iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Yli-134341

Ensembl Protein ID

CAG78531

UniProt Accession

Q6C0U2; CMR1_YARLI

Genbank Protein ID

CAG78531.1

Protein Name

DNA damage-binding protein CMR1

Genbank Nucleotide ID

CR382132

Gene Name

YALI0F21747g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
YALI0_F21747g	CAG78531	CAG78531

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.50e-14	50.0	327	350

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 10   af.sdtllvsGsdDgtikvWDlrt 32
           +  +++ll++Gs D ++++WDlr 
   Q: 327  DPiNTHLLATGSLDRSMRIWDLRA 350
           43455889*************986 PP

Organism

Yarrowia lipolytica

Functional Description
(View)

DNA-binding protein that binds to both single- and double-stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.

Protein Sequence
(Fasta)

MSELEQIRLA NIERNKALLA ALNLPTEAKK ESVDPEVAPK KSRKRNSARL ESPDDGSDDS 60
APRTRRKSRR LQGLDPEANA LKQEDLGGSG ELKRLMQQLN GGVKKERLSG DLSLKEMLTK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAGTGAAC TGGAGCAGAT TCGTCTGGCC AACATTGAGC GAAACAAAGC ACTGTTGGCG 60
GCTCTGAATC TTCCCACAGA GGCCAAAAAG GAGAGCGTGG ACCCTGAGGT TGCGCCGAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0227--DNA damage
KW-0238--DNA-binding
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR033052--Cmr1/WDR76
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005737--C:cytoplasm
GO:0000790--C:nuclear chromatin
GO:0034399--C:nuclear periphery
GO:0003677--F:DNA binding
GO:0006974--P:cellular response to DNA damage stimulus
GO:2000001--P:regulation of DNA damage checkpoint

KEGG

yli:YALI0F21747g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000470	Aegilops tauschii	24.35	7.00e-16	76.60
IUUC-Atr-002605	Amborella trichopoda	23.84	1.00e-18	85.50
IUUC-Apl-003441	Anas platyrhynchos	22.36	6.00e-20	89.70
IUUC-Aca-004241	Anolis carolinensis	25.45	4.00e-22	97.40
IUUC-Aly-005444	Arabidopsis lyrata	23.21	3.00e-23	100.00
IUUC-Ath-007550	Arabidopsis thaliana	21.99	4.00e-20	90.50
IUUC-Ago-007715	Ashbya gossypii	30.70	3.00e-60	223.00
IUUC-Acl-008370	Aspergillus clavatus	33.91	6.00e-74	269.00
IUUC-Afl-008586	Aspergillus flavus	32.35	2.00e-67	247.00
IUUC-Afu-008907	Aspergillus fumigatus	33.74	6.00e-71	259.00
IUUC-Ani-009415	Aspergillus nidulans	36.63	2.00e-65	241.00
IUUC-Ang-009597	Aspergillus niger	26.65	4.00e-22	97.10
IUUC-Aor-010197	Aspergillus oryzae	32.52	2.00e-67	248.00
IUUC-Ate-010280	Aspergillus terreus	33.98	2.00e-71	260.00
IUUC-Bgr-012236	Blumeria graminis	33.80	9.00e-73	265.00
IUUC-Bta-013059	Bos taurus	25.00	9.00e-21	93.20
IUUC-Bci-013796	Botrytis cinerea	35.61	1.00e-79	288.00
IUUC-Bdi-015040	Brachypodium distachyon	25.14	2.00e-15	74.70
IUUC-Bol-015202	Brassica oleracea	22.79	7.00e-22	96.70
IUUC-Bra-018032	Brassica rapa	24.94	2.00e-22	99.00
IUUC-Cja-019043	Callithrix jacchus	25.46	6.00e-21	93.60
IUUC-Cfa-021103	Canis familiaris	25.56	4.00e-22	97.40
IUUC-Cpo-021508	Cavia porcellus	25.72	3.00e-23	101.00
IUUC-Cre-022967	Chlamydomonas reinhardtii	22.39	2.00e-09	55.50
IUUC-Csa-023555	Chlorocebus sabaeus	25.13	1.00e-19	89.00
IUUC-Cho-024931	Choloepus hoffmanni	40.74	9.00e-06	43.10
IUUC-Cin-025651	Ciona intestinalis	23.11	7.00e-20	90.10
IUUC-Cgl-026604	Colletotrichum gloeosporioides	34.56	6.00e-68	249.00
IUUC-Cne-027093	Cryptococcus neoformans	24.55	8.00e-30	122.00
IUUC-Cme-027238	Cyanidioschyzon merolae	25.19	3.00e-16	78.20
IUUC-Dre-027441	Danio rerio	26.32	4.00e-25	107.00
IUUC-Dno-029575	Dasypus novemcinctus	24.94	4.00e-19	87.40
IUUC-Dor-030554	Dipodomys ordii	26.04	5.00e-24	103.00
IUUC-Dse-031299	Dothistroma septosporum	34.09	2.00e-71	261.00
IUUC-Ete-032716	Echinops telfairi	37.35	5.00e-09	53.90
IUUC-Eca-034027	Equus caballus	26.92	3.00e-12	64.70
IUUC-Eeu-035234	Erinaceus europaeus	38.55	9.00e-11	59.70
IUUC-Fca-035892	Felis catus	26.37	1.00e-21	95.90
IUUC-Fal-036986	Ficedula albicollis	23.31	1.00e-15	75.90
IUUC-Fox-037750	Fusarium oxysporum	34.41	5.00e-72	263.00
IUUC-Fso-038198	Fusarium solani	35.96	4.00e-66	243.00
IUUC-Gga-040479	Gallus gallus	36.47	4.00e-10	57.40
IUUC-Gac-042043	Gasterosteus aculeatus	23.84	4.00e-17	80.50
IUUC-Gma-042915	Glycine max	21.35	2.00e-20	91.30
IUUC-Ggo-045290	Gorilla gorilla	24.67	4.00e-21	94.40
IUUC-Hsa-047021	Homo sapiens	24.67	8.00e-21	93.20
IUUC-Hvu-047193	Hordeum vulgare	26.18	3.00e-18	84.00
IUUC-Itr-047914	Ictidomys tridecemlineatus	24.94	5.00e-22	97.40
IUUC-Kpa-049275	Komagataella pastoris	34.09	2.00e-75	274.00
IUUC-Lch-049718	Latimeria chalumnae	23.47	3.00e-23	101.00
IUUC-Loc-052565	Lepisosteus oculatus	24.64	5.00e-28	116.00
IUUC-Lma-053276	Leptosphaeria maculans	34.86	6.00e-74	270.00
IUUC-Laf-053970	Loxodonta africana	25.06	3.00e-24	104.00
IUUC-Mcc-054740	Macaca mulatta	25.13	1.00e-19	89.00
IUUC-Meu-056546	Macropus eugenii	34.02	1.00e-11	62.80
IUUC-Mtr-058451	Medicago truncatula	22.51	5.00e-23	100.00
IUUC-Mla-059117	Melampsora laricipopulina	28.67	1.00e-40	159.00
IUUC-Mga-059328	Meleagris gallopavo	23.00	2.00e-16	78.60
IUUC-Mvi-060555	Microbotryum violaceum	28.40	8.00e-37	146.00
IUUC-Mmr-061520	Microcebus murinus	25.68	2.00e-25	108.00
IUUC-Mdo-062812	Monodelphis domestica	25.72	8.00e-27	113.00
IUUC-Mmu-064011	Mus musculus	28.50	2.00e-11	62.00
IUUC-Mac-065598	Musa acuminata	24.53	4.00e-14	70.90
IUUC-Mpu-066486	Mustela putorius furo	25.65	3.00e-22	98.20
IUUC-Mlu-067721	Myotis lucifugus	27.84	8.00e-12	63.20
IUUC-Nfi-068314	Neosartorya fischeri	33.22	4.00e-69	253.00
IUUC-Ncr-068896	Neurospora crassa	33.45	5.00e-69	253.00
IUUC-Nle-069369	Nomascus leucogenys	24.41	1.00e-20	92.80
IUUC-Opr-070975	Ochotona princeps	25.58	2.00e-19	89.00
IUUC-Ont-072528	Oreochromis niloticus	24.59	2.00e-20	91.70
IUUC-Oan-072955	Ornithorhynchus anatinus	24.87	9.00e-18	82.80
IUUC-Ocu-074561	Oryctolagus cuniculus	24.13	1.00e-17	82.80
IUUC-Oba-074982	Oryza barthii	24.57	2.00e-15	75.50
IUUC-Obr-076605	Oryza brachyantha	22.94	9.00e-15	73.20
IUUC-Ogl-077685	Oryza glaberrima	24.35	7.00e-16	76.30
IUUC-Ogu-078331	Oryza glumaepatula	24.35	9.00e-16	75.90
IUUC-Oin-079980	Oryza indica	23.20	3.00e-14	71.20
IUUC-Olo-080516	Oryza longistaminata	23.58	5.00e-14	70.10
IUUC-Ome-081415	Oryza meridionalis	23.14	7.00e-14	70.10
IUUC-Oni-082051	Oryza nivara	24.35	2.00e-15	75.10
IUUC-Opu-083372	Oryza punctata	23.79	2.00e-15	74.70
IUUC-Oru-084578	Oryza rufipogon	24.35	9.00e-16	75.90
IUUC-Osa-086177	Oryza sativa	24.35	9.00e-16	75.90
IUUC-Ola-087208	Oryzias latipes	23.63	3.00e-15	74.30
IUUC-Olu-087680	Ostreococcus lucimarinus	22.70	1.00e-20	92.00
IUUC-Oga-088104	Otolemur garnettii	27.86	3.00e-25	107.00
IUUC-Oar-090157	Ovis aries	25.50	8.00e-22	96.70
IUUC-Ptr-091615	Pan troglodytes	24.41	1.00e-20	92.80
IUUC-Pan-092212	Papio anubis	25.13	2.00e-19	88.60
IUUC-Psi-092950	Pelodiscus sinensis	24.82	1.00e-23	102.00
IUUC-Pma-094625	Petromyzon marinus	32.41	2.00e-10	57.40
IUUC-Pno-094824	Phaeosphaeria nodorum	36.22	2.00e-79	287.00
IUUC-Ppa-095414	Physcomitrella patens	22.16	7.00e-13	67.00
IUUC-Pfo-096922	Poecilia formosa	24.09	6.00e-30	123.00
IUUC-Pab-097591	Pongo abelii	24.67	5.00e-21	94.00
IUUC-Pop-099337	Populus trichocarpa	23.68	3.00e-27	114.00
IUUC-Pca-101025	Procavia capensis	24.76	4.00e-11	60.80
IUUC-Ppe-101256	Prunus persica	21.90	3.00e-14	71.20
IUUC-Pva-102453	Pteropus vampyrus	26.68	4.00e-22	97.80
IUUC-Pgr-103436	Puccinia graminis	29.94	3.00e-30	124.00
IUUC-Ptt-103899	Puccinia triticina	28.74	4.00e-30	124.00
IUUC-Pte-104258	Pyrenophora teres	33.21	9.00e-72	262.00
IUUC-Pyt-104625	Pyrenophora triticirepentis	34.46	9.00e-73	265.00
IUUC-Rno-104843	Rattus norvegicus	25.13	6.00e-23	100.00
IUUC-Sce-106189	Saccharomyces cerevisiae	32.52	6.00e-59	219.00
IUUC-Sha-106672	Sarcophilus harrisii	25.00	2.00e-27	115.00
IUUC-Smo-109176	Selaginella moellendorffii	24.57	6.00e-17	79.30
IUUC-Sit-109704	Setaria italica	22.96	6.00e-18	83.20
IUUC-Sly-111495	Solanum lycopersicum	22.61	2.00e-16	78.60
IUUC-Stu-112482	Solanum tuberosum	20.23	3.00e-11	60.80
IUUC-Sar-113537	Sorex araneus	32.50	7.00e-09	53.50
IUUC-Sbi-114517	Sorghum bicolor	25.21	2.00e-10	58.90
IUUC-Sre-114960	Sporisorium reilianum	26.33	2.00e-36	145.00
IUUC-Ssc-115568	Sus scrofa	26.82	4.00e-22	97.80
IUUC-Tgu-117276	Taeniopygia guttata	22.87	2.00e-14	71.20
IUUC-Tru-117559	Takifugu rubripes	31.40	9.00e-08	47.00
IUUC-Tsy-119234	Tarsius syrichta	36.47	1.00e-09	56.60
IUUC-Tni-120358	Tetraodon nigroviridis	22.95	9.00e-22	95.90
IUUC-Tca-121273	Theobroma cacao	22.98	2.00e-16	78.20
IUUC-Tre-121932	Trichoderma reesei	34.21	4.00e-68	249.00
IUUC-Tvi-122567	Trichoderma virens	33.69	1.00e-73	268.00
IUUC-Tae-123506	Triticum aestivum	25.06	2.00e-15	74.70
IUUC-Tur-126724	Triticum urartu	24.35	7.00e-16	76.60
IUUC-Tme-126958	Tuber melanosporum	34.58	2.00e-59	221.00
IUUC-Tbe-127425	Tupaia belangeri	25.92	3.00e-20	91.30
IUUC-Ttr-129123	Tursiops truncatus	25.19	4.00e-18	84.30
IUUC-Uma-129495	Ustilago maydis	28.09	6.00e-34	137.00
IUUC-Vda-129981	Verticillium dahliae	33.51	3.00e-75	273.00
IUUC-Vpa-130437	Vicugna pacos	26.49	9.00e-23	99.80
IUUC-Vvi-131430	Vitis vinifera	22.11	8.00e-16	76.30
IUUC-Xtr-132670	Xenopus tropicalis	24.86	6.00e-22	96.70
IUUC-Xma-133375	Xiphophorus maculatus	25.18	2.00e-23	101.00
IUUC-Zma-135413	Zea mays	23.04	1.00e-13	68.90

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence