iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
RAID2
Protein-protein Interaction
IID
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.90e-26	90.8	293	322

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sdtllvsGsdDgtikvWDl 30
           H+++v+c+af  d+ll++Gs D  i vW+l
   Q: 293  HSAPVHCVAFaADGLLAAGSKDQRISVWSL 322
           9**********88***************96 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MAAPFPPPPS PRFVLRGTQS AVNTLHFCPA PGAAENPLLF SGSQNGLVHI WSLQTRRIVA 60
TLNGHGGQGV TWLKTLPQGQ QLLSQGRDPR LCLWDLAEGR NTVMDSVQLD SVGFCKSSIL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGCGGGCCGA GGTGCGCGCG CAGACCCGCG GGAAGGCTAA CTTGGGGCGT GCGGAGCTCC 60
GGAGCGGGCA CGTCGCGGGT GGCCGCGTAC GCCGAGGGGG CGTGGCTGAC GAGGCACCCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005737--C:cytoplasm
GO:0035176--P:social behavior

KEGG

rno:680266

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000703	Aegilops tauschii	25.00	4.00e-25	109.00
IUUC-Aml-001556	Ailuropoda melanoleuca	78.40	4.00e-141	493.00
IUUC-Atr-002691	Amborella trichopoda	42.95	5.00e-30	125.00
IUUC-Apl-003227	Anas platyrhynchos	58.93	1.00e-111	396.00
IUUC-Aly-006168	Arabidopsis lyrata	28.99	6.00e-35	141.00
IUUC-Ath-007145	Arabidopsis thaliana	28.99	2.00e-33	136.00
IUUC-Acl-008132	Aspergillus clavatus	25.47	5.00e-19	89.00
IUUC-Afl-008655	Aspergillus flavus	23.64	1.00e-21	97.80
IUUC-Afu-008778	Aspergillus fumigatus	23.22	2.00e-16	80.50
IUUC-Ang-009760	Aspergillus niger	23.80	3.00e-16	79.70
IUUC-Bgr-012119	Blumeria graminis	24.70	3.00e-21	95.90
IUUC-Bta-012556	Bos taurus	70.29	2.00e-128	451.00
IUUC-Bdi-014151	Brachypodium distachyon	27.49	1.00e-22	100.00
IUUC-Bol-016319	Brassica oleracea	28.65	4.00e-35	142.00
IUUC-Bra-016675	Brassica rapa	28.46	4.00e-35	142.00
IUUC-Cja-019523	Callithrix jacchus	79.94	1.00e-147	515.00
IUUC-Cfa-021217	Canis familiaris	78.53	4.00e-141	494.00
IUUC-Cpo-021506	Cavia porcellus	81.41	1.00e-142	498.00
IUUC-Csa-023674	Chlorocebus sabaeus	77.96	6.00e-144	503.00
IUUC-Cgl-026723	Colletotrichum gloeosporioides	26.14	5.00e-21	95.50
IUUC-Cme-027295	Cyanidioschyzon merolae	29.45	1.00e-09	57.80
IUUC-Dre-027592	Danio rerio	49.21	2.00e-82	299.00
IUUC-Dno-029880	Dasypus novemcinctus	64.97	5.00e-109	387.00
IUUC-Dor-030266	Dipodomys ordii	87.57	2.00e-94	338.00
IUUC-Dse-031212	Dothistroma septosporum	25.19	1.00e-26	113.00
IUUC-Dme-032209	Drosophila melanogaster	28.53	2.00e-26	113.00
IUUC-Eca-033371	Equus caballus	78.59	3.00e-140	491.00
IUUC-Fca-035558	Felis catus	77.78	2.00e-141	494.00
IUUC-Fal-036794	Ficedula albicollis	59.62	2.00e-112	398.00
IUUC-Gmo-038742	Gadus morhua	50.16	3.00e-83	301.00
IUUC-Gga-040868	Gallus gallus	59.49	1.00e-112	399.00
IUUC-Gac-041646	Gasterosteus aculeatus	50.63	8.00e-88	317.00
IUUC-Gma-044269	Glycine max	29.55	5.00e-36	145.00
IUUC-Ggo-044553	Gorilla gorilla	79.55	2.00e-146	511.00
IUUC-Hsa-046217	Homo sapiens	79.55	9.00e-146	509.00
IUUC-Hvu-047647	Hordeum vulgare	28.19	2.00e-31	129.00
IUUC-Itr-048649	Ictidomys tridecemlineatus	81.03	7.00e-149	519.00
IUUC-Lch-050134	Latimeria chalumnae	58.36	3.00e-108	384.00
IUUC-Lpe-051524	Leersia perrieri	28.99	3.00e-31	129.00
IUUC-Loc-051757	Lepisosteus oculatus	43.82	4.00e-74	271.00
IUUC-Laf-053733	Loxodonta africana	75.08	2.00e-133	468.00
IUUC-Mcc-055477	Macaca mulatta	77.30	2.00e-128	451.00
IUUC-Meu-056758	Macropus eugenii	57.91	2.00e-86	311.00
IUUC-Mtr-058616	Medicago truncatula	30.70	7.00e-36	144.00
IUUC-Mga-059637	Meleagris gallopavo	60.52	1.00e-80	292.00
IUUC-Mvi-060385	Microbotryum violaceum	24.23	5.00e-19	89.00
IUUC-Mmr-061675	Microcebus murinus	78.15	3.00e-139	487.00
IUUC-Mdo-062782	Monodelphis domestica	67.92	1.00e-117	416.00
IUUC-Mmu-064058	Mus musculus	92.02	6.00e-175	606.00
IUUC-Mac-065262	Musa acuminata	33.64	7.00e-27	114.00
IUUC-Mpu-066633	Mustela putorius furo	77.96	2.00e-129	455.00
IUUC-Mlu-067333	Myotis lucifugus	78.91	2.00e-139	488.00
IUUC-Nfi-068581	Neosartorya fischeri	25.07	3.00e-18	86.30
IUUC-Nle-069485	Nomascus leucogenys	72.61	1.00e-129	456.00
IUUC-Opr-071206	Ochotona princeps	60.18	2.00e-68	252.00
IUUC-Oan-073361	Ornithorhynchus anatinus	58.30	2.00e-86	312.00
IUUC-Ocu-073923	Oryctolagus cuniculus	77.39	7.00e-132	463.00
IUUC-Oba-075743	Oryza barthii	39.08	3.00e-26	112.00
IUUC-Obr-076879	Oryza brachyantha	28.53	5.00e-32	132.00
IUUC-Ogl-077813	Oryza glaberrima	28.37	3.00e-36	145.00
IUUC-Ogu-078196	Oryza glumaepatula	39.08	3.00e-26	112.00
IUUC-Oin-080131	Oryza indica	28.37	2.00e-36	146.00
IUUC-Olo-080613	Oryza longistaminata	35.29	3.00e-23	102.00
IUUC-Ome-081912	Oryza meridionalis	28.34	5.00e-34	138.00
IUUC-Oni-082813	Oryza nivara	40.54	1.00e-26	114.00
IUUC-Opu-083663	Oryza punctata	29.25	7.00e-38	151.00
IUUC-Oru-085102	Oryza rufipogon	28.18	4.00e-34	138.00
IUUC-Osa-086204	Oryza sativa	28.37	2.00e-36	146.00
IUUC-Ola-086541	Oryzias latipes	41.43	2.00e-68	253.00
IUUC-Olu-087776	Ostreococcus lucimarinus	30.30	3.00e-11	61.20
IUUC-Oga-088039	Otolemur garnettii	77.00	5.00e-142	496.00
IUUC-Oar-089515	Ovis aries	41.49	3.00e-49	188.00
IUUC-Ptr-091291	Pan troglodytes	79.55	2.00e-146	511.00
IUUC-Pan-092644	Papio anubis	79.23	6.00e-146	509.00
IUUC-Psi-093646	Pelodiscus sinensis	60.50	3.00e-115	407.00
IUUC-Ppa-095698	Physcomitrella patens	34.23	4.00e-41	162.00
IUUC-Pfo-096601	Poecilia formosa	50.31	8.00e-87	313.00
IUUC-Pab-098407	Pongo abelii	80.51	4.00e-148	516.00
IUUC-Pop-099193	Populus trichocarpa	28.31	2.00e-31	129.00
IUUC-Pca-100366	Procavia capensis	75.96	4.00e-130	457.00
IUUC-Ppe-101608	Prunus persica	26.56	2.00e-32	133.00
IUUC-Pva-102775	Pteropus vampyrus	77.96	3.00e-139	487.00
IUUC-Sha-106539	Sarcophilus harrisii	65.42	8.00e-113	400.00
IUUC-Spo-108326	Schizosaccharomyces pombe	25.40	8.00e-18	84.30
IUUC-Smo-108756	Selaginella moellendorffii	30.03	1.00e-32	134.00
IUUC-Sit-109771	Setaria italica	27.93	5.00e-34	138.00
IUUC-Sly-111138	Solanum lycopersicum	28.69	1.00e-35	144.00
IUUC-Stu-112425	Solanum tuberosum	29.35	3.00e-36	145.00
IUUC-Sbi-114356	Sorghum bicolor	28.42	6.00e-32	131.00
IUUC-Ssc-115256	Sus scrofa	68.37	8.00e-120	422.00
IUUC-Tgu-116774	Taeniopygia guttata	59.27	6.00e-95	340.00
IUUC-Tru-117900	Takifugu rubripes	42.94	1.00e-70	260.00
IUUC-Tsy-119540	Tarsius syrichta	80.62	1.00e-56	213.00
IUUC-Tni-120252	Tetraodon nigroviridis	48.90	2.00e-84	305.00
IUUC-Tca-121717	Theobroma cacao	40.54	1.00e-28	120.00
IUUC-Tre-122069	Trichoderma reesei	24.86	6.00e-17	82.00
IUUC-Tvi-122673	Trichoderma virens	25.60	5.00e-19	89.00
IUUC-Tae-124732	Triticum aestivum	28.72	4.00e-33	135.00
IUUC-Tme-127222	Tuber melanosporum	26.43	2.00e-22	99.80
IUUC-Ttr-129240	Tursiops truncatus	80.21	3.00e-81	295.00
IUUC-Vda-129913	Verticillium dahliae	28.37	3.00e-20	92.40
IUUC-Vvi-131718	Vitis vinifera	27.93	5.00e-35	141.00
IUUC-Xtr-132109	Xenopus tropicalis	55.66	1.00e-97	349.00
IUUC-Xma-133366	Xiphophorus maculatus	50.94	8.00e-87	313.00
IUUC-Yli-134383	Yarrowia lipolytica	26.26	2.00e-12	67.00
IUUC-Zma-135563	Zea mays	26.91	2.00e-26	113.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence