlyewkvmgtdekelrkeCernntilaLtlktrkdfivVgDlmrsvtLllykdlegsfeEsardynl 961
           +kgav++l+++Ngkllaain++i+ly+w++++++++el++eC+++++ilaL+++tr+dfivVgDlm+s++Lllyk++eg++eE+ardyn+
   Q: 821  TKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLLYKHEEGAIEERARDYNA 910
           ****************************************************************************************** PP
   S: 962  ewmsaveilnddiflgaencgNlfvvkkdikagltdeerslleevgefrlgefvevfrfgtlvlqdvgerevnrssevifgtengeigvi 1051
           +wmsaveil+ddi+lgaen++Nl +vkk+ ++g+tdeer +le+vge++lgefv++fr+g+lv++ + ++e++++++vifgt+ng+igvi
   Q: 911  NWMSAVEILDDDIYLGAENNFNLVTVKKN-SEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLP-DSEIGQIPTVIFGTVNGVIGVI 998
           *****************************.***********************************98.********************** PP
   S: 1052 lrlrrellkflrnlestlkkvikrvakieHssyRsFetekrterasgfvdgdLiesilDlsrdkavdilkvlyekrwnskkevsveeivK 1141
           ++l++e+++fl++l+s+l+kvik+v++++H+++RsF++ekrt++a++f+dgdLies+lDlsr+k++di+k++         +v+vee++K
   Q: 999  ASLPQEQYTFLEKLQSSLRKVIKGVGGLSHEQWRSFNNEKRTAEARNFLDGDLIESFLDLSRNKMEDISKSM---------NVQVEELCK 1079
           ************************************************************************.........9******** PP
   S: 1142 lveelkrlh 1150
           +veel+rlh
   Q: 1080 RVEELTRLH 1088
           *******98 PP
   
Organism Arabidopsis lyrata
Protein Sequence
(Fasta)
MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG 60
RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDAESSELI TRAMGDVSDR IGRPTDNGQI 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Aly-005857|E3,DDB1|Arabidopsis lyrata
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TTCCTCAGGG ACAAAGAAGA GGAAGATGAG CTCATGGAAC TACGTTGTTA CGGCGCACAA 60
ACCGACCAGT GTCACTCACT CGTGCGTTGG CAACTTCACA AGTCCTCAAG AGCTCAATCT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Aly-005857|E3,DDB1|Arabidopsis lyrata
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0238--DNA-binding
KW-1185--Reference proteome
Interpro

IPR004871--Cleavage/polyA-sp_fac_asu_C
IPR031297--DDB1
IPR015943--WD40/YVTN_repeat-like_dom
IPR017986--WD40_repeat_dom
Pfam

PF03178--CPSF_A
Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005829--C:cytosol
GO:0005634--C:nucleus
GO:0003677--F:DNA binding
GO:0006281--P:DNA repair
KEGG aly:ARALYDRAFT_911805
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000120 Aegilops tauschii 78.93 0.00e+00 1842.00
IUUC-Aml-002096 Ailuropoda melanoleuca 52.71 0.00e+00 1186.00
IUUC-Atr-002742 Amborella trichopoda 86.04 0.00e+00 1924.00
IUUC-Apl-003624 Anas platyrhynchos 52.07 0.00e+00 1144.00
IUUC-Aca-005085 Anolis carolinensis 52.71 0.00e+00 1179.00
IUUC-Ath-006658 Arabidopsis thaliana 99.17 0.00e+00 2209.00
IUUC-Acl-008149 Aspergillus clavatus 30.72 3.00e-124 439.00
IUUC-Afl-008549 Aspergillus flavus 30.82 2.00e-124 439.00
IUUC-Afu-009076 Aspergillus fumigatus 31.20 5.00e-135 474.00
IUUC-Ani-009302 Aspergillus nidulans 28.41 3.00e-108 385.00
IUUC-Ang-009636 Aspergillus niger 29.67 3.00e-110 392.00
IUUC-Aor-010073 Aspergillus oryzae 31.32 1.00e-132 467.00
IUUC-Ate-010422 Aspergillus terreus 30.62 6.00e-129 454.00
IUUC-Ame-011643 Astyanax mexicanus 46.51 0.00e+00 987.00
IUUC-Bta-012494 Bos taurus 52.71 0.00e+00 1185.00
IUUC-Bci-013957 Botrytis cinerea 30.14 3.00e-115 409.00
IUUC-Bdi-014186 Brachypodium distachyon 82.39 0.00e+00 1853.00
IUUC-Bol-015922 Brassica oleracea 97.43 0.00e+00 2179.00
IUUC-Bra-017300 Brassica rapa 97.24 0.00e+00 2170.00
IUUC-Cel-018239 Caenorhabditis elegans 33.75 4.00e-178 618.00
IUUC-Cja-019165 Callithrix jacchus 52.62 0.00e+00 1184.00
IUUC-Cfa-020406 Canis familiaris 52.71 0.00e+00 1186.00
IUUC-Cpo-022154 Cavia porcellus 52.71 0.00e+00 1186.00
IUUC-Cre-022557 Chlamydomonas reinhardtii 49.56 0.00e+00 1004.00
IUUC-Csa-024061 Chlorocebus sabaeus 52.62 0.00e+00 1184.00
IUUC-Cho-024554 Choloepus hoffmanni 47.83 6.00e-135 474.00
IUUC-Cin-025466 Ciona intestinalis 48.87 0.00e+00 1065.00
IUUC-Csv-026370 Ciona savignyi 47.86 0.00e+00 956.00
IUUC-Cgl-026595 Colletotrichum gloeosporioides 28.71 3.00e-115 409.00
IUUC-Cme-027342 Cyanidioschyzon merolae 30.27 1.00e-135 477.00
IUUC-Dre-027448 Danio rerio 52.14 4.00e-163 567.00
IUUC-Dno-029794 Dasypus novemcinctus 53.19 0.00e+00 1130.00
IUUC-Dor-030789 Dipodomys ordii 46.75 3.00e-120 426.00
IUUC-Dse-031491 Dothistroma septosporum 30.44 6.00e-132 464.00
IUUC-Dme-031940 Drosophila melanogaster 46.74 0.00e+00 986.00
IUUC-Ete-032913 Echinops telfairi 55.47 2.00e-82 300.00
IUUC-Eca-033777 Equus caballus 52.44 0.00e+00 1177.00
IUUC-Eeu-034900 Erinaceus europaeus 50.50 4.00e-165 575.00
IUUC-Fca-035869 Felis catus 52.71 0.00e+00 1186.00
IUUC-Fal-036777 Ficedula albicollis 52.48 0.00e+00 1172.00
IUUC-Fox-037954 Fusarium oxysporum 28.24 2.00e-120 426.00
IUUC-Gmo-038815 Gadus morhua 47.60 5.00e-154 538.00
IUUC-Ggr-039907 Gaeumannomyces graminis 26.91 2.00e-112 399.00
IUUC-Gga-040995 Gallus gallus 52.53 0.00e+00 1179.00
IUUC-Gac-042390 Gasterosteus aculeatus 52.32 0.00e+00 1111.00
IUUC-Gma-042904 Glycine max 90.54 0.00e+00 1987.00
IUUC-Ggo-044891 Gorilla gorilla 52.48 0.00e+00 1180.00
IUUC-Hsa-046709 Homo sapiens 52.62 0.00e+00 1184.00
IUUC-Hvu-047504 Hordeum vulgare 82.39 0.00e+00 1868.00
IUUC-Itr-048678 Ictidomys tridecemlineatus 52.79 0.00e+00 1186.00
IUUC-Lch-050565 Latimeria chalumnae 52.70 0.00e+00 1182.00
IUUC-Lpe-051260 Leersia perrieri 83.67 0.00e+00 1869.00
IUUC-Loc-052091 Lepisosteus oculatus 47.74 0.00e+00 792.00
IUUC-Lma-053246 Leptosphaeria maculans 29.26 8.00e-124 437.00
IUUC-Laf-053502 Loxodonta africana 52.79 0.00e+00 1185.00
IUUC-Mcc-054802 Macaca mulatta 53.13 0.00e+00 1174.00
IUUC-Meu-056808 Macropus eugenii 54.52 0.00e+00 783.00
IUUC-Mor-057253 Magnaporthe oryzae 28.30 5.00e-107 382.00
IUUC-Mpo-057562 Magnaporthe poae 26.69 1.00e-107 384.00
IUUC-Mtr-057743 Medicago truncatula 89.72 0.00e+00 2001.00
IUUC-Mla-059154 Melampsora laricipopulina 25.96 8.00e-90 325.00
IUUC-Mga-059824 Meleagris gallopavo 52.17 0.00e+00 1093.00
IUUC-Mvi-060279 Microbotryum violaceum 28.99 8.00e-120 424.00
IUUC-Mmr-061215 Microcebus murinus 52.36 0.00e+00 1174.00
IUUC-Mdo-062028 Monodelphis domestica 50.41 0.00e+00 936.00
IUUC-Mmu-064327 Mus musculus 52.71 0.00e+00 1185.00
IUUC-Mac-065445 Musa acuminata 86.23 0.00e+00 1924.00
IUUC-Mpu-065814 Mustela putorius furo 50.87 0.00e+00 1123.00
IUUC-Mlu-067136 Myotis lucifugus 52.71 0.00e+00 1179.00
IUUC-Nfi-068355 Neosartorya fischeri 31.35 1.00e-129 457.00
IUUC-Ncr-068620 Neurospora crassa 29.65 6.00e-123 434.00
IUUC-Nle-069566 Nomascus leucogenys 53.04 0.00e+00 1166.00
IUUC-Opr-070915 Ochotona princeps 51.48 0.00e+00 877.00
IUUC-Ont-071753 Oreochromis niloticus 52.62 0.00e+00 1177.00
IUUC-Oan-073187 Ornithorhynchus anatinus 52.89 0.00e+00 1072.00
IUUC-Ocu-074619 Oryctolagus cuniculus 52.71 0.00e+00 1187.00
IUUC-Oba-075091 Oryza barthii 80.42 0.00e+00 1261.00
IUUC-Obr-076425 Oryza brachyantha 83.79 0.00e+00 1873.00
IUUC-Ogu-078794 Oryza glumaepatula 83.76 0.00e+00 1876.00
IUUC-Oin-079725 Oryza indica 82.74 0.00e+00 1844.00
IUUC-Olo-080842 Oryza longistaminata 80.39 0.00e+00 1691.00
IUUC-Ome-081818 Oryza meridionalis 83.67 0.00e+00 1873.00
IUUC-Oni-082879 Oryza nivara 83.12 0.00e+00 1854.00
IUUC-Opu-083361 Oryza punctata 82.71 0.00e+00 1867.00
IUUC-Oru-084781 Oryza rufipogon 83.76 0.00e+00 1877.00
IUUC-Osa-086293 Oryza sativa 83.76 0.00e+00 1877.00
IUUC-Ola-086881 Oryzias latipes 52.35 0.00e+00 1167.00
IUUC-Olu-087674 Ostreococcus lucimarinus 55.83 0.00e+00 1170.00
IUUC-Oga-089056 Otolemur garnettii 52.62 0.00e+00 1184.00
IUUC-Oar-089457 Ovis aries 53.22 0.00e+00 1175.00
IUUC-Ptr-091179 Pan troglodytes 52.53 0.00e+00 1160.00
IUUC-Pan-092019 Papio anubis 52.39 0.00e+00 1175.00
IUUC-Psi-093407 Pelodiscus sinensis 52.52 0.00e+00 1155.00
IUUC-Pma-094272 Petromyzon marinus 52.87 0.00e+00 1073.00
IUUC-Pno-094864 Phaeosphaeria nodorum 30.13 6.00e-134 471.00
IUUC-Ppa-095885 Physcomitrella patens 80.46 0.00e+00 1762.00
IUUC-Pfo-096083 Poecilia formosa 52.75 0.00e+00 1178.00
IUUC-Pab-098652 Pongo abelii 51.04 0.00e+00 1084.00
IUUC-Pop-099593 Populus trichocarpa 91.36 0.00e+00 2003.00
IUUC-Pca-100189 Procavia capensis 51.11 0.00e+00 663.00
IUUC-Ppe-101987 Prunus persica 89.62 0.00e+00 1938.00
IUUC-Pva-102605 Pteropus vampyrus 52.53 0.00e+00 1180.00
IUUC-Pte-104233 Pyrenophora teres 30.67 3.00e-135 475.00
IUUC-Pyt-104454 Pyrenophora triticirepentis 30.66 3.00e-132 465.00
IUUC-Rno-106004 Rattus norvegicus 52.62 0.00e+00 1184.00
IUUC-Sha-106726 Sarcophilus harrisii 51.53 0.00e+00 1063.00
IUUC-Sja-107864 Schizosaccharomyces japonicus 25.73 7.00e-92 331.00
IUUC-Ssl-108441 Sclerotinia sclerotiorum 29.97 5.00e-109 388.00
IUUC-Smo-108808 Selaginella moellendorffii 79.82 0.00e+00 1834.00
IUUC-Sit-109735 Setaria italica 83.52 0.00e+00 1873.00
IUUC-Sly-111520 Solanum lycopersicum 88.68 0.00e+00 1986.00
IUUC-Sar-113606 Sorex araneus 51.65 4.00e-64 239.00
IUUC-Sbi-114539 Sorghum bicolor 80.78 0.00e+00 1840.00
IUUC-Ssc-116038 Sus scrofa 52.62 0.00e+00 1184.00
IUUC-Tgu-117512 Taeniopygia guttata 52.44 0.00e+00 1172.00
IUUC-Tru-117593 Takifugu rubripes 51.87 0.00e+00 1159.00
IUUC-Tsy-119513 Tarsius syrichta 50.96 3.00e-175 608.00
IUUC-Tni-120551 Tetraodon nigroviridis 48.57 0.00e+00 912.00
IUUC-Tca-121505 Theobroma cacao 92.00 0.00e+00 2010.00
IUUC-Tre-122136 Trichoderma reesei 28.10 7.00e-117 414.00
IUUC-Tvi-122512 Trichoderma virens 28.23 2.00e-122 433.00
IUUC-Tae-124186 Triticum aestivum 82.39 0.00e+00 1868.00
IUUC-Tur-126451 Triticum urartu 81.41 0.00e+00 1662.00
IUUC-Tme-127057 Tuber melanosporum 31.13 8.00e-129 454.00
IUUC-Ttr-128891 Tursiops truncatus 50.52 0.00e+00 739.00
IUUC-Vda-129870 Verticillium dahliae 26.56 6.00e-107 381.00
IUUC-Vpa-130117 Vicugna pacos 49.84 0.00e+00 886.00
IUUC-Vvi-131033 Vitis vinifera 90.73 0.00e+00 2027.00
IUUC-Xtr-131987 Xenopus tropicalis 52.35 0.00e+00 1161.00
IUUC-Xma-134117 Xiphophorus maculatus 51.91 0.00e+00 1149.00
IUUC-Zma-134758 Zea mays 83.20 0.00e+00 1871.00
Created Date 25-Jun-2017

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