iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSPSIG00000011986.1	ENSPSIT00000013793.1	ENSPSIP00000013729.1
ENSPSIG00000011986.1	ENSPSIT00000013802.1	ENSPSIP00000013738.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.90e-58	190.8	105	143
UBD/Beta-Prp	9.20e-129	428.9	725	943

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdD..gtikvWDlrtgvll 36
           Ht +v claf sd  +l+s + D  +t+ vWD+++g+ll
   Q: 105  HTHGVACLAFdSDgQRLASVGLDakNTVCVWDWKKGKLL 143
           9**********999*******9999**********9987 PP

UBD/Beta-Prp

   S: 7    ghhksvitcvkfspdksllatg..srdgtikvwdvttgkllrsl.sgheaevtavkfspdgkilvtgseD..rtikvwdlstgkcvhtl 90
           gh+++ ++ ++++p k+++atg  +rd+ i vwd++t k+l+ l  +h+ +v a++fs dgk+l++++ D  +ti  wd ++g+ + t 
   Q: 725  GHDDDILS-LTIHPMKDYVATGqiGRDAAIHVWDTQTLKCLSLLkGQHQRGVCALDFSADGKFLASVGLDdnHTIVFWDWKKGEKIATT 812
           45555555.999*********96669******************77899********************99999999************ PP
   S: 91   kghedsvlslsfspsg.dklvsGshdrtirvwdletgqclee....tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrt 174
           +gh+d++  ++ +p   dklv+ +  + i+ w+   g   ++     + g+ ++ ++v++   ++l++sG++ + + +W  k   ll+t
   Q: 813  RGHKDKIFVVKCNPHHvDKLVTVG-MKHIKFWQQAGGGFTSKrgtfGNIGKLETMMSVSYGRIEDLVFSGAATGDIYIW--KDILLLKT 898
           **************7769999887.999****98888888779987777888999999999999***************..8899**** PP
   S: 175  ltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnght 222
            +  h+++v  +   +  k +v+g++dg v lwd   ++c++t+   +
   Q: 899  VKA-HDGPVFAMHSLD--KGFVTGGKDGVVALWDDMFERCLKTYAIKR 943
           *98.********9888..67********************99997555 PP

Organism

Pelodiscus sinensis

Protein Sequence
(Fasta)

MADRTAPRCQ LRLEWVYGYR GHQCRNNLYY TAGKEVVYFV AGVGVIYNTR EHTQKFFLGH 60
NDDIISLAVH PDKTLVATGQ VGKDPYVCIW DSYSVLTVSV LKDAHTHGVA CLAFDSDGQR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

NNNNNNNNNN NGAGTGCCAG TCTCCTCCCC GCGCTGCTGG GCGAGCTGCT GCCGCCGCTA 60
GCCTCAGGGC TCCGGAGCAC ACGGACCAGG CTGCAGTGCA GGGAGGGGAG CTGCTGCCAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR024977--Apc4_WD40_dom
IPR005108--HELP
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40
PF03451--HELP
PF00400--WD40

SMART

SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001387	Ailuropoda melanoleuca	92.42	0.00e+00	3679.00
IUUC-Apl-003604	Anas platyrhynchos	94.71	0.00e+00	3731.00
IUUC-Aca-004572	Anolis carolinensis	91.02	0.00e+00	3653.00
IUUC-Ame-010713	Astyanax mexicanus	79.69	0.00e+00	3217.00
IUUC-Bta-012812	Bos taurus	92.27	0.00e+00	3675.00
IUUC-Cja-019191	Callithrix jacchus	91.82	0.00e+00	3629.00
IUUC-Cfa-020041	Canis familiaris	92.69	0.00e+00	3437.00
IUUC-Cre-022931	Chlamydomonas reinhardtii	35.42	4.00e-104	374.00
IUUC-Csa-023689	Chlorocebus sabaeus	92.39	0.00e+00	3578.00
IUUC-Cho-025038	Choloepus hoffmanni	91.91	0.00e+00	1413.00
IUUC-Cin-025205	Ciona intestinalis	62.02	0.00e+00	2559.00
IUUC-Csv-026014	Ciona savignyi	62.58	0.00e+00	2562.00
IUUC-Dno-029982	Dasypus novemcinctus	90.62	0.00e+00	3516.00
IUUC-Eca-034161	Equus caballus	91.58	0.00e+00	3531.00
IUUC-Fca-036307	Felis catus	92.78	0.00e+00	3685.00
IUUC-Fal-037332	Ficedula albicollis	92.79	0.00e+00	3633.00
IUUC-Gmo-039057	Gadus morhua	73.27	0.00e+00	2945.00
IUUC-Gac-042555	Gasterosteus aculeatus	79.05	0.00e+00	3199.00
IUUC-Ggo-045107	Gorilla gorilla	92.52	0.00e+00	3677.00
IUUC-Hsa-046482	Homo sapiens	92.57	0.00e+00	3679.00
IUUC-Itr-049023	Ictidomys tridecemlineatus	91.23	0.00e+00	3571.00
IUUC-Loc-052642	Lepisosteus oculatus	87.18	0.00e+00	3457.00
IUUC-Laf-053649	Loxodonta africana	90.55	0.00e+00	3573.00
IUUC-Mcc-055361	Macaca mulatta	92.23	0.00e+00	3212.00
IUUC-Meu-056618	Macropus eugenii	77.36	0.00e+00	1774.00
IUUC-Mga-059202	Meleagris gallopavo	94.75	0.00e+00	3634.00
IUUC-Mmr-060729	Microcebus murinus	90.97	0.00e+00	3673.00
IUUC-Mdo-062462	Monodelphis domestica	92.80	0.00e+00	3581.00
IUUC-Mmu-063865	Mus musculus	91.66	0.00e+00	3675.00
IUUC-Mpu-066724	Mustela putorius furo	92.98	0.00e+00	3696.00
IUUC-Mlu-067816	Myotis lucifugus	92.78	0.00e+00	3699.00
IUUC-Opr-070213	Ochotona princeps	89.47	0.00e+00	1922.00
IUUC-Ont-071928	Oreochromis niloticus	79.18	0.00e+00	3224.00
IUUC-Oan-073563	Ornithorhynchus anatinus	92.39	0.00e+00	3665.00
IUUC-Ocu-074531	Oryctolagus cuniculus	92.32	0.00e+00	3675.00
IUUC-Ola-086943	Oryzias latipes	77.48	0.00e+00	3086.00
IUUC-Olu-087860	Ostreococcus lucimarinus	39.01	4.00e-118	418.00
IUUC-Oga-088665	Otolemur garnettii	92.33	0.00e+00	3554.00
IUUC-Oar-090429	Ovis aries	92.47	0.00e+00	3684.00
IUUC-Ptr-091168	Pan troglodytes	88.71	0.00e+00	3108.00
IUUC-Pma-094424	Petromyzon marinus	71.01	2.00e-121	427.00
IUUC-Pfo-096150	Poecilia formosa	79.01	0.00e+00	3106.00
IUUC-Pab-098561	Pongo abelii	91.17	0.00e+00	3187.00
IUUC-Rno-105002	Rattus norvegicus	91.20	0.00e+00	3667.00
IUUC-Sha-107105	Sarcophilus harrisii	90.25	0.00e+00	3464.00
IUUC-Ssc-116282	Sus scrofa	92.70	0.00e+00	3583.00
IUUC-Tgu-116807	Taeniopygia guttata	93.59	0.00e+00	3677.00
IUUC-Tru-118040	Takifugu rubripes	77.86	0.00e+00	3134.00
IUUC-Tni-120118	Tetraodon nigroviridis	75.73	0.00e+00	3110.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence