iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099977

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Ribosome biogenesis protein WDR12 homolog

Genbank Nucleotide ID

CM000353

Gene Name

POPTRDRAFT_778605; POPTR_0017s12880g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0017s12880	POPTR_0017s12880.1	POPTR_0017s12880.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.50e-31	107.0	361	395

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd..tllvsGsdDgtikvWDlrtg 33
           H+++++++++ s+   +l+s+s+Dg++++WDlrt 
   Q: 361  HNSWISACKWhSEslFHLLSASYDGKLMLWDLRTA 395
           9*********96656679**************986 PP

Organism

Populus trichocarpa

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MGTGMDMDSD VEERRVQVRF ITKLKPPFKV PNTSIAIPAN LTRLGLSTIV NSLLKAGDDE 60
WESQPFDFLI DGELVRLPLE QFLLAKGISA EKVLEIEYTR AVVLQKEDEP SLHDDWVSAV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTTTGTTTCT CTCGTCTCTC TGCGTGTAAT TGAAGAAGAA GACATGGGCA CGGGCATGGA 60
CATGGACAGT GATGTAGAAG AGAGGCGAGT TCAAGTACGA TTTATAACAA AATTGAAGCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000460--P:maturation of 5.8S rRNA
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000470--P:maturation of LSU-rRNA
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

pop:POPTR_0017s12880g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	65.98	1.00e-171	595.00
IUUC-Aml-001997	Ailuropoda melanoleuca	35.24	2.00e-60	226.00
IUUC-Atr-002544	Amborella trichopoda	60.50	1.00e-154	539.00
IUUC-Apl-003981	Anas platyrhynchos	36.16	1.00e-59	223.00
IUUC-Aca-004370	Anolis carolinensis	35.08	2.00e-67	249.00
IUUC-Aly-006455	Arabidopsis lyrata	71.99	0.00e+00	667.00
IUUC-Ath-006669	Arabidopsis thaliana	71.76	0.00e+00	649.00
IUUC-Ago-007864	Ashbya gossypii	30.95	4.00e-49	188.00
IUUC-Acl-008177	Aspergillus clavatus	29.69	2.00e-39	155.00
IUUC-Afl-008617	Aspergillus flavus	30.32	2.00e-37	149.00
IUUC-Afu-008752	Aspergillus fumigatus	27.80	5.00e-37	148.00
IUUC-Ani-009136	Aspergillus nidulans	32.56	2.00e-41	162.00
IUUC-Ang-009701	Aspergillus niger	30.33	3.00e-37	149.00
IUUC-Aor-009884	Aspergillus oryzae	30.32	3.00e-38	152.00
IUUC-Ame-011432	Astyanax mexicanus	33.98	1.00e-68	253.00
IUUC-Bgr-012218	Blumeria graminis	27.49	3.00e-36	145.00
IUUC-Bta-012829	Bos taurus	34.86	8.00e-63	233.00
IUUC-Bci-013953	Botrytis cinerea	26.71	5.00e-39	155.00
IUUC-Bdi-014351	Brachypodium distachyon	64.91	1.00e-162	565.00
IUUC-Bol-016514	Brassica oleracea	70.83	8.00e-176	609.00
IUUC-Bra-016988	Brassica rapa	70.37	2.00e-175	607.00
IUUC-Cel-018569	Caenorhabditis elegans	24.08	3.00e-30	125.00
IUUC-Cja-019468	Callithrix jacchus	36.06	4.00e-61	228.00
IUUC-Cfa-020471	Canis familiaris	35.34	2.00e-59	222.00
IUUC-Cpo-022260	Cavia porcellus	36.06	4.00e-62	231.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	38.75	9.00e-63	233.00
IUUC-Csa-023989	Chlorocebus sabaeus	35.82	6.00e-61	227.00
IUUC-Cho-024426	Choloepus hoffmanni	33.88	1.00e-44	173.00
IUUC-Cin-025789	Ciona intestinalis	30.33	2.00e-51	196.00
IUUC-Cne-027063	Cryptococcus neoformans	24.79	3.00e-24	105.00
IUUC-Dre-027907	Danio rerio	35.18	3.00e-70	258.00
IUUC-Dno-029225	Dasypus novemcinctus	34.86	2.00e-61	229.00
IUUC-Dor-031082	Dipodomys ordii	28.20	3.00e-36	145.00
IUUC-Dse-031308	Dothistroma septosporum	30.09	3.00e-43	168.00
IUUC-Dme-032189	Drosophila melanogaster	31.76	7.00e-52	197.00
IUUC-Ete-032247	Echinops telfairi	32.69	7.00e-55	207.00
IUUC-Eca-034285	Equus caballus	34.86	1.00e-61	229.00
IUUC-Eeu-035322	Erinaceus europaeus	31.92	2.00e-52	198.00
IUUC-Fca-036114	Felis catus	35.10	7.00e-62	230.00
IUUC-Fal-036891	Ficedula albicollis	35.38	9.00e-54	203.00
IUUC-Fox-037965	Fusarium oxysporum	24.58	2.00e-31	129.00
IUUC-Fso-038244	Fusarium solani	24.69	2.00e-32	132.00
IUUC-Gmo-039040	Gadus morhua	35.58	9.00e-70	256.00
IUUC-Ggr-040093	Gaeumannomyces graminis	24.54	3.00e-24	106.00
IUUC-Gga-040610	Gallus gallus	34.86	5.00e-64	237.00
IUUC-Gac-042117	Gasterosteus aculeatus	36.32	3.00e-67	248.00
IUUC-Gma-043967	Glycine max	68.74	0.00e+00	642.00
IUUC-Ggo-045179	Gorilla gorilla	35.58	1.00e-60	226.00
IUUC-Hsa-046114	Homo sapiens	35.82	3.00e-61	228.00
IUUC-Hvu-047331	Hordeum vulgare	66.08	1.00e-147	515.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	35.58	5.00e-63	234.00
IUUC-Kpa-049304	Komagataella pastoris	29.17	1.00e-43	169.00
IUUC-Lch-050655	Latimeria chalumnae	34.30	2.00e-49	188.00
IUUC-Lpe-051675	Leersia perrieri	65.49	4.00e-167	580.00
IUUC-Loc-052868	Lepisosteus oculatus	35.34	6.00e-68	250.00
IUUC-Lma-053258	Leptosphaeria maculans	32.37	6.00e-44	172.00
IUUC-Laf-053993	Loxodonta africana	34.86	1.00e-62	233.00
IUUC-Mcc-055128	Macaca mulatta	28.92	4.00e-40	157.00
IUUC-Meu-056501	Macropus eugenii	36.86	6.00e-53	200.00
IUUC-Mor-057114	Magnaporthe oryzae	26.01	7.00e-38	150.00
IUUC-Mpo-057463	Magnaporthe poae	33.55	2.00e-16	78.20
IUUC-Mtr-058367	Medicago truncatula	69.27	3.00e-177	613.00
IUUC-Mla-059107	Melampsora laricipopulina	26.19	3.00e-31	129.00
IUUC-Mga-059745	Meleagris gallopavo	35.56	8.00e-61	227.00
IUUC-Mvi-060362	Microbotryum violaceum	24.13	3.00e-29	122.00
IUUC-Mdo-062257	Monodelphis domestica	37.32	2.00e-69	255.00
IUUC-Mmu-063546	Mus musculus	35.10	1.00e-62	233.00
IUUC-Mac-065540	Musa acuminata	67.06	2.00e-170	591.00
IUUC-Mpu-066284	Mustela putorius furo	35.34	9.00e-63	233.00
IUUC-Mlu-067241	Myotis lucifugus	35.82	2.00e-63	235.00
IUUC-Nfi-068260	Neosartorya fischeri	28.11	1.00e-39	156.00
IUUC-Ncr-068719	Neurospora crassa	27.09	9.00e-32	130.00
IUUC-Nle-068981	Nomascus leucogenys	35.58	6.00e-60	224.00
IUUC-Opr-071218	Ochotona princeps	33.42	1.00e-56	213.00
IUUC-Ont-071646	Oreochromis niloticus	34.38	6.00e-63	234.00
IUUC-Oan-073453	Ornithorhynchus anatinus	35.10	3.00e-70	258.00
IUUC-Ocu-074008	Oryctolagus cuniculus	35.58	2.00e-63	235.00
IUUC-Oba-075712	Oryza barthii	55.14	2.00e-129	455.00
IUUC-Obr-076721	Oryza brachyantha	64.57	6.00e-167	579.00
IUUC-Ogl-077229	Oryza glaberrima	64.95	9.00e-166	575.00
IUUC-Ogu-078977	Oryza glumaepatula	55.14	1.00e-129	456.00
IUUC-Oin-079683	Oryza indica	64.95	2.00e-165	574.00
IUUC-Olo-080291	Oryza longistaminata	54.13	7.00e-88	316.00
IUUC-Ome-081834	Oryza meridionalis	65.65	5.00e-167	580.00
IUUC-Oni-082507	Oryza nivara	62.62	9.00e-156	542.00
IUUC-Opu-083396	Oryza punctata	64.49	2.00e-165	575.00
IUUC-Oru-085220	Oryza rufipogon	62.62	5.00e-156	543.00
IUUC-Osa-085767	Oryza sativa	64.95	2.00e-165	574.00
IUUC-Ola-087420	Oryzias latipes	35.34	1.00e-69	256.00
IUUC-Olu-087740	Ostreococcus lucimarinus	32.27	1.00e-58	219.00
IUUC-Oga-088264	Otolemur garnettii	34.62	2.00e-60	225.00
IUUC-Oar-089335	Ovis aries	35.10	3.00e-63	235.00
IUUC-Ptr-091320	Pan troglodytes	35.82	3.00e-61	228.00
IUUC-Pan-092833	Papio anubis	36.06	7.00e-61	227.00
IUUC-Psi-093504	Pelodiscus sinensis	33.41	2.00e-59	222.00
IUUC-Pma-094189	Petromyzon marinus	35.89	2.00e-63	235.00
IUUC-Pno-094929	Phaeosphaeria nodorum	29.50	1.00e-42	167.00
IUUC-Ppa-095429	Physcomitrella patens	51.83	9.00e-128	449.00
IUUC-Pfo-096337	Poecilia formosa	34.77	4.00e-67	248.00
IUUC-Pab-097571	Pongo abelii	35.58	5.00e-61	227.00
IUUC-Pca-100394	Procavia capensis	32.75	7.00e-52	197.00
IUUC-Ppe-101848	Prunus persica	71.49	0.00e+00	656.00
IUUC-Pva-102921	Pteropus vampyrus	34.38	1.00e-29	123.00
IUUC-Pgr-103637	Puccinia graminis	25.58	4.00e-30	125.00
IUUC-Ptt-103781	Puccinia triticina	25.99	7.00e-33	134.00
IUUC-Pte-104135	Pyrenophora teres	32.41	1.00e-44	174.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	31.57	7.00e-47	181.00
IUUC-Rno-105114	Rattus norvegicus	35.34	6.00e-63	234.00
IUUC-Sce-106401	Saccharomyces cerevisiae	30.00	2.00e-46	179.00
IUUC-Sha-107122	Sarcophilus harrisii	37.47	2.00e-66	245.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	27.44	7.00e-38	150.00
IUUC-Spo-108134	Schizosaccharomyces pombe	30.72	3.00e-40	159.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	27.63	2.00e-42	166.00
IUUC-Smo-108720	Selaginella moellendorffii	48.58	3.00e-117	414.00
IUUC-Sit-110354	Setaria italica	64.68	7.00e-168	582.00
IUUC-Sly-111023	Solanum lycopersicum	66.31	4.00e-173	600.00
IUUC-Stu-112778	Solanum tuberosum	72.27	7.00e-180	622.00
IUUC-Sar-113596	Sorex araneus	32.14	8.00e-45	174.00
IUUC-Sbi-114193	Sorghum bicolor	63.99	1.00e-158	552.00
IUUC-Sre-115002	Sporisorium reilianum	28.87	4.00e-17	82.40
IUUC-Ssc-116066	Sus scrofa	35.10	2.00e-62	232.00
IUUC-Tgu-117048	Taeniopygia guttata	36.16	1.00e-59	222.00
IUUC-Tsy-119573	Tarsius syrichta	22.81	7.00e-21	94.40
IUUC-Tni-119820	Tetraodon nigroviridis	35.82	2.00e-66	245.00
IUUC-Tca-121605	Theobroma cacao	75.86	0.00e+00	692.00
IUUC-Tre-121947	Trichoderma reesei	25.98	7.00e-34	137.00
IUUC-Tvi-122481	Trichoderma virens	26.39	7.00e-33	134.00
IUUC-Tae-123847	Triticum aestivum	65.98	1.00e-171	595.00
IUUC-Tur-126586	Triticum urartu	66.33	1.00e-156	545.00
IUUC-Tme-126900	Tuber melanosporum	31.79	5.00e-51	194.00
IUUC-Tbe-127736	Tupaia belangeri	29.94	3.00e-35	142.00
IUUC-Ttr-129041	Tursiops truncatus	30.53	6.00e-44	171.00
IUUC-Vpa-130260	Vicugna pacos	35.10	1.00e-62	233.00
IUUC-Vvi-131009	Vitis vinifera	75.06	0.00e+00	674.00
IUUC-Xtr-132083	Xenopus tropicalis	35.82	6.00e-65	240.00
IUUC-Xma-133094	Xiphophorus maculatus	35.17	1.00e-66	246.00
IUUC-Yli-134531	Yarrowia lipolytica	25.97	1.00e-31	130.00
IUUC-Zma-135509	Zea mays	65.59	1.00e-168	585.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence