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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Ath-007331
Ensembl Protein ID AT4G07410.1
UniProt Accession Q8RXU6; Q8RXU6_ARATH
Genbank Protein ID AAL86343.1; AAM91698.1; AEE82567.1
Protein Name Putative uncharacterized protein At4g07410; Transducin family protein / WD-40 repeat family protein
Genbank Nucleotide ID AY080667; AY133764; CP002687
Gene Name PCN; POPCORN; At4g07410; F28D6.14; F28D6_14
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT4G07410 AT4G07410.1 AT4G07410.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 7.10e-13 49.1 202 231
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 7    tclaf.sd.tllvsGsdDgtikvWDlrtgv 34
            ++ + +d +++ sGs Dg i++WD ++++
   Q: 202  LSVTWsPDaKRIFSGSSDGLIRCWDATSCH 231
           6899*********************88765 PP
   
Organism Arabidopsis thaliana
Protein Sequence
(Fasta)
MLEYRCSSVD WKPSPVVALA NSSDDSQVAA AREDGSLEIW LVSPGAVGWH CQLTIHGDPN 60
SRISSLAWCC SPSIGLPSGR LFSSSIDGSI SEWDLFDLKQ KIVLESIGIS IWQMALAPIS 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-007331|E3,WD_repeat|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
AAAATCCTCA AAAACCTAAT ACTTCATCGC CTCCTCTTCT TCTTCTCTCA TCTCCGTCTC 60
TCAGAGAGTG TACACTTCTC CTTCTGCTTC CGTCATGCTC GAGTACCGTT GCAGCTCCGT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-007331|E3,WD_repeat|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat
Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00400--WD40
SMART

SM00320--WD40
Gene Ontology

GO:0005634--C:nucleus
GO:0009793--P:embryo development ending in seed dormancy
GO:0010311--P:lateral root formation
GO:0048366--P:leaf development
GO:0010305--P:leaf vascular tissue pattern formation
GO:0035266--P:meristem growth
GO:0010073--P:meristem maintenance
GO:0090696--P:post-embryonic plant organ development
GO:2000012--P:regulation of auxin polar transport
GO:0010449--P:root meristem growth
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001161 Aegilops tauschii 49.36 0.00e+00 711.00
IUUC-Aml-001310 Ailuropoda melanoleuca 23.47 4.00e-45 175.00
IUUC-Atr-003076 Amborella trichopoda 52.68 0.00e+00 781.00
IUUC-Apl-003367 Anas platyrhynchos 31.33 2.00e-14 71.20
IUUC-Aca-004429 Anolis carolinensis 26.12 8.00e-24 103.00
IUUC-Aly-006271 Arabidopsis lyrata 93.87 0.00e+00 1437.00
IUUC-Ago-007843 Ashbya gossypii 23.22 9.00e-26 111.00
IUUC-Acl-008229 Aspergillus clavatus 25.88 6.00e-27 115.00
IUUC-Afl-008438 Aspergillus flavus 26.13 1.00e-25 111.00
IUUC-Afu-008910 Aspergillus fumigatus 25.61 2.00e-26 114.00
IUUC-Ani-009321 Aspergillus nidulans 26.86 9.00e-29 121.00
IUUC-Aor-010220 Aspergillus oryzae 26.13 1.00e-25 111.00
IUUC-Ate-010317 Aspergillus terreus 26.15 1.00e-27 117.00
IUUC-Ame-010957 Astyanax mexicanus 24.96 1.00e-42 167.00
IUUC-Bgr-012057 Blumeria graminis 28.53 1.00e-29 124.00
IUUC-Bta-012473 Bos taurus 23.21 4.00e-42 165.00
IUUC-Bdi-014203 Brachypodium distachyon 53.06 0.00e+00 810.00
IUUC-Bol-016163 Brassica oleracea 86.03 0.00e+00 1380.00
IUUC-Bra-017482 Brassica rapa 85.91 0.00e+00 1384.00
IUUC-Cja-019942 Callithrix jacchus 23.71 4.00e-45 175.00
IUUC-Cfa-020549 Canis familiaris 24.36 1.00e-34 140.00
IUUC-Cpo-022088 Cavia porcellus 24.59 4.00e-43 168.00
IUUC-Csa-023773 Chlorocebus sabaeus 23.83 3.00e-46 179.00
IUUC-Cho-024302 Choloepus hoffmanni 24.10 1.00e-35 144.00
IUUC-Cin-025384 Ciona intestinalis 25.07 4.00e-44 172.00
IUUC-Dre-027460 Danio rerio 22.85 5.00e-45 175.00
IUUC-Dno-029594 Dasypus novemcinctus 23.60 1.00e-42 167.00
IUUC-Dor-030564 Dipodomys ordii 22.90 2.00e-13 70.50
IUUC-Dse-031179 Dothistroma septosporum 21.50 7.00e-23 102.00
IUUC-Dme-031603 Drosophila melanogaster 22.74 7.00e-19 88.60
IUUC-Ete-032655 Echinops telfairi 23.12 3.00e-32 132.00
IUUC-Eca-033838 Equus caballus 23.82 2.00e-44 172.00
IUUC-Eeu-034548 Erinaceus europaeus 22.34 1.00e-36 147.00
IUUC-Fca-035715 Felis catus 23.62 2.00e-45 176.00
IUUC-Fal-037394 Ficedula albicollis 24.16 2.00e-34 139.00
IUUC-Gmo-039235 Gadus morhua 22.16 2.00e-42 167.00
IUUC-Ggr-040043 Gaeumannomyces graminis 25.34 3.00e-23 103.00
IUUC-Gga-041172 Gallus gallus 24.79 4.00e-47 182.00
IUUC-Gac-042466 Gasterosteus aculeatus 23.77 4.00e-44 172.00
IUUC-Gma-044129 Glycine max 56.00 0.00e+00 886.00
IUUC-Ggo-045416 Gorilla gorilla 23.59 2.00e-40 159.00
IUUC-Hsa-046115 Homo sapiens 24.39 1.00e-44 174.00
IUUC-Hvu-047229 Hordeum vulgare 53.80 0.00e+00 665.00
IUUC-Itr-048015 Ictidomys tridecemlineatus 23.42 3.00e-44 172.00
IUUC-Kpa-049370 Komagataella pastoris 25.91 2.00e-16 80.50
IUUC-Lch-050153 Latimeria chalumnae 26.25 3.00e-45 176.00
IUUC-Lpe-051220 Leersia perrieri 52.47 0.00e+00 776.00
IUUC-Loc-052617 Lepisosteus oculatus 24.40 2.00e-44 173.00
IUUC-Laf-053613 Loxodonta africana 22.91 5.00e-42 165.00
IUUC-Mcc-055707 Macaca mulatta 23.90 7.00e-45 174.00
IUUC-Meu-056800 Macropus eugenii 23.71 2.00e-16 80.90
IUUC-Mor-057245 Magnaporthe oryzae 27.68 2.00e-27 117.00
IUUC-Mpo-057446 Magnaporthe poae 26.95 1.00e-24 108.00
IUUC-Mtr-058393 Medicago truncatula 52.60 0.00e+00 784.00
IUUC-Mga-060018 Meleagris gallopavo 24.78 6.00e-40 158.00
IUUC-Mmr-061115 Microcebus murinus 25.04 3.00e-44 172.00
IUUC-Mdo-062235 Monodelphis domestica 24.73 2.00e-49 189.00
IUUC-Mmu-063158 Mus musculus 24.43 6.00e-45 175.00
IUUC-Mac-065380 Musa acuminata 56.26 0.00e+00 912.00
IUUC-Mpu-065805 Mustela putorius furo 23.86 3.00e-45 176.00
IUUC-Mlu-066951 Myotis lucifugus 23.52 7.00e-45 174.00
IUUC-Nfi-068295 Neosartorya fischeri 25.88 4.00e-27 116.00
IUUC-Ncr-068880 Neurospora crassa 24.78 4.00e-18 86.30
IUUC-Nle-069657 Nomascus leucogenys 23.95 2.00e-46 179.00
IUUC-Opr-070250 Ochotona princeps 22.81 2.00e-40 159.00
IUUC-Ont-072642 Oreochromis niloticus 23.97 4.00e-40 159.00
IUUC-Ocu-074741 Oryctolagus cuniculus 23.65 2.00e-41 163.00
IUUC-Oba-074974 Oryza barthii 52.59 0.00e+00 796.00
IUUC-Obr-076586 Oryza brachyantha 54.27 0.00e+00 686.00
IUUC-Ogl-077782 Oryza glaberrima 53.79 0.00e+00 807.00
IUUC-Ogu-078333 Oryza glumaepatula 50.57 0.00e+00 780.00
IUUC-Oin-079852 Oryza indica 53.91 0.00e+00 809.00
IUUC-Olo-080370 Oryza longistaminata 54.40 0.00e+00 645.00
IUUC-Ome-081442 Oryza meridionalis 52.86 0.00e+00 793.00
IUUC-Oni-082341 Oryza nivara 50.34 0.00e+00 778.00
IUUC-Opu-083824 Oryza punctata 52.23 0.00e+00 781.00
IUUC-Oru-084827 Oryza rufipogon 52.35 0.00e+00 793.00
IUUC-Osa-085742 Oryza sativa 53.67 0.00e+00 805.00
IUUC-Ola-086466 Oryzias latipes 25.85 2.00e-42 166.00
IUUC-Olu-087761 Ostreococcus lucimarinus 26.09 5.00e-61 228.00
IUUC-Oga-088721 Otolemur garnettii 24.89 7.00e-38 151.00
IUUC-Oar-089532 Ovis aries 22.99 8.00e-43 167.00
IUUC-Ptr-091604 Pan troglodytes 23.95 1.00e-46 180.00
IUUC-Pan-092060 Papio anubis 26.00 6.00e-29 120.00
IUUC-Psi-093070 Pelodiscus sinensis 24.20 9.00e-41 160.00
IUUC-Ppa-095599 Physcomitrella patens 43.12 3.00e-101 362.00
IUUC-Pfo-097207 Poecilia formosa 26.25 2.00e-44 173.00
IUUC-Pab-097746 Pongo abelii 23.71 4.00e-46 179.00
IUUC-Pop-099991 Populus trichocarpa 64.26 0.00e+00 1053.00
IUUC-Pca-100562 Procavia capensis 25.39 4.00e-32 132.00
IUUC-Ppe-101747 Prunus persica 66.31 0.00e+00 1030.00
IUUC-Pva-103054 Pteropus vampyrus 23.62 5.00e-44 172.00
IUUC-Pte-104064 Pyrenophora teres 25.88 2.00e-22 100.00
IUUC-Pyt-104595 Pyrenophora triticirepentis 25.61 1.00e-22 101.00
IUUC-Rno-105155 Rattus norvegicus 23.26 2.00e-43 170.00
IUUC-Sce-106369 Saccharomyces cerevisiae 23.72 2.00e-26 113.00
IUUC-Sha-107149 Sarcophilus harrisii 24.16 1.00e-47 184.00
IUUC-Sja-107777 Schizosaccharomyces japonicus 24.61 3.00e-51 196.00
IUUC-Spo-108372 Schizosaccharomyces pombe 23.32 2.00e-43 170.00
IUUC-Smo-108851 Selaginella moellendorffii 40.05 4.00e-161 561.00
IUUC-Sit-110454 Setaria italica 53.77 0.00e+00 809.00
IUUC-Sly-111020 Solanum lycopersicum 59.57 0.00e+00 926.00
IUUC-Stu-112330 Solanum tuberosum 60.70 0.00e+00 928.00
IUUC-Sar-113254 Sorex araneus 25.66 3.00e-13 70.10
IUUC-Sbi-114624 Sorghum bicolor 54.78 0.00e+00 682.00
IUUC-Sre-114985 Sporisorium reilianum 23.21 1.00e-10 61.60
IUUC-Tgu-117407 Taeniopygia guttata 25.71 1.00e-18 86.70
IUUC-Tru-118733 Takifugu rubripes 22.50 2.00e-35 143.00
IUUC-Tsy-119213 Tarsius syrichta 28.10 1.00e-24 107.00
IUUC-Tni-120894 Tetraodon nigroviridis 29.26 1.00e-30 126.00
IUUC-Tca-121606 Theobroma cacao 61.52 0.00e+00 988.00
IUUC-Tre-121958 Trichoderma reesei 26.90 5.00e-25 109.00
IUUC-Tvi-122290 Trichoderma virens 24.23 4.00e-24 106.00
IUUC-Tae-125441 Triticum aestivum 51.27 0.00e+00 796.00
IUUC-Ttr-128720 Tursiops truncatus 23.11 3.00e-44 172.00
IUUC-Uma-129564 Ustilago maydis 23.93 5.00e-11 62.80
IUUC-Vpa-130412 Vicugna pacos 25.68 4.00e-23 102.00
IUUC-Vvi-131256 Vitis vinifera 63.04 0.00e+00 984.00
IUUC-Xtr-131828 Xenopus tropicalis 23.28 8.00e-37 148.00
IUUC-Xma-133394 Xiphophorus maculatus 26.84 1.00e-46 180.00
IUUC-Yli-134565 Yarrowia lipolytica 23.89 1.00e-25 110.00
Created Date 25-Jun-2017

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