iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ago-007864

Ensembl Protein ID

AAS53017

UniProt Accession

Q756D0; YTM1_ASHGO

Genbank Protein ID

AAS53017.2

Protein Name

Ribosome biogenesis protein YTM1

Genbank Nucleotide ID

AE016818

Gene Name

YTM1; AER337W

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AGOS_AER337W	AAS53017	AAS53017

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.50e-32	107.6	140	175

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDlrtgvl 35
           gHt+ v++++f s+t+lvsG++D t+++W ++ +++
   Q: 140  GHTGAVRAVKFiSSTRLVSGGNDRTLRLWKTKNDDV 175
           8***********88***************9887776 PP

Organism

Ashbya gossypii

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MVEDKSQVKV KFFTREQDES LHVLDAPLFA PVSLKRYGLS EIINHLLGLA EPVPFDFLID 60
GQLLRCSLQD YLTRKGLSSE AVLNVEYTRA VLPPSYLKSF SNEDWVSALD VGAERIVSGS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGTAGAGG ACAAGTCGCA GGTGAAGGTA AAGTTCTTCA CGCGGGAGCA GGACGAGTCG 60
CTGCACGTTC TAGATGCTCC GCTGTTTGCT CCGGTGTCTC TGAAGCGGTA TGGGCTATCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000790--C:nuclear chromatin
GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0051276--P:chromosome organization
GO:0000460--P:maturation of 5.8S rRNA
GO:0000470--P:maturation of LSU-rRNA

KEGG

ago:AGOS_AER337W

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	30.69	4.00e-49	186.00
IUUC-Aml-001997	Ailuropoda melanoleuca	30.64	7.00e-39	152.00
IUUC-Atr-002544	Amborella trichopoda	28.76	5.00e-46	176.00
IUUC-Apl-003981	Anas platyrhynchos	31.06	3.00e-39	153.00
IUUC-Aca-004370	Anolis carolinensis	30.68	3.00e-47	180.00
IUUC-Aly-006455	Arabidopsis lyrata	32.23	1.00e-52	198.00
IUUC-Ath-006669	Arabidopsis thaliana	31.74	1.00e-49	188.00
IUUC-Acl-008177	Aspergillus clavatus	42.68	7.00e-98	348.00
IUUC-Afl-008617	Aspergillus flavus	43.12	6.00e-99	352.00
IUUC-Afu-008752	Aspergillus fumigatus	42.38	4.00e-95	339.00
IUUC-Ani-009136	Aspergillus nidulans	42.65	1.00e-95	340.00
IUUC-Ang-009701	Aspergillus niger	42.44	2.00e-92	330.00
IUUC-Aor-009884	Aspergillus oryzae	43.33	2.00e-99	353.00
IUUC-Ate-010472	Aspergillus terreus	44.00	2.00e-57	213.00
IUUC-Ame-011432	Astyanax mexicanus	29.86	6.00e-45	172.00
IUUC-Bgr-012218	Blumeria graminis	43.20	9.00e-92	328.00
IUUC-Bta-012829	Bos taurus	30.23	6.00e-41	159.00
IUUC-Bci-013953	Botrytis cinerea	40.74	4.00e-91	326.00
IUUC-Bdi-014351	Brachypodium distachyon	32.12	6.00e-49	186.00
IUUC-Bol-016190	Brassica oleracea	33.26	4.00e-52	196.00
IUUC-Bra-018095	Brassica rapa	32.60	9.00e-50	188.00
IUUC-Cel-018569	Caenorhabditis elegans	24.72	1.00e-23	102.00
IUUC-Cja-019468	Callithrix jacchus	30.00	6.00e-39	152.00
IUUC-Cfa-020471	Canis familiaris	29.77	2.00e-38	151.00
IUUC-Cpo-022260	Cavia porcellus	30.45	5.00e-38	149.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	33.66	5.00e-48	182.00
IUUC-Csa-023989	Chlorocebus sabaeus	29.77	6.00e-38	149.00
IUUC-Cho-024426	Choloepus hoffmanni	28.53	1.00e-26	112.00
IUUC-Cin-025789	Ciona intestinalis	26.80	1.00e-32	131.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	44.09	2.00e-26	109.00
IUUC-Cne-027063	Cryptococcus neoformans	25.73	1.00e-30	125.00
IUUC-Dre-027907	Danio rerio	30.00	2.00e-45	174.00
IUUC-Dno-029225	Dasypus novemcinctus	30.00	4.00e-41	159.00
IUUC-Dor-031082	Dipodomys ordii	26.82	5.00e-24	102.00
IUUC-Dse-031308	Dothistroma septosporum	39.87	4.00e-91	326.00
IUUC-Dme-032189	Drosophila melanogaster	27.19	2.00e-38	151.00
IUUC-Ete-032247	Echinops telfairi	28.18	2.00e-34	137.00
IUUC-Eca-034285	Equus caballus	30.09	8.00e-40	155.00
IUUC-Eeu-035322	Erinaceus europaeus	27.06	6.00e-31	125.00
IUUC-Fca-036114	Felis catus	30.68	3.00e-41	160.00
IUUC-Fal-036891	Ficedula albicollis	30.00	3.00e-33	133.00
IUUC-Fox-037965	Fusarium oxysporum	40.75	4.00e-89	319.00
IUUC-Fso-038244	Fusarium solani	41.27	2.00e-88	317.00
IUUC-Gmo-039040	Gadus morhua	30.63	2.00e-47	180.00
IUUC-Ggr-040093	Gaeumannomyces graminis	35.08	4.00e-66	243.00
IUUC-Gga-040610	Gallus gallus	30.68	2.00e-43	167.00
IUUC-Gac-042117	Gasterosteus aculeatus	32.58	1.00e-51	194.00
IUUC-Gma-043756	Glycine max	32.96	1.00e-51	194.00
IUUC-Ggo-045179	Gorilla gorilla	30.00	8.00e-39	152.00
IUUC-Hsa-046114	Homo sapiens	29.77	1.00e-37	148.00
IUUC-Hvu-047331	Hordeum vulgare	31.65	2.00e-44	170.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	30.23	2.00e-40	157.00
IUUC-Kpa-049304	Komagataella pastoris	55.82	9.00e-152	527.00
IUUC-Lch-050655	Latimeria chalumnae	30.14	1.00e-32	131.00
IUUC-Lpe-051675	Leersia perrieri	30.98	3.00e-48	184.00
IUUC-Loc-052868	Lepisosteus oculatus	30.23	7.00e-48	182.00
IUUC-Lma-053258	Leptosphaeria maculans	40.75	2.00e-91	328.00
IUUC-Laf-053993	Loxodonta africana	29.77	4.00e-40	156.00
IUUC-Mcc-055128	Macaca mulatta	24.37	3.00e-22	97.10
IUUC-Meu-056501	Macropus eugenii	30.26	1.00e-32	131.00
IUUC-Mor-057114	Magnaporthe oryzae	38.65	8.00e-82	295.00
IUUC-Mpo-057463	Magnaporthe poae	33.66	2.00e-28	117.00
IUUC-Mtr-058367	Medicago truncatula	30.63	1.00e-43	168.00
IUUC-Mla-059107	Melampsora laricipopulina	29.81	4.00e-50	189.00
IUUC-Mga-059745	Meleagris gallopavo	30.73	6.00e-43	166.00
IUUC-Mvi-060362	Microbotryum violaceum	30.49	6.00e-46	176.00
IUUC-Mdo-062257	Monodelphis domestica	29.32	1.00e-42	164.00
IUUC-Mmu-063546	Mus musculus	30.00	3.00e-40	157.00
IUUC-Mac-065540	Musa acuminata	31.52	2.00e-51	194.00
IUUC-Mpu-066284	Mustela putorius furo	30.23	8.00e-41	159.00
IUUC-Mlu-067241	Myotis lucifugus	30.23	7.00e-41	159.00
IUUC-Nfi-068260	Neosartorya fischeri	43.63	1.00e-96	344.00
IUUC-Ncr-068719	Neurospora crassa	41.26	8.00e-84	301.00
IUUC-Nle-068981	Nomascus leucogenys	29.55	6.00e-37	145.00
IUUC-Opr-071218	Ochotona princeps	28.47	4.00e-37	146.00
IUUC-Ont-071646	Oreochromis niloticus	31.59	2.00e-46	177.00
IUUC-Oan-073453	Ornithorhynchus anatinus	29.55	3.00e-47	180.00
IUUC-Ocu-074008	Oryctolagus cuniculus	30.00	3.00e-41	160.00
IUUC-Oba-075712	Oryza barthii	29.04	1.00e-39	155.00
IUUC-Obr-076721	Oryza brachyantha	30.67	2.00e-46	177.00
IUUC-Ogl-077229	Oryza glaberrima	31.69	1.00e-48	184.00
IUUC-Ogu-078977	Oryza glumaepatula	29.04	4.00e-39	153.00
IUUC-Oin-079683	Oryza indica	31.57	8.00e-49	185.00
IUUC-Olo-080291	Oryza longistaminata	29.87	5.00e-28	115.00
IUUC-Ome-081834	Oryza meridionalis	31.50	4.00e-48	183.00
IUUC-Oni-082507	Oryza nivara	31.12	2.00e-43	167.00
IUUC-Opu-083396	Oryza punctata	30.93	5.00e-47	179.00
IUUC-Oru-085220	Oryza rufipogon	31.12	2.00e-43	167.00
IUUC-Osa-085767	Oryza sativa	31.57	8.00e-49	185.00
IUUC-Ola-087420	Oryzias latipes	30.45	8.00e-49	185.00
IUUC-Olu-087740	Ostreococcus lucimarinus	30.89	1.00e-41	161.00
IUUC-Oga-088264	Otolemur garnettii	28.86	2.00e-38	150.00
IUUC-Oar-089335	Ovis aries	30.23	9.00e-41	158.00
IUUC-Ptr-091320	Pan troglodytes	29.77	1.00e-37	148.00
IUUC-Pan-092833	Papio anubis	30.00	2.00e-38	150.00
IUUC-Psi-093504	Pelodiscus sinensis	29.77	9.00e-40	155.00
IUUC-Pma-094189	Petromyzon marinus	30.44	3.00e-41	160.00
IUUC-Pno-094929	Phaeosphaeria nodorum	42.95	2.00e-96	343.00
IUUC-Ppa-095429	Physcomitrella patens	34.81	1.00e-59	221.00
IUUC-Pfo-096337	Poecilia formosa	30.23	3.00e-49	186.00
IUUC-Pab-097571	Pongo abelii	29.55	2.00e-37	147.00
IUUC-Pop-099977	Populus trichocarpa	32.09	4.00e-52	196.00
IUUC-Pca-100394	Procavia capensis	28.27	4.00e-31	126.00
IUUC-Ppe-101848	Prunus persica	31.02	3.00e-52	196.00
IUUC-Pva-102921	Pteropus vampyrus	31.88	3.00e-20	90.50
IUUC-Pgr-103637	Puccinia graminis	29.09	4.00e-49	186.00
IUUC-Ptt-103781	Puccinia triticina	28.42	3.00e-47	180.00
IUUC-Pte-104135	Pyrenophora teres	42.46	8.00e-95	340.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	42.37	4.00e-96	342.00
IUUC-Rno-105114	Rattus norvegicus	29.32	2.00e-39	154.00
IUUC-Sce-106401	Saccharomyces cerevisiae	73.70	0.00e+00	715.00
IUUC-Sha-107122	Sarcophilus harrisii	28.73	1.00e-38	151.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	41.31	2.00e-95	340.00
IUUC-Spo-108134	Schizosaccharomyces pombe	41.50	3.00e-95	340.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	42.18	3.00e-96	343.00
IUUC-Smo-108761	Selaginella moellendorffii	31.53	2.00e-49	187.00
IUUC-Sit-110354	Setaria italica	31.96	3.00e-51	193.00
IUUC-Sly-111023	Solanum lycopersicum	30.29	3.00e-49	187.00
IUUC-Stu-112778	Solanum tuberosum	32.48	2.00e-49	187.00
IUUC-Sar-113596	Sorex araneus	25.70	8.00e-24	102.00
IUUC-Sbi-114193	Sorghum bicolor	30.75	2.00e-49	187.00
IUUC-Sre-115002	Sporisorium reilianum	27.66	3.00e-34	137.00
IUUC-Ssc-116066	Sus scrofa	30.23	2.00e-40	157.00
IUUC-Tgu-117048	Taeniopygia guttata	30.85	5.00e-39	152.00
IUUC-Tni-119820	Tetraodon nigroviridis	30.45	3.00e-45	173.00
IUUC-Tca-121605	Theobroma cacao	31.09	8.00e-49	185.00
IUUC-Tre-121947	Trichoderma reesei	40.91	1.00e-87	314.00
IUUC-Tvi-122481	Trichoderma virens	40.91	6.00e-89	318.00
IUUC-Tae-125861	Triticum aestivum	31.76	4.00e-50	189.00
IUUC-Tur-126586	Triticum urartu	31.65	2.00e-45	174.00
IUUC-Tme-126900	Tuber melanosporum	45.43	1.00e-103	367.00
IUUC-Ttr-129041	Tursiops truncatus	25.68	4.00e-25	107.00
IUUC-Uma-129628	Ustilago maydis	27.20	2.00e-28	118.00
IUUC-Vpa-130260	Vicugna pacos	30.23	5.00e-41	159.00
IUUC-Vvi-131009	Vitis vinifera	33.04	6.00e-52	196.00
IUUC-Xtr-132083	Xenopus tropicalis	31.00	6.00e-45	172.00
IUUC-Xma-133094	Xiphophorus maculatus	30.45	3.00e-49	187.00
IUUC-Yli-134531	Yarrowia lipolytica	43.16	1.00e-93	334.00
IUUC-Zma-135509	Zea mays	31.48	5.00e-52	196.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence