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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Rno-105262
Ensembl Protein ID ENSRNOP00000005066.3
UniProt Accession B1WBL5; B1WBL5_RAT
Genbank Protein ID AAI61799.1; EDM04800.1
Protein Name Cilia and flagella-associated protein 52; RCG34742; Ubiquitin specific peptidase 43
Genbank Nucleotide ID AABR07029837; CH473948
Gene Name Cfap52; Usp43; Wdr16; rCG_34742
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000037718.2 ENSRNOT00000005066.4 ENSRNOP00000005066.3
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
RAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 2.10e-33 113.3 460 491
UBD/Beta-Prp 2.80e-59 201.1 504 614
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWDlr 31
    H++sv+c++ ++ v++s Dgt+ +WDl
   Q: 460 HKSSVSCIRVkkNNEECVTASTDGTCIIWDLV 491
    9**********87799**************85 PP
   


   UBD/Beta-Prp

   S: 139  vvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvks 227
    + +cv++hp+++ ++++++Dr++ W + g+++r+l+g +sv+ ++++++g+++v+g++d +k+wd+ +ge+ + gh+ n+
   Q: 504 LFQCVCYHPEEFQIITSGTDRKIAYWEVFDGSVIRELEGSLSGSVNGMDITQEGEHFVTGGHDHLIKVWDYNEGEVTHVGVGHSGNIMG 592
    578************************************************************************************** PP
   S: 228 vrfspnderlvsgssDgsiriW 249
    +r sp ++++vs+s+Dg i W
   Q: 593 IRISPGNQYIVSVSADGAILRW 614
    *******************999 PP
   

Organism Rattus norvegicus
Protein Sequence
(Fasta)
MEEQILPETD VAELELQAVI GFNGHVPNGL KCHPDQEHLV YPLGCTVLIQ AINTNEQNFL 60
HGHGNNVSCV TISKEGDYVA SGQVTFMGFK ADIILWDFKK RELIARLSLH KGKIEALAFS 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Rno-105262|E3,WD_repeat;UBD,Beta-Prp|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATAACGACTA GGAGACGCTG CACCCTGGAG TTGAGGAATC AACCAGCTGA AACTCTCCAG 60
GATGGAAGAA CAAATTTTAC CCGAGACCGA CGTAGCCGAA CTGGAGCTTC AGGCTGTGAT 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Rno-105262|E3,WD_repeat;UBD,Beta-Prp|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR033015--CFAP52
IPR023302--Pept_S9A_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

KEGG rno:303233
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-002048 Ailuropoda melanoleuca 91.77 0.00e+00 1175.00
IUUC-Apl-004011 Anas platyrhynchos 70.81 0.00e+00 904.00
IUUC-Aca-004805 Anolis carolinensis 73.17 0.00e+00 956.00
IUUC-Ame-010655 Astyanax mexicanus 62.15 0.00e+00 798.00
IUUC-Bta-013493 Bos taurus 91.85 0.00e+00 1140.00
IUUC-Cja-019923 Callithrix jacchus 90.97 0.00e+00 1168.00
IUUC-Cfa-020609 Canis familiaris 92.10 0.00e+00 1164.00
IUUC-Cpo-022158 Cavia porcellus 91.68 0.00e+00 1147.00
IUUC-Cre-022705 Chlamydomonas reinhardtii 45.56 8.00e-162 563.00
IUUC-Csa-023338 Chlorocebus sabaeus 91.45 0.00e+00 1176.00
IUUC-Cho-024884 Choloepus hoffmanni 85.05 0.00e+00 717.00
IUUC-Cin-025634 Ciona intestinalis 62.40 0.00e+00 807.00
IUUC-Csv-026211 Ciona savignyi 65.31 4.00e-96 343.00
IUUC-Dre-028268 Danio rerio 64.47 0.00e+00 872.00
IUUC-Dno-029202 Dasypus novemcinctus 86.02 0.00e+00 1046.00
IUUC-Dor-030197 Dipodomys ordii 80.73 0.00e+00 761.00
IUUC-Dme-032037 Drosophila melanogaster 35.96 5.00e-114 405.00
IUUC-Ete-033049 Echinops telfairi 81.88 0.00e+00 981.00
IUUC-Eca-033884 Equus caballus 92.26 0.00e+00 1155.00
IUUC-Eeu-034477 Erinaceus europaeus 80.38 2.00e-179 622.00
IUUC-Fca-035453 Felis catus 89.46 0.00e+00 1136.00
IUUC-Gmo-039448 Gadus morhua 64.75 2.00e-111 396.00
IUUC-Gga-040295 Gallus gallus 71.41 0.00e+00 942.00
IUUC-Gac-042074 Gasterosteus aculeatus 56.39 0.00e+00 705.00
IUUC-Ggo-044438 Gorilla gorilla 91.74 0.00e+00 909.00
IUUC-Hsa-046794 Homo sapiens 90.65 0.00e+00 1165.00
IUUC-Itr-048315 Ictidomys tridecemlineatus 94.81 0.00e+00 698.00
IUUC-Lch-050554 Latimeria chalumnae 67.07 0.00e+00 815.00
IUUC-Loc-052080 Lepisosteus oculatus 69.08 0.00e+00 903.00
IUUC-Laf-054288 Loxodonta africana 91.45 0.00e+00 1149.00
IUUC-Mcc-055746 Macaca mulatta 84.52 0.00e+00 1058.00
IUUC-Meu-056507 Macropus eugenii 74.03 7.00e-147 514.00
IUUC-Mga-059858 Meleagris gallopavo 71.24 0.00e+00 895.00
IUUC-Mmr-061757 Microcebus murinus 91.62 0.00e+00 1021.00
IUUC-Mdo-062670 Monodelphis domestica 82.28 0.00e+00 1084.00
IUUC-Mmu-064084 Mus musculus 97.58 0.00e+00 1241.00
IUUC-Mpu-066253 Mustela putorius furo 91.45 0.00e+00 1148.00
IUUC-Mlu-067944 Myotis lucifugus 76.03 0.00e+00 902.00
IUUC-Nle-069098 Nomascus leucogenys 91.13 0.00e+00 1168.00
IUUC-Opr-070525 Ochotona princeps 83.64 0.00e+00 913.00
IUUC-Ont-071609 Oreochromis niloticus 58.08 0.00e+00 765.00
IUUC-Oan-073543 Ornithorhynchus anatinus 77.38 0.00e+00 996.00
IUUC-Ocu-074209 Oryctolagus cuniculus 90.65 0.00e+00 1172.00
IUUC-Ola-086464 Oryzias latipes 55.92 0.00e+00 732.00
IUUC-Olu-087600 Ostreococcus lucimarinus 33.03 6.00e-94 338.00
IUUC-Oga-088977 Otolemur garnettii 91.13 0.00e+00 1170.00
IUUC-Oar-089192 Ovis aries 91.68 0.00e+00 1139.00
IUUC-Ptr-090882 Pan troglodytes 86.10 0.00e+00 1077.00
IUUC-Pan-092865 Papio anubis 86.98 0.00e+00 1106.00
IUUC-Psi-093270 Pelodiscus sinensis 75.80 0.00e+00 852.00
IUUC-Pma-094291 Petromyzon marinus 63.30 0.00e+00 854.00
IUUC-Ppa-095984 Physcomitrella patens 42.36 3.00e-147 515.00
IUUC-Pfo-097344 Poecilia formosa 50.74 0.00e+00 676.00
IUUC-Pab-098278 Pongo abelii 91.13 0.00e+00 1169.00
IUUC-Pca-101037 Procavia capensis 92.28 0.00e+00 1144.00
IUUC-Pva-102351 Pteropus vampyrus 91.91 0.00e+00 964.00
IUUC-Smo-109009 Selaginella moellendorffii 43.84 8.00e-162 563.00
IUUC-Sar-113156 Sorex araneus 78.55 2.00e-140 492.00
IUUC-Ssc-116319 Sus scrofa 90.24 4.00e-64 236.00
IUUC-Tru-117963 Takifugu rubripes 55.65 0.00e+00 723.00
IUUC-Tsy-119115 Tarsius syrichta 72.15 0.00e+00 820.00
IUUC-Tni-120388 Tetraodon nigroviridis 54.16 0.00e+00 687.00
IUUC-Tbe-127930 Tupaia belangeri 82.07 0.00e+00 630.00
IUUC-Ttr-128981 Tursiops truncatus 90.77 0.00e+00 1094.00
IUUC-Vpa-130492 Vicugna pacos 83.56 0.00e+00 1043.00
IUUC-Xtr-132142 Xenopus tropicalis 69.14 0.00e+00 918.00
Created Date 25-Jun-2017

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