iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Itr-048697

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Katanin p80 WD40 repeat-containing subunit B1; p80 katanin

Genbank Nucleotide ID

AGTP01009412

Gene Name

KATNB1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSTOG00000025980.1	ENSSTOT00000020036.1	ENSSTOP00000023310.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.50e-45	151.2	145	180
UBD/Beta-Prp	3.70e-60	203.6	15	258

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgv 34
           gH+  v+cl+f +d + l+s++dD+t+k+WDl+ g+
   Q: 145  GHSQAVRCLRFsPDgKWLASAADDHTVKLWDLTAGK 180
           8***********999*****************9997 PP

UBD/Beta-Prp

   S: 4    tlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkg 92
           ++ +h ++v + v  + +++llatg++d ++ +w++ +++++ sl gh+++v +v+++  ++++v gs+ + i+vwdl++ k+++tl g
   Q: 15   EIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMG 103
           67788888999888899************************************************************************ PP
   S: 93   hedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtd 181
           h+++++sl+f+p+g++++sGs+d  i++wd++ + c+    +gh+++v+c++++pdg+ l+s+++D tv+lWdl  gk++ ++ g ht+
   Q: 104  HKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVF-RYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPG-HTG 190
           *************************************9.9********************************************9.*** PP
   S: 182  svyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWd 250
           +v+ ++f++n   l+sgs d+t+++wdl++ ++v   +g   +v+sv f p++  l+sg +D s+r++ 
   Q: 191  PVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQD-SLRVYG 258
           ***********************************************************766.555543 PP

Organism

Ictidomys tridecemlineatus

Functional Description
(View)

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth.

Protein Sequence
(Fasta)

MATPVVTKTA WKLQEIVAHA SNVSSLVLGK ASGRLLATGG DDCRVNLWSI NKPNCIMSLT 60
GHTSPVESVR LNTPEELIVA GSQSGSIRVW DLEAAKILRT LMGHKANICS LDFHPYGEFV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTGGATGAGT TAAAGACACC AGGTCGTCCA GGGCCAGGAG AGGAGACATT CTCTCTGCCT 60
GGATGTGTGT CAACTCTCTG CCACCTTGAT TGGTGGATCT GGGGGGGATC CACCCCCACC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0131--Cell cycle
KW-0132--Cell division
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-0498--Mitosis
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030424--C:axon
GO:0005813--C:centrosome
GO:0005829--C:cytosol
GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0005634--C:nucleus
GO:0005886--C:plasma membrane
GO:0000922--C:spindle pole
GO:0008568--F:microtubule-severing ATPase activity
GO:0051301--P:cell division
GO:0051013--P:microtubule severing
GO:0007079--P:mitotic chromosome movement towards spindle pole
GO:0007026--P:negative regulation of microtubule depolymerization
GO:0031117--P:positive regulation of microtubule depolymerization

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000954	Aegilops tauschii	48.17	2.00e-86	314.00
IUUC-Aml-002187	Ailuropoda melanoleuca	87.07	0.00e+00	1094.00
IUUC-Atr-002899	Amborella trichopoda	54.45	7.00e-103	368.00
IUUC-Apl-003305	Anas platyrhynchos	76.82	0.00e+00	1003.00
IUUC-Aca-004635	Anolis carolinensis	80.03	0.00e+00	954.00
IUUC-Aly-005711	Arabidopsis lyrata	51.50	1.00e-101	363.00
IUUC-Ath-007606	Arabidopsis thaliana	51.50	1.00e-101	364.00
IUUC-Ame-010870	Astyanax mexicanus	54.80	3.00e-93	335.00
IUUC-Bta-012527	Bos taurus	93.21	0.00e+00	1165.00
IUUC-Bdi-014652	Brachypodium distachyon	53.51	5.00e-104	372.00
IUUC-Bol-015242	Brassica oleracea	50.50	7.00e-100	358.00
IUUC-Bra-017390	Brassica rapa	50.83	3.00e-100	359.00
IUUC-Cja-019706	Callithrix jacchus	93.76	0.00e+00	1088.00
IUUC-Cfa-020139	Canis familiaris	79.14	0.00e+00	755.00
IUUC-Cpo-021710	Cavia porcellus	94.50	0.00e+00	1160.00
IUUC-Cre-022746	Chlamydomonas reinhardtii	41.47	7.00e-69	254.00
IUUC-Csa-023546	Chlorocebus sabaeus	94.96	0.00e+00	1046.00
IUUC-Cin-025156	Ciona intestinalis	42.79	5.00e-157	547.00
IUUC-Csv-025962	Ciona savignyi	49.66	6.00e-90	323.00
IUUC-Dre-028215	Danio rerio	61.42	0.00e+00	838.00
IUUC-Dno-029314	Dasypus novemcinctus	93.13	0.00e+00	1106.00
IUUC-Dor-030482	Dipodomys ordii	94.50	0.00e+00	1197.00
IUUC-Dme-032188	Drosophila melanogaster	39.81	9.00e-60	224.00
IUUC-Eca-034143	Equus caballus	94.03	0.00e+00	1172.00
IUUC-Fca-035924	Felis catus	95.27	0.00e+00	1154.00
IUUC-Fal-037387	Ficedula albicollis	78.76	0.00e+00	988.00
IUUC-Gmo-038692	Gadus morhua	59.24	0.00e+00	743.00
IUUC-Gga-040597	Gallus gallus	78.88	0.00e+00	1040.00
IUUC-Gac-042004	Gasterosteus aculeatus	61.39	0.00e+00	820.00
IUUC-Gma-044134	Glycine max	32.28	9.00e-107	380.00
IUUC-Ggo-044761	Gorilla gorilla	95.27	0.00e+00	1088.00
IUUC-Hsa-045698	Homo sapiens	95.11	0.00e+00	1113.00
IUUC-Hvu-047649	Hordeum vulgare	53.25	3.00e-104	372.00
IUUC-Lch-049674	Latimeria chalumnae	67.69	0.00e+00	914.00
IUUC-Lpe-051554	Leersia perrieri	54.52	2.00e-106	380.00
IUUC-Loc-052623	Lepisosteus oculatus	66.96	0.00e+00	901.00
IUUC-Laf-054587	Loxodonta africana	94.53	0.00e+00	1169.00
IUUC-Mcc-055851	Macaca mulatta	95.27	0.00e+00	1088.00
IUUC-Meu-056704	Macropus eugenii	89.36	0.00e+00	1170.00
IUUC-Mtr-058053	Medicago truncatula	52.49	9.00e-105	374.00
IUUC-Mga-059608	Meleagris gallopavo	78.05	0.00e+00	1028.00
IUUC-Mmr-061154	Microcebus murinus	92.74	0.00e+00	1109.00
IUUC-Mdo-062365	Monodelphis domestica	86.21	0.00e+00	1111.00
IUUC-Mmu-063754	Mus musculus	94.38	0.00e+00	1146.00
IUUC-Mac-064667	Musa acuminata	52.38	5.00e-101	361.00
IUUC-Mpu-066245	Mustela putorius furo	93.74	0.00e+00	1111.00
IUUC-Mlu-067692	Myotis lucifugus	93.98	0.00e+00	1128.00
IUUC-Nle-070051	Nomascus leucogenys	92.68	0.00e+00	1065.00
IUUC-Opr-070855	Ochotona princeps	94.50	0.00e+00	1155.00
IUUC-Ont-071883	Oreochromis niloticus	58.62	0.00e+00	813.00
IUUC-Oan-073293	Ornithorhynchus anatinus	88.94	0.00e+00	1021.00
IUUC-Ocu-074644	Oryctolagus cuniculus	95.27	0.00e+00	1167.00
IUUC-Oba-075448	Oryza barthii	54.85	9.00e-107	380.00
IUUC-Obr-076385	Oryza brachyantha	53.85	1.00e-105	377.00
IUUC-Ogl-077427	Oryza glaberrima	54.85	4.00e-107	382.00
IUUC-Ogu-079022	Oryza glumaepatula	48.88	3.00e-98	352.00
IUUC-Oin-079811	Oryza indica	52.41	7.00e-104	371.00
IUUC-Olo-080245	Oryza longistaminata	52.41	7.00e-104	371.00
IUUC-Ome-081239	Oryza meridionalis	54.27	2.00e-103	369.00
IUUC-Oni-082640	Oryza nivara	54.85	9.00e-107	380.00
IUUC-Opu-083748	Oryza punctata	51.22	1.00e-106	380.00
IUUC-Oru-084609	Oryza rufipogon	54.85	9.00e-107	380.00
IUUC-Osa-086267	Oryza sativa	48.88	3.00e-98	352.00
IUUC-Ola-087483	Oryzias latipes	55.25	0.00e+00	632.00
IUUC-Oga-087964	Otolemur garnettii	94.35	0.00e+00	1172.00
IUUC-Oar-089483	Ovis aries	92.01	0.00e+00	1129.00
IUUC-Ptr-091387	Pan troglodytes	95.27	0.00e+00	1115.00
IUUC-Pan-092623	Papio anubis	95.27	0.00e+00	1088.00
IUUC-Psi-093830	Pelodiscus sinensis	81.09	0.00e+00	1041.00
IUUC-Pma-094135	Petromyzon marinus	41.95	4.00e-36	144.00
IUUC-Ppa-095379	Physcomitrella patens	54.79	5.00e-98	352.00
IUUC-Pfo-096755	Poecilia formosa	57.79	0.00e+00	793.00
IUUC-Pab-097564	Pongo abelii	93.83	0.00e+00	959.00
IUUC-Pop-099149	Populus trichocarpa	52.49	2.00e-104	372.00
IUUC-Pca-100357	Procavia capensis	99.52	2.00e-126	446.00
IUUC-Ppe-101237	Prunus persica	52.49	5.00e-104	372.00
IUUC-Pva-102397	Pteropus vampyrus	90.08	0.00e+00	1065.00
IUUC-Rno-105349	Rattus norvegicus	94.81	0.00e+00	1190.00
IUUC-Smo-109379	Selaginella moellendorffii	54.27	9.00e-102	364.00
IUUC-Sit-110360	Setaria italica	54.85	1.00e-106	380.00
IUUC-Sly-111307	Solanum lycopersicum	53.18	1.00e-99	357.00
IUUC-Stu-112462	Solanum tuberosum	52.40	5.00e-96	344.00
IUUC-Sar-112953	Sorex araneus	82.02	3.00e-109	388.00
IUUC-Sbi-114389	Sorghum bicolor	46.98	2.00e-94	340.00
IUUC-Ssc-115949	Sus scrofa	91.00	0.00e+00	861.00
IUUC-Tgu-117461	Taeniopygia guttata	77.48	0.00e+00	1015.00
IUUC-Tru-117865	Takifugu rubripes	59.20	0.00e+00	786.00
IUUC-Tsy-119036	Tarsius syrichta	80.41	3.00e-82	298.00
IUUC-Tni-120903	Tetraodon nigroviridis	60.06	0.00e+00	772.00
IUUC-Tca-121185	Theobroma cacao	51.50	3.00e-101	363.00
IUUC-Tae-125263	Triticum aestivum	53.57	1.00e-104	374.00
IUUC-Tur-126181	Triticum urartu	47.96	1.00e-94	340.00
IUUC-Tbe-127518	Tupaia belangeri	79.42	0.00e+00	632.00
IUUC-Ttr-128172	Tursiops truncatus	94.05	0.00e+00	1118.00
IUUC-Vvi-131489	Vitis vinifera	53.16	1.00e-104	374.00
IUUC-Xtr-132915	Xenopus tropicalis	72.58	0.00e+00	951.00
IUUC-Xma-134133	Xiphophorus maculatus	57.64	0.00e+00	783.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence