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Tag Content
iUUCD ID IUUC-Oin-079358
Ensembl Protein ID BGIOSGA024344-PA
UniProt Accession Q7GBC8; URM1_ORYSI
Genbank Protein ID BAC01162.1
Protein Name Ubiquitin-related modifier 1 homolog
Genbank Nucleotide ID AB086905; CT846846
Gene Name URM1
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
BGIOSGA024344 BGIOSGA024344-TA BGIOSGA024344-PA
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
ULD/UDP/UBQ/UBQ_Other 40.96 2.00e-11 63.90 IUUC-Sce-106366
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Oryza indica
Functional Description
(View)

Functional Description


     Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by being thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. Also acts as a ubiquitin-like protein (UBL) that is covalently conjugated via an isopeptide bond to lysine residues of target proteins. The thiocarboxylated form serves as substrate for conjugation and oxidative stress specifically induces the formation of UBL-protein conjugates.
 Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by being thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. Also acts as a ubiquitin-like protein (UBL) that is covalently conjugated via an isopeptide bond to lysine residues of target proteins. The thiocarboxylated form serves as substrate for conjugation and oxidative stress specifically induces the formation of UBL-protein conjugates.
Protein Sequence
(Fasta)
MNDGELWKDG SEGNLSGSLL RVLPLTSPPP DTTEKTQERP QPIALVSSPP RAEPIIPHRR 60
RRRLLALAAA RDSPLLGRSH PRRVDARSLF ALRLLPILSA MHLTLEFGGG LELLLEKSTK 120
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Protein Fasta Sequence


>IUUC-Oin-079358|ULD,UBQ_Other|Oryza indica
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Nucleotide Sequence
(Fasta)
ATGAATGACG GGGAGCTTTG GAAGGATGGC AGCGAGGGCA ACTTGAGCGG GAGCTTATTG 60
CGCGTGCTGC CTTTGACTTC CCCTCCTCCT GACACGACGG AGAGTGCGCG ATGGTGCTCG 120
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Nucleotide Fasta Sequence


>IUUC-Oin-079358|ULD,UBQ_Other|Oryza indica
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Sequence Source Ensembl
Keyword

KW-0963--Cytoplasm
KW-1017--Isopeptide bond
KW-0819--tRNA processing
KW-0833--Ubl conjugation pathway
Interpro

IPR012675--Beta-grasp_dom
IPR016155--Mopterin_synth/thiamin_S_b
IPR015221--Urm1
Pfam

PF09138--Urm1
Gene Ontology

GO:0005737--C:cytoplasm
GO:0034227--P:tRNA thio-modification
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-002254 Ailuropoda melanoleuca 53.85 2.00e-26 109.00
IUUC-Atr-003089 Amborella trichopoda 68.00 2.00e-37 145.00
IUUC-Apl-003382 Anas platyrhynchos 57.29 3.00e-25 105.00
IUUC-Aca-004981 Anolis carolinensis 60.00 3.00e-27 112.00
IUUC-Aly-005517 Arabidopsis lyrata 68.82 3.00e-32 128.00
IUUC-Ath-006718 Arabidopsis thaliana 67.47 1.00e-30 123.00
IUUC-Ago-007917 Ashbya gossypii 40.20 2.00e-17 79.30
IUUC-Acl-008054 Aspergillus clavatus 58.00 9.00e-13 63.90
IUUC-Afl-008704 Aspergillus flavus 46.07 2.00e-15 72.40
IUUC-Aor-009890 Aspergillus oryzae 47.57 2.00e-19 86.30
IUUC-Bta-012448 Bos taurus 53.85 2.00e-26 109.00
IUUC-Bci-013865 Botrytis cinerea 42.45 3.00e-17 79.00
IUUC-Bdi-014980 Brachypodium distachyon 87.36 1.00e-38 150.00
IUUC-Bol-016055 Brassica oleracea 65.06 2.00e-29 119.00
IUUC-Bra-016845 Brassica rapa 65.06 2.00e-29 119.00
IUUC-Cel-018485 Caenorhabditis elegans 36.45 2.00e-11 59.70
IUUC-Cja-019587 Callithrix jacchus 54.81 1.00e-26 110.00
IUUC-Cfa-020653 Canis familiaris 52.88 2.00e-26 108.00
IUUC-Cpo-021622 Cavia porcellus 54.81 1.00e-26 110.00
IUUC-Cre-023015 Chlamydomonas reinhardtii 52.04 2.00e-25 106.00
IUUC-Csa-023756 Chlorocebus sabaeus 50.59 6.00e-18 82.40
IUUC-Cgl-026518 Colletotrichum gloeosporioides 39.22 2.00e-14 70.10
IUUC-Cne-026953 Cryptococcus neoformans 50.00 6.00e-22 95.50
IUUC-Cme-027314 Cyanidioschyzon merolae 45.45 1.00e-18 83.20
IUUC-Dre-027884 Danio rerio 62.00 2.00e-28 115.00
IUUC-Dno-029262 Dasypus novemcinctus 51.22 9.00e-18 82.00
IUUC-Dor-030601 Dipodomys ordii 60.94 6.00e-17 77.80
IUUC-Dme-031893 Drosophila melanogaster 53.00 3.00e-24 102.00
IUUC-Ete-032773 Echinops telfairi 53.47 1.00e-25 106.00
IUUC-Eca-034187 Equus caballus 53.85 2.00e-26 109.00
IUUC-Eeu-034808 Erinaceus europaeus 51.92 1.00e-25 107.00
IUUC-Fca-036107 Felis catus 52.88 4.00e-26 108.00
IUUC-Fal-036607 Ficedula albicollis 56.25 2.00e-24 102.00
IUUC-Fox-037698 Fusarium oxysporum 39.22 2.00e-15 73.60
IUUC-Gmo-039492 Gadus morhua 61.22 2.00e-26 109.00
IUUC-Ggr-039965 Gaeumannomyces graminis 37.00 2.00e-13 67.00
IUUC-Gga-041268 Gallus gallus 58.00 5.00e-27 111.00
IUUC-Gac-042111 Gasterosteus aculeatus 57.84 4.00e-27 111.00
IUUC-Gma-043240 Glycine max 68.67 2.00e-32 129.00
IUUC-Ggo-045176 Gorilla gorilla 50.59 6.00e-12 62.40
IUUC-Hsa-046077 Homo sapiens 54.81 3.00e-20 89.00
IUUC-Itr-048111 Ictidomys tridecemlineatus 74.00 2.00e-18 82.40
IUUC-Kpa-049157 Komagataella pastoris 41.00 3.00e-14 68.90
IUUC-Lch-049889 Latimeria chalumnae 54.90 4.00e-25 105.00
IUUC-Lpe-050783 Leersia perrieri 90.36 5.00e-40 154.00
IUUC-Loc-052400 Lepisosteus oculatus 60.20 1.00e-26 110.00
IUUC-Lma-053259 Leptosphaeria maculans 41.00 1.00e-14 70.50
IUUC-Laf-053596 Loxodonta africana 53.77 4.00e-25 105.00
IUUC-Mcc-054845 Macaca mulatta 55.79 7.00e-24 100.00
IUUC-Meu-055968 Macropus eugenii 52.88 6.00e-26 107.00
IUUC-Mor-057126 Magnaporthe oryzae 34.31 4.00e-13 66.20
IUUC-Mpo-057311 Magnaporthe poae 36.89 4.00e-14 69.30
IUUC-Mtr-058266 Medicago truncatula 68.24 7.00e-31 124.00
IUUC-Mla-058847 Melampsora laricipopulina 37.27 8.00e-09 51.60
IUUC-Mga-059468 Meleagris gallopavo 57.29 5.00e-25 104.00
IUUC-Mvi-060235 Microbotryum violaceum 67.35 2.00e-14 71.20
IUUC-Mdo-061948 Monodelphis domestica 55.00 1.00e-26 110.00
IUUC-Mmu-063946 Mus musculus 54.90 4.00e-26 108.00
IUUC-Mac-064812 Musa acuminata 77.38 2.00e-35 139.00
IUUC-Mpu-066763 Mustela putorius furo 55.00 2.00e-26 109.00
IUUC-Mlu-066970 Myotis lucifugus 51.81 4.00e-18 81.60
IUUC-Ncr-068824 Neurospora crassa 40.20 1.00e-14 70.90
IUUC-Nle-069849 Nomascus leucogenys 50.59 4.00e-18 82.80
IUUC-Opr-070227 Ochotona princeps 54.81 1.00e-26 110.00
IUUC-Ont-072530 Oreochromis niloticus 56.60 3.00e-27 112.00
IUUC-Oan-073191 Ornithorhynchus anatinus 55.21 1.00e-23 100.00
IUUC-Ocu-074460 Oryctolagus cuniculus 52.88 5.00e-26 108.00
IUUC-Oba-075499 Oryza barthii 100.00 6.00e-61 225.00
IUUC-Obr-076896 Oryza brachyantha 91.67 4.00e-42 163.00
IUUC-Ogl-077834 Oryza glaberrima 100.00 2.00e-45 172.00
IUUC-Ogu-078622 Oryza glumaepatula 100.00 2.00e-45 172.00
IUUC-Olo-081035 Oryza longistaminata 95.83 2.00e-49 187.00
IUUC-Oni-082425 Oryza nivara 100.00 2.00e-45 172.00
IUUC-Opu-083461 Oryza punctata 97.62 6.00e-44 168.00
IUUC-Oru-084875 Oryza rufipogon 90.14 1.00e-31 126.00
IUUC-Oga-089128 Otolemur garnettii 53.85 1.00e-26 110.00
IUUC-Oar-089896 Ovis aries 53.85 2.00e-26 109.00
IUUC-Ptr-091618 Pan troglodytes 50.59 6.00e-12 62.40
IUUC-Pan-092238 Papio anubis 50.59 6.00e-18 82.40
IUUC-Psi-093879 Pelodiscus sinensis 57.69 1.00e-27 113.00
IUUC-Pma-094484 Petromyzon marinus 59.26 1.00e-23 100.00
IUUC-Ppa-095801 Physcomitrella patens 65.06 4.00e-27 111.00
IUUC-Pfo-097192 Poecilia formosa 58.00 5.00e-26 108.00
IUUC-Pab-098203 Pongo abelii 54.81 3.00e-20 89.00
IUUC-Pop-099614 Populus trichocarpa 73.49 3.00e-32 128.00
IUUC-Pca-100507 Procavia capensis 51.85 6.00e-18 80.90
IUUC-Ppe-101174 Prunus persica 69.00 7.00e-37 144.00
IUUC-Pva-102735 Pteropus vampyrus 52.88 6.00e-24 101.00
IUUC-Pgr-103510 Puccinia graminis 37.74 3.00e-08 50.10
IUUC-Ptt-103918 Puccinia triticina 37.38 1.00e-10 57.40
IUUC-Pte-104173 Pyrenophora teres 40.00 3.00e-16 75.90
IUUC-Pyt-104806 Pyrenophora triticirepentis 40.00 3.00e-16 75.90
IUUC-Rno-105820 Rattus norvegicus 56.00 2.00e-26 109.00
IUUC-Sce-106366 Saccharomyces cerevisiae 39.22 5.00e-15 71.60
IUUC-Sja-107727 Schizosaccharomyces japonicus 38.38 4.00e-13 65.50
IUUC-Spo-108074 Schizosaccharomyces pombe 41.75 1.00e-08 50.40
IUUC-Smo-108944 Selaginella moellendorffii 61.96 4.00e-26 107.00
IUUC-Sit-110277 Setaria italica 89.16 2.00e-39 152.00
IUUC-Sly-111505 Solanum lycopersicum 67.47 2.00e-30 123.00
IUUC-Stu-112076 Solanum tuberosum 67.47 2.00e-30 122.00
IUUC-Sbi-114274 Sorghum bicolor 74.47 1.00e-35 140.00
IUUC-Sre-114953 Sporisorium reilianum 51.46 1.00e-21 93.60
IUUC-Ssc-115418 Sus scrofa 56.00 7.00e-27 110.00
IUUC-Tgu-117311 Taeniopygia guttata 57.29 2.00e-24 102.00
IUUC-Tru-118598 Takifugu rubripes 56.25 1.00e-23 99.80
IUUC-Tni-120109 Tetraodon nigroviridis 57.73 5.00e-24 101.00
IUUC-Tca-120942 Theobroma cacao 69.88 1.00e-30 123.00
IUUC-Tre-122099 Trichoderma reesei 43.62 8.00e-12 60.80
IUUC-Tvi-122285 Trichoderma virens 44.34 2.00e-14 69.70
IUUC-Tae-125193 Triticum aestivum 86.90 5.00e-40 154.00
IUUC-Tur-126677 Triticum urartu 77.08 8.00e-38 147.00
IUUC-Tme-127120 Tuber melanosporum 41.58 3.00e-15 73.20
IUUC-Tbe-128050 Tupaia belangeri 71.05 5.00e-12 61.60
IUUC-Ttr-129019 Tursiops truncatus 54.00 4.00e-26 108.00
IUUC-Uma-129483 Ustilago maydis 49.51 3.00e-20 89.00
IUUC-Vda-129690 Verticillium dahliae 32.14 2.00e-09 53.10
IUUC-Vvi-131174 Vitis vinifera 72.29 5.00e-33 131.00
IUUC-Xma-133862 Xiphophorus maculatus 58.00 5.00e-26 108.00
IUUC-Yli-134398 Yarrowia lipolytica 41.00 1.00e-14 70.50
IUUC-Zma-134964 Zea mays 86.90 7.00e-38 147.00
Created Date 25-Jun-2017

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