iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC	RAID2
Post-translational Modifications (PTMs)
CPLM
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.70e-16	59.4	85	122

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf....sdtllvsGsdDgtikvWDlrtgvl 35
           gH++ v ++++    + ++++s+s D ++++W++ +g l
   Q: 85   GHQGNVLDIKWnpfiD-NIIASCSEDTSVRIWEIPEGGL 122
           8**********98854.9***************887765 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MTVTKMSWRP QYRSSKFRNV YGKVANREHC FDGIPITKNV HDNHFCAVNA RFLAIVTESA 60
GGGSFLVIPL EQTGRIEPNY PKVCGHQGNV LDIKWNPFID NIIASCSEDT SVRIWEIPEG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCGCGCCCAG CCCCGCCGCC CGCTTTCTGC ATGACTGTCA CAAAGGTAAG CAGCTCAGAT 60
CGTCGCCACG CTGGGGACCC ACGGATGCTG TAGCCCCCGG GGCAGGGACT GAGGGGCGCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR027339--CORO2B
IPR015505--Coronin
IPR015048--DUF1899
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08953--DUF1899
PF00400--WD40

SMART

SM01166--DUF1899
SM00320--WD40

Gene Ontology

GO:0015629--C:actin cytoskeleton
GO:0016020--C:membrane
GO:0051015--F:actin filament binding
GO:0030036--P:actin cytoskeleton organization

KEGG

rno:300768

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002018	Ailuropoda melanoleuca	90.02	0.00e+00	922.00
IUUC-Apl-003786	Anas platyrhynchos	87.30	0.00e+00	922.00
IUUC-Aca-004750	Anolis carolinensis	91.65	0.00e+00	941.00
IUUC-Ame-011201	Astyanax mexicanus	73.46	0.00e+00	756.00
IUUC-Bta-012392	Bos taurus	95.94	0.00e+00	895.00
IUUC-Cja-019618	Callithrix jacchus	98.28	0.00e+00	838.00
IUUC-Cfa-020090	Canis familiaris	98.32	0.00e+00	980.00
IUUC-Cpo-021875	Cavia porcellus	97.70	0.00e+00	979.00
IUUC-Csa-023813	Chlorocebus sabaeus	98.33	0.00e+00	990.00
IUUC-Dre-028472	Danio rerio	87.10	0.00e+00	871.00
IUUC-Dno-029558	Dasypus novemcinctus	97.08	0.00e+00	979.00
IUUC-Dor-031144	Dipodomys ordii	97.26	0.00e+00	936.00
IUUC-Ete-032835	Echinops telfairi	87.50	0.00e+00	788.00
IUUC-Eca-033620	Equus caballus	98.11	0.00e+00	978.00
IUUC-Fca-035729	Felis catus	97.48	0.00e+00	979.00
IUUC-Fal-037197	Ficedula albicollis	92.83	0.00e+00	941.00
IUUC-Gmo-039540	Gadus morhua	85.68	0.00e+00	852.00
IUUC-Gga-040455	Gallus gallus	94.73	0.00e+00	952.00
IUUC-Gac-042218	Gasterosteus aculeatus	84.42	0.00e+00	872.00
IUUC-Ggo-044922	Gorilla gorilla	97.90	0.00e+00	981.00
IUUC-Hsa-045750	Homo sapiens	98.33	0.00e+00	989.00
IUUC-Itr-048866	Ictidomys tridecemlineatus	98.95	0.00e+00	984.00
IUUC-Lch-049567	Latimeria chalumnae	81.40	0.00e+00	882.00
IUUC-Loc-052145	Lepisosteus oculatus	92.01	0.00e+00	861.00
IUUC-Laf-054013	Loxodonta africana	97.05	0.00e+00	968.00
IUUC-Mcc-055230	Macaca mulatta	94.53	0.00e+00	968.00
IUUC-Meu-056208	Macropus eugenii	84.62	5.00e-154	537.00
IUUC-Mga-059825	Meleagris gallopavo	88.47	0.00e+00	922.00
IUUC-Mmr-060944	Microcebus murinus	97.49	0.00e+00	980.00
IUUC-Mdo-061845	Monodelphis domestica	89.22	0.00e+00	922.00
IUUC-Mmu-064197	Mus musculus	99.38	0.00e+00	995.00
IUUC-Mpu-065993	Mustela putorius furo	97.08	0.00e+00	976.00
IUUC-Mlu-067427	Myotis lucifugus	89.22	0.00e+00	872.00
IUUC-Nle-069666	Nomascus leucogenys	97.12	0.00e+00	841.00
IUUC-Opr-070358	Ochotona princeps	97.47	0.00e+00	973.00
IUUC-Ont-072071	Oreochromis niloticus	85.45	0.00e+00	859.00
IUUC-Oan-073064	Ornithorhynchus anatinus	90.49	0.00e+00	922.00
IUUC-Ocu-074888	Oryctolagus cuniculus	97.07	0.00e+00	834.00
IUUC-Ola-086733	Oryzias latipes	78.14	0.00e+00	857.00
IUUC-Oga-088842	Otolemur garnettii	98.11	0.00e+00	979.00
IUUC-Oar-089753	Ovis aries	98.12	0.00e+00	987.00
IUUC-Ptr-090933	Pan troglodytes	98.12	0.00e+00	983.00
IUUC-Pan-092127	Papio anubis	98.04	0.00e+00	839.00
IUUC-Psi-092947	Pelodiscus sinensis	94.51	0.00e+00	951.00
IUUC-Pma-094375	Petromyzon marinus	73.68	2.00e-135	474.00
IUUC-Pfo-096261	Poecilia formosa	84.18	0.00e+00	740.00
IUUC-Pab-098546	Pongo abelii	98.63	0.00e+00	906.00
IUUC-Pca-100133	Procavia capensis	97.92	5.00e-172	597.00
IUUC-Pva-102257	Pteropus vampyrus	97.55	0.00e+00	837.00
IUUC-Sha-106730	Sarcophilus harrisii	96.87	0.00e+00	976.00
IUUC-Ssc-115774	Sus scrofa	93.96	0.00e+00	965.00
IUUC-Tru-117702	Takifugu rubripes	75.38	0.00e+00	827.00
IUUC-Tni-120573	Tetraodon nigroviridis	77.30	0.00e+00	843.00
IUUC-Tbe-127746	Tupaia belangeri	87.56	0.00e+00	681.00
IUUC-Ttr-128935	Tursiops truncatus	98.15	0.00e+00	886.00
IUUC-Xtr-132098	Xenopus tropicalis	85.18	0.00e+00	878.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence