iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007063

Ensembl Protein ID

AT5G54200.1

UniProt Accession

Q9FK21; Q9FK21_ARATH

Genbank Protein ID

AED96466.1; BAB11582.1

Protein Name

Similarity to WD-containing protein; Transducin/WD40 repeat-like superfamily protein

Genbank Nucleotide ID

CP002688; AB013387

Gene Name

At5g54200; K18G13.8; K18G13_8

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G54200	AT5G54200.1	AT5G54200.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.10e-27	94.9	507	541

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sdtllvsGsdDgtikvWDlrtg 33
           H+d vtc++f   +d++++sGs D ++++W++ ++
   Q: 507  HSDYVTCIQFnpvDDNYFISGSLDAKVRIWSIPDH 541
           9***********766***************98765 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MMKMMMMNRR RSNVVRFEAK KEDKVEEEDN NDDCFYESLD RVLSSCSCST SNSDYDSDPN 60
VSDSIHDPTP FPVPMFTSGF ELWKSEPESV SERRIRLLRG LGLSNEPDLP PASQLRSRSR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCTCCTTCCT CTCTCTGGAG TCTGGACATT AAACACTAAA ACAGTTTATT TCTATTTTTC 60
TCTTTCCTCT CTCCATTAAT CTCCGATCTG ACTCCTCTCT TACTCAACCT CCATTGGCGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

KEGG

ath:AT5G54200

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000228	Aegilops tauschii	49.16	2.00e-157	548.00
IUUC-Aml-001198	Ailuropoda melanoleuca	33.20	9.00e-62	231.00
IUUC-Atr-002683	Amborella trichopoda	57.41	1.00e-150	526.00
IUUC-Apl-003781	Anas platyrhynchos	31.07	6.00e-62	231.00
IUUC-Aca-005216	Anolis carolinensis	30.95	1.00e-61	231.00
IUUC-Aly-005741	Arabidopsis lyrata	95.86	0.00e+00	1407.00
IUUC-Bta-012991	Bos taurus	33.13	8.00e-62	231.00
IUUC-Bdi-014809	Brachypodium distachyon	49.03	5.00e-172	597.00
IUUC-Bol-015849	Brassica oleracea	85.71	0.00e+00	1158.00
IUUC-Bra-017269	Brassica rapa	84.62	0.00e+00	1187.00
IUUC-Cja-019169	Callithrix jacchus	32.93	3.00e-60	226.00
IUUC-Cfa-020909	Canis familiaris	32.76	7.00e-62	231.00
IUUC-Csa-023121	Chlorocebus sabaeus	32.76	1.00e-61	230.00
IUUC-Dno-028930	Dasypus novemcinctus	28.66	5.00e-27	115.00
IUUC-Eca-033319	Equus caballus	32.57	7.00e-62	231.00
IUUC-Fca-036159	Felis catus	32.79	7.00e-56	211.00
IUUC-Gga-040349	Gallus gallus	31.51	6.00e-62	231.00
IUUC-Gac-041620	Gasterosteus aculeatus	30.09	1.00e-59	224.00
IUUC-Ggo-044646	Gorilla gorilla	32.76	1.00e-61	231.00
IUUC-Hsa-046353	Homo sapiens	32.76	9.00e-62	231.00
IUUC-Hvu-047755	Hordeum vulgare	50.76	5.00e-164	570.00
IUUC-Itr-048620	Ictidomys tridecemlineatus	33.33	6.00e-62	231.00
IUUC-Lpe-050824	Leersia perrieri	51.62	0.00e+00	672.00
IUUC-Loc-052691	Lepisosteus oculatus	31.49	3.00e-60	226.00
IUUC-Laf-054066	Loxodonta africana	32.76	5.00e-62	232.00
IUUC-Mcc-055055	Macaca mulatta	32.76	8.00e-62	231.00
IUUC-Mtr-058330	Medicago truncatula	60.98	0.00e+00	793.00
IUUC-Mla-059075	Melampsora laricipopulina	33.62	4.00e-31	129.00
IUUC-Mga-059659	Meleagris gallopavo	32.80	7.00e-60	224.00
IUUC-Mmr-060832	Microcebus murinus	32.93	1.00e-61	231.00
IUUC-Mdo-062300	Monodelphis domestica	32.76	8.00e-64	238.00
IUUC-Mmu-064277	Mus musculus	32.38	2.00e-61	230.00
IUUC-Mac-064884	Musa acuminata	56.46	0.00e+00	640.00
IUUC-Mpu-065914	Mustela putorius furo	33.13	7.00e-62	231.00
IUUC-Mlu-067853	Myotis lucifugus	32.57	5.00e-62	232.00
IUUC-Nle-069802	Nomascus leucogenys	32.76	1.00e-61	231.00
IUUC-Ont-072128	Oreochromis niloticus	31.47	1.00e-59	224.00
IUUC-Ocu-074311	Oryctolagus cuniculus	32.76	2.00e-62	233.00
IUUC-Oba-075039	Oryza barthii	51.80	1.00e-162	566.00
IUUC-Obr-076635	Oryza brachyantha	50.77	0.00e+00	654.00
IUUC-Ogl-077572	Oryza glaberrima	51.43	1.00e-162	566.00
IUUC-Ogu-078005	Oryza glumaepatula	50.19	0.00e+00	656.00
IUUC-Oin-079138	Oryza indica	49.68	0.00e+00	656.00
IUUC-Olo-080846	Oryza longistaminata	48.27	1.00e-142	499.00
IUUC-Ome-081525	Oryza meridionalis	51.43	1.00e-162	566.00
IUUC-Oni-082452	Oryza nivara	51.69	0.00e+00	694.00
IUUC-Opu-084083	Oryza punctata	48.28	0.00e+00	639.00
IUUC-Oru-085211	Oryza rufipogon	50.39	0.00e+00	655.00
IUUC-Osa-086029	Oryza sativa	51.43	3.00e-162	565.00
IUUC-Ola-086963	Oryzias latipes	31.30	1.00e-52	201.00
IUUC-Oga-088623	Otolemur garnettii	33.13	2.00e-61	230.00
IUUC-Oar-090357	Ovis aries	33.13	2.00e-61	230.00
IUUC-Pan-092290	Papio anubis	33.33	9.00e-62	231.00
IUUC-Pma-094528	Petromyzon marinus	30.99	5.00e-46	178.00
IUUC-Pfo-097366	Poecilia formosa	30.36	3.00e-59	223.00
IUUC-Pab-098364	Pongo abelii	32.76	9.00e-62	231.00
IUUC-Pop-099492	Populus trichocarpa	74.50	9.00e-179	619.00
IUUC-Pca-100159	Procavia capensis	26.87	2.00e-39	157.00
IUUC-Rno-105467	Rattus norvegicus	32.38	1.00e-61	231.00
IUUC-Sha-106778	Sarcophilus harrisii	32.93	7.00e-62	231.00
IUUC-Sja-107954	Schizosaccharomyces japonicus	38.35	1.00e-56	214.00
IUUC-Spo-108181	Schizosaccharomyces pombe	39.12	5.00e-55	209.00
IUUC-Sit-110585	Setaria italica	49.25	2.00e-179	622.00
IUUC-Sbi-114330	Sorghum bicolor	54.95	9.00e-172	596.00
IUUC-Sre-114996	Sporisorium reilianum	32.47	3.00e-41	162.00
IUUC-Tgu-116614	Taeniopygia guttata	31.50	2.00e-61	229.00
IUUC-Tsy-118845	Tarsius syrichta	28.61	2.00e-30	127.00
IUUC-Tca-121052	Theobroma cacao	68.60	0.00e+00	808.00
IUUC-Tae-125477	Triticum aestivum	55.21	5.00e-178	617.00
IUUC-Tur-126660	Triticum urartu	50.75	5.00e-172	597.00
IUUC-Ttr-128970	Tursiops truncatus	33.13	8.00e-62	231.00
IUUC-Uma-129369	Ustilago maydis	30.72	9.00e-36	144.00
IUUC-Xtr-132836	Xenopus tropicalis	30.03	3.00e-60	226.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence