iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sbi-114272

Ensembl Protein ID

Sb01g006440.1

UniProt Accession

C5WZ41; C5WZ41_SORBI

Genbank Protein ID

EER90801.1; KXG37446.1

Protein Name

Protein HIRA

Genbank Nucleotide ID

CM000760; CM000760

Gene Name

SORBI_001G071400

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb01g006440	Sb01g006440.1	Sb01g006440.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	8.80e-23	80.3	123	160

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           gHt++v +l++ +d  +l+sGs D+t+++W+++ g ++
   Q: 123  GHTADVVDLNWsPDdSTLASGSLDNTVHIWNMTNGMCT 160
           8***********77799****************99986 PP

Organism

Sorghum bicolor

Functional Description
(View)

Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle.

Protein Sequence
(Fasta)

MITEKPSWIR HEGLQIFSID IQPGGLRFAT GGGDQKVRIW SMKSVDKNNA NNDSSQGLLA 60
TMRDHFGSVN CVRWARHGRY LASGSDDQVI LIHERKAGSG TSEFGSGEPP DVENWKVVMT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAAAGCAAA TTAATTTGTC GACACATCTC TGCCTTTCCT TCACACTTTC CAATTCAGTT 60
CAATTTTCAT TCGAATTCGT TTTCGTTTTC CGTTCGTTTT GGTTTTTGTT CCTTTCTCAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0156--Chromatin regulator
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0853--WD repeat

Interpro

IPR031120--HIR1
IPR011494--Hira
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF07569--Hira
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0000790--C:nuclear chromatin
GO:0031491--F:nucleosome binding
GO:0003714--F:transcription corepressor activity
GO:0016569--P:covalent chromatin modification
GO:0006336--P:DNA replication-independent nucleosome assembly
GO:0031935--P:regulation of chromatin silencing
GO:0006351--P:transcription, DNA-templated

KEGG

sbi:SORBI_01g006440

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001723	Ailuropoda melanoleuca	42.45	9.00e-83	301.00
IUUC-Atr-003132	Amborella trichopoda	68.34	0.00e+00	1333.00
IUUC-Apl-003197	Anas platyrhynchos	38.49	4.00e-86	312.00
IUUC-Aca-004733	Anolis carolinensis	38.11	3.00e-90	325.00
IUUC-Aly-005446	Arabidopsis lyrata	66.84	0.00e+00	1233.00
IUUC-Ath-007627	Arabidopsis thaliana	64.42	0.00e+00	1222.00
IUUC-Acl-008104	Aspergillus clavatus	33.02	4.00e-73	269.00
IUUC-Afl-008591	Aspergillus flavus	30.78	3.00e-68	252.00
IUUC-Ani-009272	Aspergillus nidulans	30.17	6.00e-59	221.00
IUUC-Bgr-012237	Blumeria graminis	31.59	7.00e-67	248.00
IUUC-Bta-013320	Bos taurus	36.67	2.00e-83	303.00
IUUC-Bci-013795	Botrytis cinerea	31.38	2.00e-72	266.00
IUUC-Bdi-014075	Brachypodium distachyon	84.88	0.00e+00	1666.00
IUUC-Bol-016440	Brassica oleracea	66.53	0.00e+00	1223.00
IUUC-Bra-016651	Brassica rapa	65.94	0.00e+00	1194.00
IUUC-Cel-018692	Caenorhabditis elegans	28.64	3.00e-46	179.00
IUUC-Cja-018987	Callithrix jacchus	36.48	1.00e-76	280.00
IUUC-Cfa-020132	Canis familiaris	42.01	6.00e-83	301.00
IUUC-Cpo-021484	Cavia porcellus	37.68	6.00e-87	315.00
IUUC-Csa-023081	Chlorocebus sabaeus	37.88	2.00e-88	319.00
IUUC-Cin-025182	Ciona intestinalis	36.90	5.00e-85	308.00
IUUC-Csv-026154	Ciona savignyi	37.38	9.00e-86	310.00
IUUC-Cgl-026655	Colletotrichum gloeosporioides	30.78	5.00e-66	245.00
IUUC-Cne-026891	Cryptococcus neoformans	42.71	4.00e-80	291.00
IUUC-Cme-027349	Cyanidioschyzon merolae	29.73	2.00e-54	207.00
IUUC-Dre-027655	Danio rerio	36.76	9.00e-85	307.00
IUUC-Dno-029557	Dasypus novemcinctus	42.81	3.00e-71	262.00
IUUC-Dme-031746	Drosophila melanogaster	36.29	2.00e-88	320.00
IUUC-Ete-032384	Echinops telfairi	33.20	1.00e-62	234.00
IUUC-Eca-033430	Equus caballus	37.27	8.00e-84	304.00
IUUC-Fca-036121	Felis catus	42.56	2.00e-84	306.00
IUUC-Fal-036817	Ficedula albicollis	37.70	1.00e-85	310.00
IUUC-Fox-037906	Fusarium oxysporum	33.54	1.00e-72	266.00
IUUC-Fso-038409	Fusarium solani	32.49	3.00e-71	262.00
IUUC-Gmo-039151	Gadus morhua	40.31	1.00e-82	300.00
IUUC-Gga-040936	Gallus gallus	38.81	2.00e-90	327.00
IUUC-Gac-041405	Gasterosteus aculeatus	37.27	9.00e-82	297.00
IUUC-Gma-044252	Glycine max	72.30	0.00e+00	1397.00
IUUC-Ggo-045430	Gorilla gorilla	37.88	2.00e-88	319.00
IUUC-Hsa-046442	Homo sapiens	37.88	2.00e-88	320.00
IUUC-Itr-048910	Ictidomys tridecemlineatus	42.72	5.00e-64	236.00
IUUC-Lch-050474	Latimeria chalumnae	36.99	9.00e-84	304.00
IUUC-Lpe-051209	Leersia perrieri	84.06	0.00e+00	1636.00
IUUC-Loc-052119	Lepisosteus oculatus	36.38	1.00e-83	303.00
IUUC-Laf-053718	Loxodonta africana	37.77	2.00e-88	320.00
IUUC-Mcc-055621	Macaca mulatta	36.48	4.00e-75	275.00
IUUC-Meu-055914	Macropus eugenii	38.89	7.00e-57	215.00
IUUC-Mor-057090	Magnaporthe oryzae	35.75	7.00e-70	258.00
IUUC-Mtr-057744	Medicago truncatula	72.31	0.00e+00	1379.00
IUUC-Mla-058914	Melampsora laricipopulina	26.41	1.00e-79	290.00
IUUC-Mga-060181	Meleagris gallopavo	38.46	3.00e-86	312.00
IUUC-Mvi-060432	Microbotryum violaceum	33.50	2.00e-58	220.00
IUUC-Mmr-060871	Microcebus murinus	38.08	2.00e-89	323.00
IUUC-Mdo-062301	Monodelphis domestica	38.22	1.00e-88	320.00
IUUC-Mmu-063888	Mus musculus	38.08	4.00e-89	322.00
IUUC-Mac-064768	Musa acuminata	71.34	0.00e+00	1379.00
IUUC-Mpu-066732	Mustela putorius furo	42.45	8.00e-83	301.00
IUUC-Mlu-067542	Myotis lucifugus	37.35	6.00e-85	308.00
IUUC-Ncr-068842	Neurospora crassa	35.73	8.00e-72	265.00
IUUC-Nle-070156	Nomascus leucogenys	37.88	2.00e-88	319.00
IUUC-Ont-072105	Oreochromis niloticus	36.80	2.00e-83	303.00
IUUC-Ocu-074962	Oryctolagus cuniculus	37.47	4.00e-84	305.00
IUUC-Oba-075178	Oryza barthii	85.36	0.00e+00	1598.00
IUUC-Obr-076399	Oryza brachyantha	84.68	0.00e+00	1625.00
IUUC-Ogu-078797	Oryza glumaepatula	85.36	0.00e+00	1598.00
IUUC-Oin-080085	Oryza indica	84.70	0.00e+00	1509.00
IUUC-Olo-081048	Oryza longistaminata	84.95	0.00e+00	712.00
IUUC-Ome-081324	Oryza meridionalis	85.25	0.00e+00	1597.00
IUUC-Oni-082548	Oryza nivara	84.73	0.00e+00	1594.00
IUUC-Oru-084339	Oryza rufipogon	85.36	0.00e+00	1598.00
IUUC-Osa-085782	Oryza sativa	85.36	0.00e+00	1598.00
IUUC-Oga-087935	Otolemur garnettii	37.88	8.00e-84	304.00
IUUC-Oar-089229	Ovis aries	33.60	2.00e-66	246.00
IUUC-Ptr-090715	Pan troglodytes	37.88	2.00e-88	320.00
IUUC-Pan-092318	Papio anubis	37.45	2.00e-84	306.00
IUUC-Psi-094053	Pelodiscus sinensis	37.80	1.00e-85	310.00
IUUC-Ppa-095499	Physcomitrella patens	49.95	0.00e+00	914.00
IUUC-Pfo-096857	Poecilia formosa	36.61	6.00e-80	291.00
IUUC-Pab-098047	Pongo abelii	37.88	2.00e-88	320.00
IUUC-Pop-099587	Populus trichocarpa	70.73	0.00e+00	1347.00
IUUC-Pca-100558	Procavia capensis	50.26	4.00e-49	189.00
IUUC-Ppe-101261	Prunus persica	70.37	0.00e+00	1375.00
IUUC-Pva-102683	Pteropus vampyrus	37.47	6.00e-86	311.00
IUUC-Rno-105566	Rattus norvegicus	37.88	1.00e-88	320.00
IUUC-Sha-107514	Sarcophilus harrisii	35.77	3.00e-73	269.00
IUUC-Sit-109980	Setaria italica	88.61	0.00e+00	1770.00
IUUC-Sly-111547	Solanum lycopersicum	70.53	0.00e+00	1342.00
IUUC-Stu-112705	Solanum tuberosum	70.63	0.00e+00	1335.00
IUUC-Sar-113222	Sorex araneus	35.98	4.00e-76	279.00
IUUC-Ssc-116364	Sus scrofa	37.07	6.00e-84	305.00
IUUC-Tgu-116645	Taeniopygia guttata	37.70	1.00e-85	310.00
IUUC-Tru-117590	Takifugu rubripes	37.62	5.00e-88	318.00
IUUC-Tsy-119212	Tarsius syrichta	42.56	7.00e-71	261.00
IUUC-Tni-119915	Tetraodon nigroviridis	37.20	3.00e-87	315.00
IUUC-Tca-121765	Theobroma cacao	71.12	0.00e+00	1369.00
IUUC-Tur-126483	Triticum urartu	85.31	0.00e+00	1640.00
IUUC-Ttr-129077	Tursiops truncatus	34.02	2.00e-73	270.00
IUUC-Uma-129465	Ustilago maydis	33.47	2.00e-73	270.00
IUUC-Vda-129844	Verticillium dahliae	33.65	2.00e-68	253.00
IUUC-Vvi-131397	Vitis vinifera	73.03	0.00e+00	1399.00
IUUC-Xtr-132057	Xenopus tropicalis	38.54	1.00e-89	323.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence