iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Kpa-049304

Ensembl Protein ID

CAY67251

UniProt Accession

C4QVH8; C4QVH8_KOMPG

Genbank Protein ID

CAY67251.1

Protein Name

Ribosome biogenesis protein YTM1

Genbank Nucleotide ID

FN392319

Gene Name

YTM1; PAS_chr1-3_0188

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PAS_chr1-3_0188	CAY67251	CAY67251

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.70e-35	117.7	370	407

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd.tllvsGsdDgtikvWDlrtgvl 35
           gHt+ v +la   ++  ++vsGs+Dgt kvWD+r +++
   Q: 370  GHTNFVVSLAPspNNeYMFVSGSHDGTSKVWDIRANKS 407
           799999999999755799**************998765 PP

Organism

Komagataella pastoris

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MSESQEQIKI RFITRDEDET IHVSENPLYV PVSLKRYGLS EIVNHLIGHD SPIPFDFLIN 60
GTLLKTSLEE YLKSRELSTE AFLTLEYSRA VLPPDFLASF NNEDWISSVD TLSSDPKLAT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCCGAGT CACAAGAGCA AATTAAGATC CGGTTCATTA CCAGAGACGA GGATGAGACA 60
ATCCATGTTT CGGAAAATCC ATTGTATGTT CCCGTTTCCC TGAAAAGATA CGGTCTTTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000790--C:nuclear chromatin
GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0051276--P:chromosome organization
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

ppa:PAS_chr1-3_0188

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	27.80	1.00e-42	164.00
IUUC-Aml-001997	Ailuropoda melanoleuca	30.41	6.00e-39	152.00
IUUC-Atr-002544	Amborella trichopoda	27.31	1.00e-41	161.00
IUUC-Apl-003981	Anas platyrhynchos	31.75	7.00e-45	172.00
IUUC-Aca-004370	Anolis carolinensis	31.26	1.00e-48	185.00
IUUC-Aly-006455	Arabidopsis lyrata	29.96	5.00e-46	176.00
IUUC-Ath-006669	Arabidopsis thaliana	30.60	5.00e-42	162.00
IUUC-Ago-007864	Ashbya gossypii	55.82	1.00e-146	510.00
IUUC-Acl-008177	Aspergillus clavatus	43.69	2.00e-104	370.00
IUUC-Afl-008617	Aspergillus flavus	44.58	6.00e-106	375.00
IUUC-Afu-008752	Aspergillus fumigatus	44.68	1.00e-100	357.00
IUUC-Ani-009136	Aspergillus nidulans	46.38	2.00e-103	367.00
IUUC-Ang-009701	Aspergillus niger	44.89	3.00e-99	353.00
IUUC-Aor-009884	Aspergillus oryzae	44.79	9.00e-107	378.00
IUUC-Ate-010472	Aspergillus terreus	44.79	3.00e-63	233.00
IUUC-Ame-011432	Astyanax mexicanus	29.91	4.00e-46	176.00
IUUC-Bgr-012218	Blumeria graminis	41.76	6.00e-90	322.00
IUUC-Bta-012829	Bos taurus	29.56	1.00e-40	158.00
IUUC-Bci-013953	Botrytis cinerea	39.13	1.00e-92	331.00
IUUC-Bdi-014351	Brachypodium distachyon	26.61	5.00e-40	156.00
IUUC-Bol-016190	Brassica oleracea	28.91	1.00e-43	167.00
IUUC-Bra-016988	Brassica rapa	27.57	5.00e-42	162.00
IUUC-Cel-018569	Caenorhabditis elegans	27.57	2.00e-24	104.00
IUUC-Cja-019468	Callithrix jacchus	29.56	5.00e-38	149.00
IUUC-Cfa-020471	Canis familiaris	29.11	8.00e-37	145.00
IUUC-Cpo-022260	Cavia porcellus	29.33	5.00e-39	152.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	31.55	3.00e-45	173.00
IUUC-Csa-023989	Chlorocebus sabaeus	29.33	2.00e-38	151.00
IUUC-Cho-024426	Choloepus hoffmanni	30.77	8.00e-28	115.00
IUUC-Cin-025789	Ciona intestinalis	26.61	5.00e-36	142.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	44.13	1.00e-26	110.00
IUUC-Cne-027063	Cryptococcus neoformans	25.96	9.00e-35	139.00
IUUC-Dre-027907	Danio rerio	30.38	5.00e-48	182.00
IUUC-Dno-029225	Dasypus novemcinctus	29.52	1.00e-39	154.00
IUUC-Dor-031082	Dipodomys ordii	30.58	1.00e-19	88.60
IUUC-Dse-031308	Dothistroma septosporum	41.83	1.00e-93	334.00
IUUC-Dme-032189	Drosophila melanogaster	26.71	2.00e-37	147.00
IUUC-Ete-032247	Echinops telfairi	28.92	5.00e-35	139.00
IUUC-Eca-034285	Equus caballus	29.56	7.00e-40	155.00
IUUC-Eeu-035322	Erinaceus europaeus	28.12	7.00e-33	132.00
IUUC-Fca-036114	Felis catus	30.22	1.00e-40	158.00
IUUC-Fal-036891	Ficedula albicollis	31.05	4.00e-38	149.00
IUUC-Fox-037965	Fusarium oxysporum	40.21	1.00e-89	321.00
IUUC-Fso-038244	Fusarium solani	40.71	4.00e-88	316.00
IUUC-Gmo-039040	Gadus morhua	30.27	3.00e-48	183.00
IUUC-Ggr-040093	Gaeumannomyces graminis	34.47	1.00e-70	258.00
IUUC-Gga-040610	Gallus gallus	30.89	5.00e-47	179.00
IUUC-Gac-042117	Gasterosteus aculeatus	31.54	2.00e-49	187.00
IUUC-Gma-043756	Glycine max	29.04	5.00e-48	182.00
IUUC-Ggo-045179	Gorilla gorilla	29.56	1.00e-39	155.00
IUUC-Hsa-046114	Homo sapiens	29.33	1.00e-38	151.00
IUUC-Hvu-047331	Hordeum vulgare	27.23	4.00e-36	143.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	29.56	5.00e-40	156.00
IUUC-Lch-050655	Latimeria chalumnae	29.64	1.00e-30	125.00
IUUC-Lpe-051675	Leersia perrieri	29.51	1.00e-45	175.00
IUUC-Loc-052868	Lepisosteus oculatus	30.94	2.00e-45	174.00
IUUC-Lma-053258	Leptosphaeria maculans	40.75	2.00e-91	329.00
IUUC-Laf-053993	Loxodonta africana	30.00	1.00e-40	158.00
IUUC-Mcc-055128	Macaca mulatta	25.22	3.00e-20	90.10
IUUC-Meu-056501	Macropus eugenii	30.70	1.00e-35	141.00
IUUC-Mor-057114	Magnaporthe oryzae	38.45	8.00e-83	298.00
IUUC-Mpo-057463	Magnaporthe poae	36.32	4.00e-33	132.00
IUUC-Mtr-058367	Medicago truncatula	30.15	1.00e-44	171.00
IUUC-Mla-059107	Melampsora laricipopulina	29.81	3.00e-45	174.00
IUUC-Mga-059745	Meleagris gallopavo	30.88	2.00e-44	171.00
IUUC-Mvi-060362	Microbotryum violaceum	30.34	1.00e-47	182.00
IUUC-Mdo-062257	Monodelphis domestica	30.60	4.00e-45	173.00
IUUC-Mmu-063546	Mus musculus	29.15	6.00e-40	155.00
IUUC-Mac-065540	Musa acuminata	30.43	1.00e-43	168.00
IUUC-Mpu-066284	Mustela putorius furo	29.78	2.00e-40	158.00
IUUC-Mlu-067241	Myotis lucifugus	28.89	4.00e-39	153.00
IUUC-Nfi-068260	Neosartorya fischeri	44.68	3.00e-103	366.00
IUUC-Ncr-068719	Neurospora crassa	40.97	7.00e-89	318.00
IUUC-Nle-068981	Nomascus leucogenys	29.11	1.00e-38	151.00
IUUC-Opr-071218	Ochotona princeps	27.78	1.00e-36	145.00
IUUC-Ont-071646	Oreochromis niloticus	30.89	5.00e-46	176.00
IUUC-Oan-073453	Ornithorhynchus anatinus	30.67	1.00e-49	187.00
IUUC-Ocu-074008	Oryctolagus cuniculus	30.22	2.00e-41	160.00
IUUC-Oba-075712	Oryza barthii	26.20	2.00e-34	138.00
IUUC-Obr-076721	Oryza brachyantha	28.97	9.00e-45	172.00
IUUC-Ogl-077229	Oryza glaberrima	29.11	2.00e-46	177.00
IUUC-Ogu-078977	Oryza glumaepatula	26.21	2.00e-34	137.00
IUUC-Oin-079683	Oryza indica	28.94	4.00e-46	176.00
IUUC-Olo-080291	Oryza longistaminata	28.17	2.00e-25	107.00
IUUC-Ome-081834	Oryza meridionalis	29.46	5.00e-46	176.00
IUUC-Oni-082507	Oryza nivara	28.11	2.00e-40	157.00
IUUC-Opu-083396	Oryza punctata	28.94	3.00e-45	174.00
IUUC-Oru-085220	Oryza rufipogon	28.11	6.00e-40	155.00
IUUC-Osa-085767	Oryza sativa	28.94	4.00e-46	176.00
IUUC-Ola-087420	Oryzias latipes	29.37	4.00e-46	176.00
IUUC-Olu-087740	Ostreococcus lucimarinus	28.26	1.00e-40	158.00
IUUC-Oga-088264	Otolemur garnettii	29.11	8.00e-39	152.00
IUUC-Oar-089335	Ovis aries	29.56	2.00e-40	157.00
IUUC-Ptr-091320	Pan troglodytes	29.33	1.00e-38	151.00
IUUC-Pan-092833	Papio anubis	29.33	9.00e-39	152.00
IUUC-Psi-093504	Pelodiscus sinensis	30.22	7.00e-44	169.00
IUUC-Pma-094189	Petromyzon marinus	28.48	3.00e-41	160.00
IUUC-Pno-094929	Phaeosphaeria nodorum	40.50	2.00e-92	330.00
IUUC-Ppa-095429	Physcomitrella patens	30.40	4.00e-54	202.00
IUUC-Pfo-096337	Poecilia formosa	29.82	1.00e-47	181.00
IUUC-Pab-097571	Pongo abelii	29.11	2.00e-38	150.00
IUUC-Pop-099977	Populus trichocarpa	29.17	4.00e-44	169.00
IUUC-Pca-100394	Procavia capensis	28.34	9.00e-33	132.00
IUUC-Ppe-101848	Prunus persica	30.75	3.00e-49	187.00
IUUC-Pva-102921	Pteropus vampyrus	30.42	1.00e-18	85.10
IUUC-Pgr-103637	Puccinia graminis	31.66	3.00e-50	190.00
IUUC-Ptt-103781	Puccinia triticina	32.30	5.00e-53	199.00
IUUC-Pte-104135	Pyrenophora teres	40.59	3.00e-86	311.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	40.25	6.00e-89	318.00
IUUC-Rno-105114	Rattus norvegicus	30.00	1.00e-40	158.00
IUUC-Sce-106401	Saccharomyces cerevisiae	56.96	2.00e-151	526.00
IUUC-Sha-107122	Sarcophilus harrisii	29.62	2.00e-39	154.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	40.80	1.00e-90	324.00
IUUC-Spo-108134	Schizosaccharomyces pombe	42.47	5.00e-93	332.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	39.75	8.00e-96	342.00
IUUC-Smo-108761	Selaginella moellendorffii	30.04	3.00e-49	186.00
IUUC-Sit-110311	Setaria italica	28.11	2.00e-42	164.00
IUUC-Sly-111023	Solanum lycopersicum	27.91	3.00e-43	167.00
IUUC-Stu-112169	Solanum tuberosum	30.56	3.00e-47	180.00
IUUC-Sar-113596	Sorex araneus	29.33	1.00e-25	108.00
IUUC-Sbi-114193	Sorghum bicolor	28.42	2.00e-41	160.00
IUUC-Sre-115002	Sporisorium reilianum	26.53	1.00e-29	122.00
IUUC-Ssc-116066	Sus scrofa	29.56	1.00e-39	154.00
IUUC-Tgu-117048	Taeniopygia guttata	30.75	3.00e-43	167.00
IUUC-Tni-119820	Tetraodon nigroviridis	29.78	6.00e-45	172.00
IUUC-Tca-121605	Theobroma cacao	29.89	5.00e-44	169.00
IUUC-Tre-121947	Trichoderma reesei	41.82	7.00e-91	325.00
IUUC-Tvi-122481	Trichoderma virens	42.03	4.00e-92	329.00
IUUC-Tae-123504	Triticum aestivum	28.11	2.00e-42	164.00
IUUC-Tur-126586	Triticum urartu	28.31	6.00e-37	145.00
IUUC-Tme-126900	Tuber melanosporum	44.77	4.00e-106	375.00
IUUC-Ttr-129041	Tursiops truncatus	24.66	6.00e-24	102.00
IUUC-Uma-129628	Ustilago maydis	26.44	1.00e-22	99.00
IUUC-Vpa-130260	Vicugna pacos	29.11	7.00e-40	155.00
IUUC-Vvi-131009	Vitis vinifera	30.92	8.00e-50	188.00
IUUC-Xtr-132083	Xenopus tropicalis	31.19	1.00e-47	181.00
IUUC-Xma-133094	Xiphophorus maculatus	30.22	7.00e-49	185.00
IUUC-Yli-134531	Yarrowia lipolytica	41.42	7.00e-92	328.00
IUUC-Zma-135509	Zea mays	29.07	3.00e-45	173.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence