iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Obr-076138

Ensembl Protein ID

OB01G41960.1

UniProt Accession

J3L4P0; J3L4P0_ORYBR

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OB01G41960	OB01G41960.1	OB01G41960.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.60e-36	123.4	142	180
UBD/Beta-Prp	7.60e-79	265.7	12	185

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH + +  ++f +d + +v+G+ D+++kvWDl+ g+ll+
   Q: 142  GHRGAIKTIRFtPDgRWVVTGGEDNVVKVWDLTAGKLLH 180
           8***********99999******************9986 PP

UBD/Beta-Prp

   S: 89   tlkghedsvlslsfsp.sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvy 184
            + +h+++v+sl + + s+ ++++Gs+dr +++w + ++  l   lsgh+g+v  v+++  + l+ +Gs ++ ++lWdl+ +k++r ltg h +s +
   Q: 12   EFVAHDAEVRSLVIGKkSSRVFITGSSDRKVNLWAIGKQAPLL-SLSGHTGSVEAVEFDTAEVLVLAGSSNGSIKLWDLEEAKVVRSLTG-HRSSCT 106
           5678************666************************.*********************************************9.****** PP
   S: 185  slsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlh 263
           s++f++ g++++sgs d+++k+wd++++ c++t++gh+  +k +rf+p++ ++v+g++D+++++Wdl+ g+ll+ ++ h
   Q: 107  SVEFHPFGEFFASGSSDTDLKIWDIKKKGCIHTYKGHRGAIKTIRFTPDGRWVVTGGEDNVVKVWDLTAGKLLHDFKFH 185
           *************************************************************************999765 PP

Organism

Oryza brachyantha

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MDPEKRGYRL QEFVAHDAEV RSLVIGKKSS RVFITGSSDR KVNLWAIGKQ APLLSLSGHT 60
GSVEAVEFDT AEVLVLAGSS NGSIKLWDLE EAKVVRSLTG HRSSCTSVEF HPFGEFFASG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGACCCCG AGAAGCGCGG ATACAGGCTC CGTATCCTTT TTTTGCTGCT GCTGCTGCTG 60
CGGGTTCCCC TTCTAGTTTT GCCCGGTTCT TGATCCGATT TGGCTCGAAG GAGGAGGGAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

KEGG

obr:102709619

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000869	Aegilops tauschii	68.15	0.00e+00	1160.00
IUUC-Bdi-014531	Brachypodium distachyon	78.14	0.00e+00	1315.00
IUUC-Cne-027087	Cryptococcus neoformans	29.30	7.00e-31	127.00
IUUC-Cme-027305	Cyanidioschyzon merolae	31.60	8.00e-23	101.00
IUUC-Gma-043341	Glycine max	45.26	0.00e+00	684.00
IUUC-Hvu-047729	Hordeum vulgare	77.17	0.00e+00	976.00
IUUC-Mtr-057706	Medicago truncatula	47.99	7.00e-151	527.00
IUUC-Mac-065245	Musa acuminata	55.83	0.00e+00	639.00
IUUC-Oba-075016	Oryza barthii	87.08	0.00e+00	1316.00
IUUC-Ogl-077401	Oryza glaberrima	90.94	0.00e+00	1529.00
IUUC-Ogu-078062	Oryza glumaepatula	85.80	0.00e+00	1458.00
IUUC-Oin-080042	Oryza indica	85.57	0.00e+00	1457.00
IUUC-Olo-080713	Oryza longistaminata	90.20	0.00e+00	1356.00
IUUC-Ome-081192	Oryza meridionalis	86.58	0.00e+00	1269.00
IUUC-Oni-082473	Oryza nivara	85.76	0.00e+00	1448.00
IUUC-Opu-083293	Oryza punctata	82.19	0.00e+00	1341.00
IUUC-Oru-085183	Oryza rufipogon	85.57	0.00e+00	1458.00
IUUC-Osa-085801	Oryza sativa	90.82	0.00e+00	1529.00
IUUC-Pma-094425	Petromyzon marinus	32.46	2.00e-33	135.00
IUUC-Pno-094815	Phaeosphaeria nodorum	29.21	4.00e-27	114.00
IUUC-Sit-110364	Setaria italica	81.32	0.00e+00	1303.00
IUUC-Sbi-114389	Sorghum bicolor	71.99	0.00e+00	1192.00
IUUC-Tae-125511	Triticum aestivum	78.71	0.00e+00	1319.00
IUUC-Tur-126181	Triticum urartu	73.46	0.00e+00	1235.00
IUUC-Tme-127031	Tuber melanosporum	31.06	1.00e-29	123.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence