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Tag Content
UUCD2 ID IUUC-Xtr-132833
UUCD1 version UUC-XeT-00346
Ensembl Protein ID ENSXETP00000028484.3
UniProt Accession F6PUX9; F6PUX9_XENTR
Genbank Protein ID ENSXETP00000028484
Protein Name Chromodomain helicase DNA-binding protein 3
Genbank Nucleotide ID AAMC01108182
Gene Name chd3
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSXETG00000012991.3 ENSXETT00000028484.3 ENSXETP00000028484.3
ENSXETG00000012991.3 ENSXETT00000028475.3 ENSXETP00000028475.3
Status Unreviewed
Classification
Family E-Value Score Start End
E3 activity/RING/PHD 3.60e-15 56.0 377 422
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/PHD
   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCrs 53
           ++C vC++gge    ++ C+ C +++H  Cl+++  e  p+ + w Cp C++
   Q: 377  DYCEVCQQGGE----IILCDTCPRAYHLVCLEPE-LERAPQGK-WSCPHCEK 422
           79*********....9******************.9999*997.******86 PP
   
Organism Xenopus tropicalis
Protein Sequence
(Fasta)
MAEEGDGEKE EDEDEEEEEE ESREQATPSR HCSPSLYFPP TASREPGSVE TDSTPPVPAA 60
ADQDDDNLSP VPSPQQPITK KKRGPKKKVK DKVKIPKAVK PRKRKKPDSD EDLRWDEGFG 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Xtr-132833|E3,PHD|Xenopus tropicalis
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GAAATGGCCG AAGAAGGGGA CGGCGAGAAG GAGGAGGATG AAGATGAAGA AGAGGAGGAG 60
GAGGAAAGCC GAGAGCAGGC GACACCGAGC CGCCATTGCA GCCCCAGCCT CTATTTCCCG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Xtr-132833|E3,PHD|Xenopus tropicalis
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger
Interpro

IPR028725--CHD4
IPR012957--CHD_C2
IPR012958--CHD_N
IPR000953--Chromo/chromo_shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR002464--DNA/RNA_helicase_DEAH_CS
IPR009462--DUF1086
IPR009463--DUF1087
IPR014001--Helicase_ATP-bd
IPR009071--HMG_box_dom
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD
PROSITE

PS50013--CHROMO_2
PS00690--DEAH_ATP_HELICASE
PS51192--HELICASE_ATP_BIND_1
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2
Pfam

PF08074--CHDCT2
PF08073--CHDNT
PF00385--Chromo
PF06461--DUF1086
PF06465--DUF1087
PF00628--PHD
PF00176--SNF2_N
SMART

SM00298--CHROMO
SM00487--DEXDc
SM01146--DUF1086
SM01147--DUF1087
SM00249--PHD
Gene Ontology

GO:0016581--C:NuRD complex
GO:0005524--F:ATP binding
GO:0008026--F:ATP-dependent helicase activity
GO:0003677--F:DNA binding
GO:0008270--F:zinc ion binding
GO:0007417--P:central nervous system development
GO:0006325--P:chromatin organization
GO:0048589--P:developmental growth
GO:0006355--P:regulation of transcription, DNA-templated
GO:0051225--P:spindle assembly
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aca-004560 Anolis carolinensis 73.25 0.00e+00 2365.00
IUUC-Ame-011352 Astyanax mexicanus 73.25 0.00e+00 1873.00
IUUC-Bta-012868 Bos taurus 70.24 0.00e+00 2387.00
IUUC-Cfa-021055 Canis familiaris 70.95 0.00e+00 2369.00
IUUC-Cpo-021523 Cavia porcellus 70.08 0.00e+00 2387.00
IUUC-Csa-024136 Chlorocebus sabaeus 71.67 0.00e+00 2328.00
IUUC-Dre-028043 Danio rerio 72.98 0.00e+00 1860.00
IUUC-Dor-030167 Dipodomys ordii 71.33 0.00e+00 1934.00
IUUC-Ete-032757 Echinops telfairi 69.31 0.00e+00 2199.00
IUUC-Eeu-034777 Erinaceus europaeus 64.83 0.00e+00 1944.00
IUUC-Fca-036043 Felis catus 71.17 0.00e+00 2367.00
IUUC-Gga-040216 Gallus gallus 64.22 0.00e+00 2070.00
IUUC-Gac-041375 Gasterosteus aculeatus 66.93 0.00e+00 2332.00
IUUC-Ggo-045538 Gorilla gorilla 71.03 0.00e+00 2335.00
IUUC-Hsa-045916 Homo sapiens 70.89 0.00e+00 2332.00
IUUC-Itr-048463 Ictidomys tridecemlineatus 72.62 0.00e+00 2347.00
IUUC-Lch-050343 Latimeria chalumnae 70.34 0.00e+00 1820.00
IUUC-Loc-052383 Lepisosteus oculatus 73.25 0.00e+00 1846.00
IUUC-Laf-053870 Loxodonta africana 76.67 0.00e+00 2230.00
IUUC-Mcc-055499 Macaca mulatta 65.56 0.00e+00 2194.00
IUUC-Meu-056292 Macropus eugenii 66.17 0.00e+00 998.00
IUUC-Mmr-061223 Microcebus murinus 70.78 0.00e+00 2350.00
IUUC-Mdo-062971 Monodelphis domestica 70.28 0.00e+00 2260.00
IUUC-Mmu-063920 Mus musculus 70.31 0.00e+00 2351.00
IUUC-Mpu-065809 Mustela putorius furo 74.70 0.00e+00 2233.00
IUUC-Mlu-067355 Myotis lucifugus 69.65 0.00e+00 2375.00
IUUC-Nle-069842 Nomascus leucogenys 71.02 0.00e+00 2294.00
IUUC-Opr-070960 Ochotona princeps 71.11 0.00e+00 2365.00
IUUC-Ocu-074438 Oryctolagus cuniculus 68.48 0.00e+00 2232.00
IUUC-Oga-088374 Otolemur garnettii 71.78 0.00e+00 2361.00
IUUC-Oar-089784 Ovis aries 71.03 0.00e+00 2360.00
IUUC-Ptr-090799 Pan troglodytes 71.08 0.00e+00 2337.00
IUUC-Pfo-096265 Poecilia formosa 70.17 0.00e+00 1842.00
IUUC-Pab-098174 Pongo abelii 68.63 0.00e+00 2195.00
IUUC-Rno-104884 Rattus norvegicus 71.10 0.00e+00 2269.00
IUUC-Sha-107233 Sarcophilus harrisii 68.81 0.00e+00 2334.00
IUUC-Ssc-115751 Sus scrofa 71.82 0.00e+00 2366.00
IUUC-Tgu-117484 Taeniopygia guttata 66.56 0.00e+00 1957.00
IUUC-Tru-118648 Takifugu rubripes 70.46 0.00e+00 1899.00
IUUC-Tni-120039 Tetraodon nigroviridis 71.54 0.00e+00 1876.00
IUUC-Tbe-128117 Tupaia belangeri 79.77 0.00e+00 1060.00
Created Date 25-Jun-2017

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