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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Spo-108163
UUCD1 version UUC-ScP-00239
Ensembl Protein ID SPAC12G12.14c.1:pep
UniProt Accession Q9UTN4; Q09876; PFS2_SCHPO
Genbank Protein ID CAB55873.1
Protein Name Polyadenylation factor subunit 2
Genbank Nucleotide ID CU329670
Gene Name pfs2; SPAC12G12.14c
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
SPAC12G12.14c SPAC12G12.14c.1 SPAC12G12.14c.1:pep
Annotation
mRNA Expression
GEO
Protein-protein Interaction
iRefIndexMentha
Protein Expression/Proteomics
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 2.60e-35 117.1 209 241
UBD/Beta-Prp 2.30e-60 202.4 75 340
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 6    vtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
    v +++ ++ +ll+sGs D+ +k WD+rtg+++
   Q: 209 VKTVDWhPSkGLLASGSKDNLVKFWDPRTGTCI 241
    7889***888*********************97 PP
   


   UBD/Beta-Prp

   S: 4    tlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkgh 93
    t+ ++ +vi++v ++pd++ l+tgs +g ++w+ t ++ ++h+ +v++ ++s dg +l++g +++k ++++ + v ++++h
   Q: 75 TSANKARHVINVVRWTPDGRRLLTGSSTGEFTLWNGLTFNFELINQSHDYAVRCAEWSTDGRWLISGDGGGMVKYFEPNLN-NVKIVQAH 163
    66777889******************************9998888*******************************77654.4566788* PP
   S: 94 edsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsv 183
    e +v++++fsp+++k+v++s+d ++vw+ + ++ l+gh v +v +hp++ ll+sGs+D+ v++Wd +tg+++ tl g h++ +
   Q: 164 EMEVRDVAFSPNDSKFVTASDDGSLKVWNFHMSTEEL-KLTGHGWDVKTVDWHPSKGLLASGSKDNLVKFWDPRTGTCIATLHG-HKNTI 251
    *******************************999999.9********************************************9.***** PP
   S: 184 yslsfdsng..kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfs.pnderlvsgssDgsiriWdlrsgdllktlqlhn..ssv 267
    sf++n ++l+++s+d+t +++dl++ + vr l+gh++ v++v + ++l +g+sDgs++ + l+ ll++ ++h+ +v
   Q: 252 MQASFQKNFgsNYLATVSRDSTCRVFDLRAMKDVRVLRGHEKDVNCVTWHpLYPNLLTTGGSDGSVNHYSLDEPPLLSQQKYHEkhPNV 340
    *******9778***************************************44567777788********99988888887777755333 PP
   

Organism Schizosaccharomyces pombe
Functional Description
(View)

Functional Description



     Required for 3'-end cleavage and polyadenylation of pre-mRNAs. Also involved in chromosome segregation where it has a role in chromosome attachment to the mitotic spindle.
Required for 3'-end cleavage and polyadenylation of pre-mRNAs. Also involved in chromosome segregation where it has a role in chromosome attachment to the mitotic spindle.
Protein Sequence
(Fasta)
MERAENARII QKPMTRRTVD YGSGLSKYIV NRHLRSNRYH IHVPRPNPNQ IINLYPPYEY 60
KYNNTSSLCT KYIHTSANKA RHVINVVRWT PDGRRLLTGS STGEFTLWNG LTFNFELINQ 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Spo-108163|E3,WD_repeat;UBD,Beta-Prp|Schizosaccharomyces pombe
Please wait for a moment...
Nucleotide Sequence
(Fasta)
AAACGCGCCA AATATCTATA TATTAGAATA CCATACGAAA AACGGTAAAG TTTATACTAC 60
ATTAGAAGGA ACTTTAAGTT GGTTTTATTT AAATTAAAGA TTGATTTTAT TGCTGCTAAA 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Spo-108163|E3,WD_repeat;UBD,Beta-Prp|Schizosaccharomyces pombe
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0159--Chromosome partition
KW-0181--Complete proteome
KW-0507--mRNA processing
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0005847--C:mRNA cleavage and polyadenylation specificity factor complex
GO:0000790--C:nuclear chromatin
GO:0005634--C:nucleus
GO:0007059--P:chromosome segregation
GO:0031124--P:mRNA 3'-end processing
GO:0006379--P:mRNA cleavage
GO:0006378--P:mRNA polyadenylation

KEGG spo:SPAC12G12.14c
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001064 Aegilops tauschii 40.69 4.00e-90 323.00
IUUC-Aml-001363 Ailuropoda melanoleuca 44.53 3.00e-104 371.00
IUUC-Atr-003030 Amborella trichopoda 41.94 4.00e-97 347.00
IUUC-Apl-003409 Anas platyrhynchos 44.31 4.00e-102 364.00
IUUC-Aca-004694 Anolis carolinensis 44.53 2.00e-103 369.00
IUUC-Aly-006063 Arabidopsis lyrata 44.47 1.00e-99 355.00
IUUC-Ath-006583 Arabidopsis thaliana 38.22 4.00e-96 343.00
IUUC-Ago-007805 Ashbya gossypii 39.45 2.00e-84 304.00
IUUC-Acl-008075 Aspergillus clavatus 47.91 3.00e-110 390.00
IUUC-Afl-008582 Aspergillus flavus 48.81 4.00e-106 376.00
IUUC-Afu-008817 Aspergillus fumigatus 48.35 2.00e-98 350.00
IUUC-Ani-009391 Aspergillus nidulans 45.61 6.00e-102 362.00
IUUC-Ang-009750 Aspergillus niger 49.35 1.00e-85 307.00
IUUC-Aor-010085 Aspergillus oryzae 46.86 8.00e-109 385.00
IUUC-Ate-010397 Aspergillus terreus 47.67 1.00e-109 388.00
IUUC-Ame-010741 Astyanax mexicanus 47.30 4.00e-67 248.00
IUUC-Bgr-012169 Blumeria graminis 51.73 9.00e-113 398.00
IUUC-Bta-013265 Bos taurus 44.53 5.00e-104 370.00
IUUC-Bci-013762 Botrytis cinerea 51.49 8.00e-125 438.00
IUUC-Bdi-014849 Brachypodium distachyon 42.68 7.00e-98 349.00
IUUC-Bol-015325 Brassica oleracea 44.22 2.00e-101 361.00
IUUC-Bra-017187 Brassica rapa 43.96 3.00e-101 360.00
IUUC-Cel-018378 Caenorhabditis elegans 41.16 2.00e-93 335.00
IUUC-Cja-019547 Callithrix jacchus 44.53 4.00e-104 371.00
IUUC-Cfa-020031 Canis familiaris 44.53 5.00e-104 370.00
IUUC-Cpo-021554 Cavia porcellus 45.01 1.00e-101 362.00
IUUC-Cre-022830 Chlamydomonas reinhardtii 36.34 2.00e-62 231.00
IUUC-Csa-023146 Chlorocebus sabaeus 44.28 1.00e-103 369.00
IUUC-Cho-024679 Choloepus hoffmanni 43.28 2.00e-96 345.00
IUUC-Cin-025415 Ciona intestinalis 41.46 9.00e-92 329.00
IUUC-Csv-026003 Ciona savignyi 39.16 4.00e-90 323.00
IUUC-Cgl-026391 Colletotrichum gloeosporioides 53.64 5.00e-121 426.00
IUUC-Cne-026983 Cryptococcus neoformans 43.83 2.00e-99 354.00
IUUC-Cme-027147 Cyanidioschyzon merolae 38.35 8.00e-91 325.00
IUUC-Dre-028545 Danio rerio 43.78 1.00e-102 365.00
IUUC-Dno-029677 Dasypus novemcinctus 44.53 3.00e-104 371.00
IUUC-Dse-031371 Dothistroma septosporum 47.89 5.00e-106 376.00
IUUC-Dme-031663 Drosophila melanogaster 42.60 2.00e-98 352.00
IUUC-Ete-032511 Echinops telfairi 37.31 2.00e-79 289.00
IUUC-Eca-034152 Equus caballus 44.53 5.00e-104 370.00
IUUC-Eeu-034560 Erinaceus europaeus 31.98 2.00e-28 120.00
IUUC-Fca-035820 Felis catus 44.53 5.00e-104 370.00
IUUC-Fox-037958 Fusarium oxysporum 51.49 5.00e-123 432.00
IUUC-Fso-038162 Fusarium solani 50.96 6.00e-123 432.00
IUUC-Gmo-039708 Gadus morhua 43.78 4.00e-104 370.00
IUUC-Ggr-040031 Gaeumannomyces graminis 48.63 1.00e-111 394.00
IUUC-Gga-040963 Gallus gallus 44.53 8.00e-104 370.00
IUUC-Gac-041541 Gasterosteus aculeatus 43.53 1.00e-100 359.00
IUUC-Gma-043757 Glycine max 44.39 6.00e-100 356.00
IUUC-Ggo-045564 Gorilla gorilla 44.53 5.00e-104 370.00
IUUC-Hsa-045833 Homo sapiens 44.53 4.00e-104 371.00
IUUC-Hvu-047848 Hordeum vulgare 41.16 8.00e-67 245.00
IUUC-Itr-048083 Ictidomys tridecemlineatus 44.53 5.00e-104 370.00
IUUC-Kpa-049308 Komagataella pastoris 43.96 2.00e-106 377.00
IUUC-Lch-050525 Latimeria chalumnae 44.28 2.00e-103 369.00
IUUC-Lpe-051364 Leersia perrieri 38.46 5.00e-83 300.00
IUUC-Loc-052696 Lepisosteus oculatus 44.28 1.00e-102 366.00
IUUC-Lma-052951 Leptosphaeria maculans 52.94 1.00e-120 424.00
IUUC-Laf-053653 Loxodonta africana 44.53 1.00e-103 369.00
IUUC-Mcc-055797 Macaca mulatta 44.53 4.00e-104 371.00
IUUC-Meu-056331 Macropus eugenii 46.67 3.00e-87 315.00
IUUC-Mor-057168 Magnaporthe oryzae 51.51 4.00e-123 433.00
IUUC-Mpo-057510 Magnaporthe poae 50.19 3.00e-76 276.00
IUUC-Mtr-058032 Medicago truncatula 44.39 3.00e-101 360.00
IUUC-Mla-058852 Melampsora laricipopulina 48.12 3.00e-117 413.00
IUUC-Mga-059311 Meleagris gallopavo 44.53 8.00e-104 370.00
IUUC-Mvi-060544 Microbotryum violaceum 49.00 1.00e-116 411.00
IUUC-Mmr-061143 Microcebus murinus 44.53 5.00e-104 370.00
IUUC-Mdo-061977 Monodelphis domestica 44.53 9.00e-104 370.00
IUUC-Mmu-063922 Mus musculus 44.53 6.00e-104 370.00
IUUC-Mac-064961 Musa acuminata 39.87 2.00e-102 364.00
IUUC-Mpu-066079 Mustela putorius furo 48.12 5.00e-97 347.00
IUUC-Mlu-067247 Myotis lucifugus 44.53 2.00e-104 372.00
IUUC-Nfi-068255 Neosartorya fischeri 49.73 3.00e-104 370.00
IUUC-Ncr-068909 Neurospora crassa 53.10 1.00e-126 444.00
IUUC-Nle-068994 Nomascus leucogenys 44.53 4.00e-104 371.00
IUUC-Opr-071079 Ochotona princeps 44.78 7.00e-105 373.00
IUUC-Ont-071971 Oreochromis niloticus 39.16 2.00e-101 362.00
IUUC-Oan-073135 Ornithorhynchus anatinus 47.11 3.00e-98 351.00
IUUC-Ocu-073982 Oryctolagus cuniculus 44.53 6.00e-104 370.00
IUUC-Oba-075297 Oryza barthii 38.71 2.00e-85 308.00
IUUC-Obr-076641 Oryza brachyantha 43.00 2.00e-100 357.00
IUUC-Ogl-077539 Oryza glaberrima 41.98 2.00e-69 254.00
IUUC-Ogu-078807 Oryza glumaepatula 38.71 2.00e-85 308.00
IUUC-Oin-079229 Oryza indica 42.68 4.00e-100 357.00
IUUC-Olo-080371 Oryza longistaminata 38.75 5.00e-85 306.00
IUUC-Ome-081149 Oryza meridionalis 38.46 2.00e-84 305.00
IUUC-Oni-082970 Oryza nivara 38.71 2.00e-85 308.00
IUUC-Opu-083415 Oryza punctata 38.71 4.00e-84 303.00
IUUC-Oru-085236 Oryza rufipogon 38.71 1.00e-85 308.00
IUUC-Ola-087421 Oryzias latipes 39.47 6.00e-104 369.00
IUUC-Olu-087821 Ostreococcus lucimarinus 42.45 2.00e-92 330.00
IUUC-Oga-088132 Otolemur garnettii 44.53 4.00e-104 371.00
IUUC-Oar-089513 Ovis aries 44.53 6.00e-104 370.00
IUUC-Ptr-090717 Pan troglodytes 44.53 4.00e-104 371.00
IUUC-Pan-092108 Papio anubis 44.53 4.00e-104 371.00
IUUC-Psi-093892 Pelodiscus sinensis 44.53 1.00e-103 369.00
IUUC-Pma-094561 Petromyzon marinus 44.03 1.00e-103 369.00
IUUC-Pno-094943 Phaeosphaeria nodorum 50.87 7.00e-121 425.00
IUUC-Ppa-095359 Physcomitrella patens 45.13 8.00e-105 372.00
IUUC-Pfo-096516 Poecilia formosa 43.42 4.00e-100 357.00
IUUC-Pab-097759 Pongo abelii 44.53 3.00e-104 371.00
IUUC-Pop-099553 Populus trichocarpa 44.17 3.00e-102 363.00
IUUC-Ppe-101957 Prunus persica 43.92 3.00e-102 363.00
IUUC-Pva-102918 Pteropus vampyrus 44.53 6.00e-104 370.00
IUUC-Pgr-103594 Puccinia graminis 47.94 5.00e-118 416.00
IUUC-Ptt-103879 Puccinia triticina 41.39 2.00e-101 360.00
IUUC-Pte-104419 Pyrenophora teres 51.24 1.00e-123 435.00
IUUC-Pyt-104718 Pyrenophora triticirepentis 52.85 7.00e-121 425.00
IUUC-Rno-105838 Rattus norvegicus 44.53 6.00e-104 370.00
IUUC-Sce-106331 Saccharomyces cerevisiae 43.08 3.00e-88 317.00
IUUC-Sha-107435 Sarcophilus harrisii 44.31 2.00e-102 365.00
IUUC-Sja-107796 Schizosaccharomyces japonicus 81.52 0.00e+00 761.00
IUUC-Smo-109602 Selaginella moellendorffii 42.44 7.00e-103 365.00
IUUC-Sit-109729 Setaria italica 42.68 4.00e-99 353.00
IUUC-Sly-111679 Solanum lycopersicum 40.17 8.00e-103 365.00
IUUC-Sar-113157 Sorex araneus 44.53 6.00e-104 370.00
IUUC-Sbi-114853 Sorghum bicolor 40.47 1.00e-98 352.00
IUUC-Sre-115085 Sporisorium reilianum 43.27 2.00e-100 357.00
IUUC-Ssc-116286 Sus scrofa 44.17 5.00e-102 364.00
IUUC-Tgu-117219 Taeniopygia guttata 44.53 2.00e-103 369.00
IUUC-Tru-117550 Takifugu rubripes 43.78 1.00e-102 365.00
IUUC-Tsy-119294 Tarsius syrichta 44.53 3.00e-104 371.00
IUUC-Tni-120561 Tetraodon nigroviridis 44.03 1.00e-102 365.00
IUUC-Tca-121347 Theobroma cacao 41.06 1.00e-102 365.00
IUUC-Tre-122018 Trichoderma reesei 54.84 1.00e-124 438.00
IUUC-Tvi-122413 Trichoderma virens 54.30 5.00e-122 429.00
IUUC-Tae-123191 Triticum aestivum 42.43 2.00e-97 347.00
IUUC-Tme-127077 Tuber melanosporum 58.64 3.00e-137 479.00
IUUC-Tbe-127744 Tupaia belangeri 39.00 2.00e-49 189.00
IUUC-Ttr-128777 Tursiops truncatus 37.83 2.00e-74 272.00
IUUC-Uma-129568 Ustilago maydis 41.48 9.00e-96 342.00
IUUC-Vda-129834 Verticillium dahliae 51.74 5.00e-122 429.00
IUUC-Vvi-131360 Vitis vinifera 43.67 8.00e-102 362.00
IUUC-Xtr-132630 Xenopus tropicalis 44.03 5.00e-102 364.00
IUUC-Xma-133665 Xiphophorus maculatus 43.78 3.00e-102 364.00
IUUC-Yli-134556 Yarrowia lipolytica 41.97 2.00e-96 344.00
IUUC-Zma-135787 Zea mays 42.57 5.00e-100 356.00
Created Date 25-Jun-2017

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