iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Aly-005410

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

ATCUL1

Genbank Nucleotide ID

GL348718

Gene Name

CUL1; ARALYDRAFT_911957

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
scaffold_604014.1	scaffold_604014.1	scaffold_604014.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/Cullin	1.30e-150	503.7	36	641

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/Cullin

   S: 16   kkeyeelytavynlclsk....vgaklYkklkevleefi.kqvkkkveesedeqlLktynreWekfreqlkvlrkifayldrtyvkkskkvs 102
            ++y+ lyt +yn+c++k    ++++lY+k +e+ ee+i   v     e++de +L+ +++ W +++  +  l + f yldr+++ + +++ 
   Q: 36   SEQYMMLYTTIYNMCTQKpphdYSQQLYDKYREAFEEYInSTVLPALREKHDEYMLRELVKRWSNHKVMVRWLSRFFYYLDRYFIAR-RSLP 126
           689***************9*99*****************88999*******************************************.9*** PP
   S: 103  evrkLaldlwrkeivedikkrllelllklieaeRkgeavdrrllsgvveslveLslnklaiykesFEakfleatqefykaesaeflqenevd 194
           + ++++l  +r+ + +++++++ e+++ l+ +eR+ge++dr ll++v   +ve+++ + + y+e+FE+  l+ t+ +y++++++ +qe ++ 
   Q: 127  PLNEVGLTCFRDLVYNELHSKVKEAVIALVDKEREGEQIDRALLKNVLDIYVEIGMGQMERYEEDFESFMLQDTSSYYSRKASSWIQEDSCP 218
           ******************************************************************************************** PP
   S: 195  eYlkkvearlneeeeraaryleestetkLlevvekeliakhlesll....aelvallrdkktedlsrmykLlsrvlngleellkeleshike 282
           +Y+ k e+ l++e er+ +yl++s+e kL+e+v++el++ ++ +ll    +++ allrd+k +dlsrmy+L +++  gle++++ +++h+  
   Q: 219  DYMLKSEECLKKERERVTHYLHSSSEPKLVEKVQHELLVVYASQLLekehSGCRALLRDDKVDDLSRMYRLYHKIVRGLEPVANIFKQHVTA 310
           **************************************9999999989889***************************************** PP
   S: 283  qgkaaltaeekek..........dpkkyVerllelknklqklvseaFnndakFlkaldkafetfvnknsvlkaakspEllAryiDqlLrks. 363
           +g+++++++e +           + +  +++++el++k+   v e+F+n + F kal++afe f nk+  +  + s+EllA ++D+ L+k+ 
   Q: 311  EGNTLVQQAEDTAtnqaantasvQEQVLIRKVIELHDKYMVYVTECFQNHTLFHKALKEAFEIFCNKT--VAGSSSAELLATFCDNILKKGg 400
           *******54444445788888886689*****************************************..7779999*************** PP
   S: 364  skglteeeleaqldkvllvfkyisekdvFekyYkkhLakRLlsgksasseaEesviekLkeecgaeftskLerMfqdlkvSedlnrqFkeek 455
           s +l +e +e++l+kv+ ++ yis+kd+F ++Y+k La+RLl + sa ++ E+s+++kLk++cg +ftsk+e+M++dl + ++ ++ F++  
   Q: 401  SEKLSDEAIEDTLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQNSFEDYL 492
           *****************************************************************************************886 PP
   S: 456  .enteesesvelsvlvLsagaWptasetekvsLPaelektiekfeefYlekhsgRkLqWqhtlgraelkaelkkgkyelqVstfQmavLLaf 546
            +n  ++++++l+v vL++g+Wp + +   ++LP+e+ k +e f+ fY+ k ++RkL+W ++lg+++++ +++++  el Vst+Q+avLL+f
   Q: 493  gNNPAANPGIDLTVTVLTTGFWPSYKSFD-INLPSEMIKCVEVFKGFYETKTKHRKLTWIYSLGTCHINGKFDQKSIELIVSTYQAAVLLLF 583
           2566788******************7755.************************************************************** PP
   S: 547  nnsekvsveelkkatelpeeeLrrtlqsLvsskkqvlkkepeskeieeedlfsvNqef 604
           n+++k+ + e+ ++ +l++e+L r l sL + k ++l kep +k ++++d+f +N++f
   Q: 584  NTTDKLNYTEILAQLNLSHEDLVRLLHSLSCAKYKILLKEPSTKTVSQTDVFEFNSKF 641
           *******************************************************998 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MERKTIDLEQ GWDYMQTGIT KLKRILEGLP EPAFDSEQYM MLYTTIYNMC TQKPPHDYSQ 60
QLYDKYREAF EEYINSTVLP ALREKHDEYM LRELVKRWSN HKVMVRWLSR FFYYLDRYFI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTTGAAAAGT TGTTTGTCAA CATGGAGCGC AAGACTATTG ACTTGGAGCA AGGATGGGAC 60
TATATGCAGA CTGGGATTAC CAAGCTGAAA CGGATTCTGG AAGGATTGCC TGAGCCAGCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR016157--Cullin_CS
IPR016158--Cullin_homology
IPR001373--Cullin_N
IPR019559--Cullin_neddylation_domain
IPR016159--Cullin_repeat-like_dom
IPR011991--WHTH_DNA-bd_dom

PROSITE

PS01256--CULLIN_1
PS50069--CULLIN_2

Pfam

PF00888--Cullin
PF10557--Cullin_Nedd8

SMART

SM00182--CULLIN
SM00884--Cullin_Nedd8

Gene Ontology

GO:0000794--C:condensed nuclear chromosome
GO:0031461--C:cullin-RING ubiquitin ligase complex
GO:0005829--C:cytosol
GO:0009524--C:phragmoplast
GO:0005819--C:spindle
GO:0009793--P:embryo development ending in seed dormancy
GO:0048366--P:leaf development
GO:0010087--P:phloem or xylem histogenesis
GO:0042752--P:regulation of circadian rhythm
GO:0009733--P:response to auxin
GO:0009753--P:response to jasmonic acid
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

aly:ARALYDRAFT_911957

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000358	Aegilops tauschii	77.33	0.00e+00	1197.00
IUUC-Atr-002822	Amborella trichopoda	81.76	0.00e+00	1256.00
IUUC-Ath-006626	Arabidopsis thaliana	97.97	0.00e+00	1471.00
IUUC-Bdi-014240	Brachypodium distachyon	80.54	0.00e+00	1241.00
IUUC-Bol-016311	Brassica oleracea	96.34	0.00e+00	1451.00
IUUC-Bra-017061	Brassica rapa	96.21	0.00e+00	1446.00
IUUC-Cel-018294	Caenorhabditis elegans	29.51	6.00e-89	321.00
IUUC-Cre-022585	Chlamydomonas reinhardtii	64.11	0.00e+00	969.00
IUUC-Csv-026083	Ciona savignyi	31.16	2.00e-102	366.00
IUUC-Cne-026919	Cryptococcus neoformans	29.65	5.00e-95	341.00
IUUC-Gma-043668	Glycine max	83.11	0.00e+00	1287.00
IUUC-Hvu-047383	Hordeum vulgare	80.81	0.00e+00	1248.00
IUUC-Lpe-051606	Leersia perrieri	80.25	0.00e+00	1217.00
IUUC-Lma-053191	Leptosphaeria maculans	29.27	1.00e-88	320.00
IUUC-Mtr-058635	Medicago truncatula	81.62	0.00e+00	1267.00
IUUC-Mla-059021	Melampsora laricipopulina	30.47	2.00e-92	332.00
IUUC-Mac-065440	Musa acuminata	82.30	0.00e+00	1271.00
IUUC-Oba-075744	Oryza barthii	80.27	0.00e+00	1236.00
IUUC-Obr-076260	Oryza brachyantha	79.05	0.00e+00	1212.00
IUUC-Ogl-077579	Oryza glaberrima	79.19	0.00e+00	1216.00
IUUC-Ogu-078249	Oryza glumaepatula	79.49	0.00e+00	1229.00
IUUC-Oin-079171	Oryza indica	79.19	0.00e+00	1216.00
IUUC-Olo-080532	Oryza longistaminata	79.62	0.00e+00	1231.00
IUUC-Ome-081358	Oryza meridionalis	79.62	0.00e+00	1231.00
IUUC-Oni-082083	Oryza nivara	79.62	0.00e+00	1231.00
IUUC-Opu-083214	Oryza punctata	80.68	0.00e+00	1241.00
IUUC-Oru-085124	Oryza rufipogon	79.62	0.00e+00	1231.00
IUUC-Osa-085572	Oryza sativa	80.27	0.00e+00	1237.00
IUUC-Olu-087721	Ostreococcus lucimarinus	55.18	0.00e+00	818.00
IUUC-Pma-094502	Petromyzon marinus	30.44	2.00e-98	352.00
IUUC-Pno-095067	Phaeosphaeria nodorum	29.54	2.00e-96	346.00
IUUC-Ppa-095864	Physcomitrella patens	79.73	0.00e+00	1189.00
IUUC-Pop-100087	Populus trichocarpa	83.65	0.00e+00	1274.00
IUUC-Ppe-101349	Prunus persica	84.96	0.00e+00	1346.00
IUUC-Pte-104257	Pyrenophora teres	29.54	2.00e-94	339.00
IUUC-Pyt-104795	Pyrenophora triticirepentis	29.54	2.00e-94	339.00
IUUC-Smo-109541	Selaginella moellendorffii	78.88	0.00e+00	1161.00
IUUC-Sit-110264	Setaria italica	79.80	0.00e+00	1150.00
IUUC-Sly-111067	Solanum lycopersicum	83.78	0.00e+00	1290.00
IUUC-Stu-112374	Solanum tuberosum	82.18	0.00e+00	1222.00
IUUC-Sbi-114502	Sorghum bicolor	80.54	0.00e+00	1241.00
IUUC-Tca-121191	Theobroma cacao	89.02	0.00e+00	1359.00
IUUC-Tae-125618	Triticum aestivum	77.86	0.00e+00	1233.00
IUUC-Tur-126475	Triticum urartu	72.16	0.00e+00	1156.00
IUUC-Vvi-131423	Vitis vinifera	84.19	0.00e+00	1300.00
IUUC-Yli-134486	Yarrowia lipolytica	28.57	8.00e-83	301.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence