iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Atr-002686

Ensembl Protein ID

ERN04207

UniProt Accession

W1P2Z3; W1P2Z3_AMBTC

Genbank Protein ID

ERN04207.1

Protein Name

Eukaryotic translation initiation factor 3 subunit F; eIF-3-epsilon

Genbank Nucleotide ID

KI394293

Gene Name

AMTR_s00077p00121720

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AMTR_s00077p00121720	ERN04207	ERN04207

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
DUB/JAMM	41.06	2.00e-48	190.00	IUUC-Hsa-046860

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Amborella trichopoda

Functional Description
(View)

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.

Protein Sequence
(Fasta)

MASGNTILQF SPSSTNLSAK IHPIVLFNIC DSFLRRQDQA ERVIGTLLGS ISADGTVDIR 60
NSYCVPHNES SDQVAVDIEY HHSMLVSHQR VNPKEVIVGW YSTGSGVSGG SALIHEFYSR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGAGTG GGAACACGAT TCTTCAATTC TCTCCTTCCA GTACCAATTT ATCGGCGAAG 60
ATTCATCCTA TTGTTCTTTT TAATATCTGT GATTCTTTTT TGAGGCGTCA AGACCAAGCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome

Interpro

IPR027531--eIF3f
IPR000555--JAMM/MPN+_dom
IPR024969--Rpn11/EIF3F_C

Pfam

PF01398--JAB
PF13012--MitMem_reg

SMART

SM00232--JAB_MPN

Gene Ontology

GO:0005829--C:cytosol
GO:0016282--C:eukaryotic 43S preinitiation complex
GO:0033290--C:eukaryotic 48S preinitiation complex
GO:0005852--C:eukaryotic translation initiation factor 3 complex
GO:0016020--C:membrane
GO:0005634--C:nucleus
GO:0003743--F:translation initiation factor activity
GO:0009793--P:embryo development ending in seed dormancy
GO:0001731--P:formation of translation preinitiation complex
GO:0009846--P:pollen germination
GO:0006446--P:regulation of translational initiation
GO:0009744--P:response to sucrose

KEGG

atr:18432360

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001150	Aegilops tauschii	63.70	2.00e-97	348.00
IUUC-Aml-001527	Ailuropoda melanoleuca	41.06	8.00e-53	199.00
IUUC-Apl-003977	Anas platyrhynchos	39.55	9.00e-41	158.00
IUUC-Aca-004335	Anolis carolinensis	41.51	1.00e-54	205.00
IUUC-Aly-005945	Arabidopsis lyrata	70.69	9.00e-106	375.00
IUUC-Ath-007045	Arabidopsis thaliana	70.24	3.00e-103	366.00
IUUC-Acl-008365	Aspergillus clavatus	38.87	2.00e-44	171.00
IUUC-Afl-008742	Aspergillus flavus	39.22	3.00e-44	171.00
IUUC-Afu-009030	Aspergillus fumigatus	38.52	4.00e-44	170.00
IUUC-Ani-009212	Aspergillus nidulans	38.28	1.00e-43	169.00
IUUC-Ang-009712	Aspergillus niger	39.31	7.00e-45	173.00
IUUC-Aor-009885	Aspergillus oryzae	39.22	6.00e-45	173.00
IUUC-Ate-010315	Aspergillus terreus	38.87	6.00e-43	166.00
IUUC-Ame-010801	Astyanax mexicanus	54.32	1.00e-21	95.90
IUUC-Bgr-011982	Blumeria graminis	34.02	1.00e-38	152.00
IUUC-Bta-012804	Bos taurus	41.06	6.00e-53	200.00
IUUC-Bci-013891	Botrytis cinerea	33.33	3.00e-30	124.00
IUUC-Bdi-014328	Brachypodium distachyon	66.79	2.00e-100	357.00
IUUC-Bol-015446	Brassica oleracea	70.99	3.00e-109	386.00
IUUC-Bra-016862	Brassica rapa	70.65	7.00e-109	385.00
IUUC-Cel-018171	Caenorhabditis elegans	30.07	1.00e-26	112.00
IUUC-Cja-019335	Callithrix jacchus	41.06	8.00e-53	199.00
IUUC-Cfa-020138	Canis familiaris	40.68	2.00e-52	197.00
IUUC-Cpo-022109	Cavia porcellus	39.26	1.00e-42	166.00
IUUC-Cre-022664	Chlamydomonas reinhardtii	45.00	3.00e-61	227.00
IUUC-Csa-023994	Chlorocebus sabaeus	41.06	8.00e-53	199.00
IUUC-Cho-024351	Choloepus hoffmanni	36.95	2.00e-31	129.00
IUUC-Cin-025801	Ciona intestinalis	43.94	3.00e-54	204.00
IUUC-Csv-025805	Ciona savignyi	44.70	2.00e-54	204.00
IUUC-Cgl-026643	Colletotrichum gloeosporioides	32.37	2.00e-30	125.00
IUUC-Cne-026868	Cryptococcus neoformans	34.84	2.00e-21	95.10
IUUC-Cme-027328	Cyanidioschyzon merolae	26.15	3.00e-17	81.30
IUUC-Dre-028085	Danio rerio	42.21	2.00e-53	201.00
IUUC-Dno-030099	Dasypus novemcinctus	41.06	1.00e-52	198.00
IUUC-Dor-030324	Dipodomys ordii	37.26	3.00e-42	164.00
IUUC-Dse-031314	Dothistroma septosporum	36.97	4.00e-40	157.00
IUUC-Dme-031926	Drosophila melanogaster	40.36	9.00e-52	195.00
IUUC-Ete-032569	Echinops telfairi	39.54	1.00e-48	184.00
IUUC-Eca-033502	Equus caballus	39.16	6.00e-47	180.00
IUUC-Eeu-034883	Erinaceus europaeus	34.71	9.00e-21	91.70
IUUC-Fca-035873	Felis catus	41.06	7.00e-53	199.00
IUUC-Fal-036921	Ficedula albicollis	41.44	9.00e-54	202.00
IUUC-Fox-037765	Fusarium oxysporum	30.96	1.00e-23	102.00
IUUC-Fso-038240	Fusarium solani	31.32	2.00e-24	105.00
IUUC-Gmo-038864	Gadus morhua	42.49	2.00e-55	207.00
IUUC-Ggr-039862	Gaeumannomyces graminis	32.07	2.00e-27	114.00
IUUC-Gga-040952	Gallus gallus	41.44	1.00e-53	202.00
IUUC-Gac-041677	Gasterosteus aculeatus	44.15	9.00e-58	215.00
IUUC-Gma-043061	Glycine max	72.47	6.00e-102	362.00
IUUC-Ggo-045591	Gorilla gorilla	41.06	7.00e-53	199.00
IUUC-Hsa-046860	Homo sapiens	41.06	8.00e-53	199.00
IUUC-Hvu-047410	Hordeum vulgare	68.92	1.00e-56	210.00
IUUC-Itr-048211	Ictidomys tridecemlineatus	41.44	3.00e-53	201.00
IUUC-Lch-049410	Latimeria chalumnae	41.38	5.00e-36	142.00
IUUC-Lpe-051102	Leersia perrieri	74.42	3.00e-105	373.00
IUUC-Loc-052016	Lepisosteus oculatus	40.91	9.00e-44	169.00
IUUC-Lma-053157	Leptosphaeria maculans	36.40	6.00e-40	156.00
IUUC-Laf-054568	Loxodonta africana	41.06	1.00e-52	198.00
IUUC-Mcc-054613	Macaca mulatta	41.06	8.00e-53	199.00
IUUC-Mor-057104	Magnaporthe oryzae	31.72	2.00e-27	115.00
IUUC-Mtr-058445	Medicago truncatula	73.26	2.00e-113	400.00
IUUC-Mla-059038	Melampsora laricipopulina	31.71	3.00e-27	114.00
IUUC-Mga-059548	Meleagris gallopavo	39.65	3.00e-43	166.00
IUUC-Mvi-060520	Microbotryum violaceum	29.66	6.00e-18	83.60
IUUC-Mdo-062376	Monodelphis domestica	40.68	1.00e-52	199.00
IUUC-Mmu-063254	Mus musculus	41.44	2.00e-53	201.00
IUUC-Mac-065635	Musa acuminata	68.94	2.00e-100	357.00
IUUC-Mpu-066314	Mustela putorius furo	41.06	7.00e-53	199.00
IUUC-Mlu-067512	Myotis lucifugus	41.06	4.00e-53	200.00
IUUC-Nfi-068262	Neosartorya fischeri	38.52	4.00e-44	170.00
IUUC-Ncr-068872	Neurospora crassa	31.72	1.00e-29	122.00
IUUC-Nle-070118	Nomascus leucogenys	41.06	7.00e-53	199.00
IUUC-Opr-071228	Ochotona princeps	40.09	2.00e-43	167.00
IUUC-Ont-072600	Oreochromis niloticus	43.35	1.00e-57	214.00
IUUC-Oan-073584	Ornithorhynchus anatinus	39.21	2.00e-43	167.00
IUUC-Ocu-074542	Oryctolagus cuniculus	41.06	3.00e-53	201.00
IUUC-Oba-075923	Oryza barthii	70.42	9.00e-109	385.00
IUUC-Obr-076313	Oryza brachyantha	74.81	3.00e-104	370.00
IUUC-Ogl-076932	Oryza glaberrima	70.42	9.00e-109	385.00
IUUC-Ogu-078152	Oryza glumaepatula	70.42	9.00e-109	385.00
IUUC-Oin-079528	Oryza indica	70.42	9.00e-109	385.00
IUUC-Olo-080401	Oryza longistaminata	70.42	9.00e-109	385.00
IUUC-Ome-081553	Oryza meridionalis	70.07	2.00e-108	383.00
IUUC-Oni-082090	Oryza nivara	70.42	4.00e-109	386.00
IUUC-Opu-083583	Oryza punctata	75.19	5.00e-105	372.00
IUUC-Oru-084492	Oryza rufipogon	70.42	9.00e-109	385.00
IUUC-Osa-085383	Oryza sativa	70.42	9.00e-109	385.00
IUUC-Ola-086835	Oryzias latipes	42.59	2.00e-56	211.00
IUUC-Olu-087716	Ostreococcus lucimarinus	37.83	3.00e-39	153.00
IUUC-Oga-088886	Otolemur garnettii	41.44	1.00e-53	202.00
IUUC-Oar-090079	Ovis aries	41.06	5.00e-53	199.00
IUUC-Ptr-091457	Pan troglodytes	41.06	8.00e-53	199.00
IUUC-Pan-092317	Papio anubis	38.24	1.00e-27	115.00
IUUC-Psi-093129	Pelodiscus sinensis	39.75	3.00e-44	170.00
IUUC-Pma-094488	Petromyzon marinus	40.68	3.00e-54	203.00
IUUC-Pno-095049	Phaeosphaeria nodorum	36.40	3.00e-41	160.00
IUUC-Ppa-095341	Physcomitrella patens	68.31	1.00e-105	374.00
IUUC-Pfo-096286	Poecilia formosa	42.03	8.00e-57	212.00
IUUC-Pab-097765	Pongo abelii	41.06	8.00e-53	199.00
IUUC-Pop-099131	Populus trichocarpa	75.36	3.00e-110	390.00
IUUC-Pca-100524	Procavia capensis	33.48	2.00e-27	114.00
IUUC-Ppe-101934	Prunus persica	75.44	9.00e-115	404.00
IUUC-Pva-102577	Pteropus vampyrus	41.44	2.00e-53	201.00
IUUC-Pgr-103521	Puccinia graminis	32.30	3.00e-30	124.00
IUUC-Pte-104304	Pyrenophora teres	36.77	4.00e-42	164.00
IUUC-Pyt-104563	Pyrenophora triticirepentis	37.11	3.00e-42	164.00
IUUC-Rno-105717	Rattus norvegicus	41.44	1.00e-53	202.00
IUUC-Sha-107190	Sarcophilus harrisii	40.54	3.00e-50	191.00
IUUC-Sja-107918	Schizosaccharomyces japonicus	35.14	9.00e-36	142.00
IUUC-Spo-108355	Schizosaccharomyces pombe	37.98	9.00e-39	152.00
IUUC-Smo-109374	Selaginella moellendorffii	72.22	5.00e-108	382.00
IUUC-Sit-110119	Setaria italica	72.08	4.00e-106	375.00
IUUC-Sly-111570	Solanum lycopersicum	73.85	2.00e-105	374.00
IUUC-Stu-112308	Solanum tuberosum	75.62	3.00e-116	410.00
IUUC-Sar-113515	Sorex araneus	42.17	2.00e-15	74.30
IUUC-Sbi-114605	Sorghum bicolor	72.08	2.00e-105	374.00
IUUC-Sre-114906	Sporisorium reilianum	38.08	3.00e-40	157.00
IUUC-Tgu-117087	Taeniopygia guttata	40.00	2.00e-43	167.00
IUUC-Tru-117700	Takifugu rubripes	44.11	7.00e-59	219.00
IUUC-Tni-120470	Tetraodon nigroviridis	43.35	8.00e-57	212.00
IUUC-Tca-121109	Theobroma cacao	77.82	2.00e-111	394.00
IUUC-Tre-122095	Trichoderma reesei	30.60	4.00e-24	104.00
IUUC-Tvi-122580	Trichoderma virens	30.60	2.00e-23	102.00
IUUC-Tae-125129	Triticum aestivum	70.30	7.00e-104	369.00
IUUC-Tur-126658	Triticum urartu	61.40	3.00e-93	333.00
IUUC-Tme-127043	Tuber melanosporum	38.08	2.00e-41	161.00
IUUC-Tbe-127927	Tupaia belangeri	41.06	7.00e-53	199.00
IUUC-Ttr-129231	Tursiops truncatus	41.06	5.00e-53	200.00
IUUC-Uma-129578	Ustilago maydis	36.82	9.00e-38	149.00
IUUC-Vda-129730	Verticillium dahliae	32.50	4.00e-30	124.00
IUUC-Vvi-130968	Vitis vinifera	77.66	4.00e-118	416.00
IUUC-Xtr-132203	Xenopus tropicalis	40.30	2.00e-51	194.00
IUUC-Xma-133972	Xiphophorus maculatus	42.59	8.00e-56	209.00
IUUC-Yli-134553	Yarrowia lipolytica	33.83	3.00e-29	120.00
IUUC-Zma-134941	Zea mays	70.57	3.00e-97	346.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence