iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Dno-030032

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Recombination activating protein 1

Genbank Nucleotide ID

AY249886

Gene Name

RAG1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSDNOG00000031700.1	ENSDNOT00000049769.1	ENSDNOP00000021974.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	2.10e-07	31.3	66	127

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 4    eeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrli 65
           + + CpI l   r+ v +p+G+ + +++I k +++ g++cPv+++ l e++l P ++ +r i
   Q: 66   SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREI 127
           5689*****************************999999*****************999977 PP

Organism

Dasypus novemcinctus

Protein Sequence
(Fasta)

MSLLNCENSC GSSQPESDCC AAMASSCGAA AKDDSVSGTA STGTLTGSFM EEIQGYDVEF 60
DPPLESKYEC PICLMALREA VQTPCGHRFC KACIIKSIRD AGHKCPVDNE ILLENQLFPD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGCGGAGAAG GCGGAAACCA GCGCGTCCTT GGCTGGCGTT CGCACTCCGG GCGGCCCTCG 60
GACCCGGCGG CGGCGGCCTT CCGGCGGGGA GATTGGCGTC CGGGCCTCCT AGTCTGGGAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0233--DNA recombination
KW-0238--DNA-binding
KW-0539--Nucleus

Interpro

IPR024627--RAG1
IPR019485--RAG1_Znf
IPR023336--RAG_nonamer-bd_dom
IPR013087--Znf_C2H2_type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS51487--NBD
PS51765--ZF_RAG1
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF12940--RAG1
PF10426--zf-RAG1

SMART

SM00184--RING

Gene Ontology

GO:0005634--C:nucleus
GO:0004519--F:endonuclease activity
GO:0043565--F:sequence-specific DNA binding
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0033151--P:V(D)J recombination

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001262	Ailuropoda melanoleuca	90.49	1.00e-157	550.00
IUUC-Apl-004062	Anas platyrhynchos	70.24	8.00e-137	480.00
IUUC-Aca-004636	Anolis carolinensis	69.76	1.00e-122	433.00
IUUC-Ame-011682	Astyanax mexicanus	49.12	9.00e-81	294.00
IUUC-Bta-012692	Bos taurus	86.85	2.00e-160	558.00
IUUC-Cja-019426	Callithrix jacchus	85.28	5.00e-153	534.00
IUUC-Cfa-020948	Canis familiaris	89.57	8.00e-156	543.00
IUUC-Cpo-021378	Cavia porcellus	89.63	3.00e-161	561.00
IUUC-Csa-024045	Chlorocebus sabaeus	85.28	5.00e-154	537.00
IUUC-Cho-024973	Choloepus hoffmanni	77.38	1.00e-110	393.00
IUUC-Csv-026300	Ciona savignyi	40.32	7.00e-47	180.00
IUUC-Dre-027557	Danio rerio	53.35	6.00e-92	331.00
IUUC-Dor-030790	Dipodomys ordii	84.36	2.00e-153	535.00
IUUC-Dme-031921	Drosophila melanogaster	38.24	9.00e-16	78.20
IUUC-Ete-032952	Echinops telfairi	92.62	3.00e-65	243.00
IUUC-Eca-033924	Equus caballus	82.93	4.00e-135	474.00
IUUC-Eeu-034734	Erinaceus europaeus	89.36	9.00e-139	486.00
IUUC-Fca-036222	Felis catus	78.29	8.00e-125	440.00
IUUC-Fal-036834	Ficedula albicollis	71.48	9.00e-107	380.00
IUUC-Fox-037935	Fusarium oxysporum	31.34	3.00e-21	96.70
IUUC-Gmo-039061	Gadus morhua	61.69	1.00e-87	317.00
IUUC-Ggr-040084	Gaeumannomyces graminis	25.94	7.00e-11	62.40
IUUC-Gga-040599	Gallus gallus	71.21	2.00e-139	488.00
IUUC-Gac-041977	Gasterosteus aculeatus	63.09	9.00e-86	310.00
IUUC-Ggo-044508	Gorilla gorilla	75.61	6.00e-130	457.00
IUUC-Hsa-046349	Homo sapiens	85.28	2.00e-162	565.00
IUUC-Itr-047966	Ictidomys tridecemlineatus	85.89	6.00e-161	560.00
IUUC-Lch-049821	Latimeria chalumnae	60.17	3.00e-111	395.00
IUUC-Loc-051995	Lepisosteus oculatus	56.95	2.00e-86	313.00
IUUC-Laf-054115	Loxodonta africana	87.12	3.00e-162	564.00
IUUC-Mcc-055298	Macaca mulatta	84.66	1.00e-152	533.00
IUUC-Mpo-057517	Magnaporthe poae	27.52	2.00e-12	67.40
IUUC-Mga-059340	Meleagris gallopavo	70.91	2.00e-131	462.00
IUUC-Mvi-060553	Microbotryum violaceum	27.23	4.00e-13	69.30
IUUC-Mmr-061063	Microcebus murinus	89.57	9.00e-157	546.00
IUUC-Mdo-062075	Monodelphis domestica	75.00	2.00e-145	508.00
IUUC-Mmu-063780	Mus musculus	82.82	7.00e-141	493.00
IUUC-Mpu-065748	Mustela putorius furo	88.96	9.00e-159	553.00
IUUC-Mlu-067888	Myotis lucifugus	84.36	2.00e-151	528.00
IUUC-Ncr-068632	Neurospora crassa	28.50	1.00e-16	81.30
IUUC-Nle-069234	Nomascus leucogenys	85.28	4.00e-155	541.00
IUUC-Opr-070393	Ochotona princeps	87.04	8.00e-84	304.00
IUUC-Ont-072459	Oreochromis niloticus	49.00	6.00e-91	328.00
IUUC-Oan-073578	Ornithorhynchus anatinus	79.64	7.00e-150	523.00
IUUC-Ocu-074201	Oryctolagus cuniculus	87.73	2.00e-158	551.00
IUUC-Ola-087319	Oryzias latipes	59.92	1.00e-89	323.00
IUUC-Olu-087748	Ostreococcus lucimarinus	28.85	5.00e-08	52.00
IUUC-Oga-087936	Otolemur garnettii	84.97	5.00e-153	534.00
IUUC-Oar-089379	Ovis aries	85.93	2.00e-160	558.00
IUUC-Ptr-090758	Pan troglodytes	85.89	6.00e-155	540.00
IUUC-Pan-092590	Papio anubis	84.97	4.00e-153	534.00
IUUC-Psi-093948	Pelodiscus sinensis	70.18	3.00e-129	455.00
IUUC-Pma-094434	Petromyzon marinus	51.79	4.00e-77	282.00
IUUC-Pfo-096912	Poecilia formosa	56.70	2.00e-91	330.00
IUUC-Pab-097651	Pongo abelii	85.89	1.00e-155	543.00
IUUC-Pca-100958	Procavia capensis	80.23	4.00e-81	294.00
IUUC-Pva-103247	Pteropus vampyrus	91.27	1.00e-128	453.00
IUUC-Pte-104279	Pyrenophora teres	26.94	1.00e-11	64.70
IUUC-Rno-104994	Rattus norvegicus	79.75	9.00e-143	500.00
IUUC-Sha-106494	Sarcophilus harrisii	76.07	6.00e-148	517.00
IUUC-Sar-113375	Sorex araneus	81.96	7.00e-146	510.00
IUUC-Sre-115218	Sporisorium reilianum	26.32	8.00e-14	72.40
IUUC-Ssc-115417	Sus scrofa	88.69	6.00e-164	570.00
IUUC-Tgu-117232	Taeniopygia guttata	70.61	1.00e-123	436.00
IUUC-Tru-118321	Takifugu rubripes	58.67	1.00e-89	323.00
IUUC-Tni-120475	Tetraodon nigroviridis	61.60	2.00e-85	309.00
IUUC-Tbe-127719	Tupaia belangeri	69.82	1.00e-119	423.00
IUUC-Ttr-129264	Tursiops truncatus	90.12	2.00e-126	445.00
IUUC-Uma-129620	Ustilago maydis	26.52	6.00e-16	79.30
IUUC-Vpa-130244	Vicugna pacos	90.12	2.00e-128	452.00
IUUC-Xtr-131948	Xenopus tropicalis	60.06	1.00e-115	410.00
IUUC-Xma-133132	Xiphophorus maculatus	57.04	1.00e-91	330.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence