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Tag Content
UUCD2 ID IUUC-Gma-042910
UUCD1 version UUC-GlM-02890
Ensembl Protein ID GLYMA08G22140.1
UniProt Accession I1KV92; I1KV92_SOYBN
Genbank Protein ID KRH44383.1
Protein Name Coatomer subunit beta'
Genbank Nucleotide ID CM000841
Gene Name LOC100818132; GLYMA_08G207300
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
GLYMA08G22140 GLYMA08G22140.1 GLYMA08G22140.1
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.40e-35 121.3 184 224
UBD/Beta-Prp 7.10e-68 230.6 14 291
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 2    Htdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           H+ +v+c+++    d ++l++GsdD+t kvWD+ t  ++++
   Q: 184  HQKGVNCVDYftgGDkPYLITGSDDHTAKVWDYQTKSCVQT 224
           999*****966*9778*******************999986 PP
   

   UBD/Beta-Prp
   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsf 102
           +++++++v+ +p +++++++ ++gt+ +w+++++++ +s++  e +v++ kf+ ++++ v g++D++i+v++++t + v ++++h+d+++++++
   Q: 14   RSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAV 107
           5678999*************************************************************************************** PP
   S: 103  spsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvysls..fdsngk 193
           +p+  +++s s+d  i++wd+e+g+   ++++gh++ v+ v+++p++ n ++s+slDrt+++W+l + +   tl   h++ v++++     +++
   Q: 108  HPTLPYVLSSSDDMLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDtNTFASASLDRTIKIWNLGSPDPNFTLDA-HQKGVNCVDyfTGGDKP 200
           *************************9999*********************************************98.*********6444555* PP
   S: 194  elvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgs 284
           +l++gs+d t k+wd+qt++cv+tl+ght nv+ v f+p+  ++++gs+Dg++riW +++  l +tl+++ ++v+++ +l+ +++v++  +
   Q: 201  YLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYSLERVWAIGYLKGSRRVVIGYD 291
           *******************************************************************************998888875443 PP
   
Organism Glycine max
Functional Description
(View)

Functional Description


     The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
 The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
Protein Sequence
(Fasta)
MPLRLEIKRK LAQRSERVKS VDLHPTEPWI LASLYSGTVC IWNYQSQTMA KSFEVTELPV 60
RSAKFIARKQ WVVAGADDMF IRVYNYNTMD KVKVFEAHTD YIRCVAVHPT LPYVLSSSDD 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Gma-042910|E3,WD_repeat;UBD,Beta-Prp|Glycine max
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGTGTATGA TTAGATCTAC GCCGTCCATT ACATCGTCTT CATTTCCCAG TGGCAATATC 60
GTAAATCCGT GCCTTAACTG CAACGCAGCA TTCCCCTTTG TTTCCCTTCG ATCATCATCA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Gma-042910|E3,WD_repeat;UBD,Beta-Prp|Glycine max
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat
Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF04053--Coatomer_WDAD
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0000139--C:Golgi membrane
GO:0005198--F:structural molecule activity
GO:0006888--P:ER to Golgi vesicle-mediated transport
GO:0006891--P:intra-Golgi vesicle-mediated transport
GO:0006886--P:intracellular protein transport
GO:0006890--P:retrograde vesicle-mediated transport, Golgi to ER
KEGG gmx:100818132
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-002154 Ailuropoda melanoleuca 62.42 0.00e+00 1115.00
IUUC-Atr-003090 Amborella trichopoda 81.91 0.00e+00 1528.00
IUUC-Ame-010922 Astyanax mexicanus 56.90 0.00e+00 973.00
IUUC-Cel-018387 Caenorhabditis elegans 54.18 0.00e+00 978.00
IUUC-Cja-019145 Callithrix jacchus 62.35 0.00e+00 1116.00
IUUC-Cfa-020564 Canis familiaris 62.47 0.00e+00 1117.00
IUUC-Cpo-022201 Cavia porcellus 62.42 0.00e+00 1115.00
IUUC-Cre-022938 Chlamydomonas reinhardtii 66.43 0.00e+00 1120.00
IUUC-Cin-025681 Ciona intestinalis 59.44 0.00e+00 999.00
IUUC-Csv-026012 Ciona savignyi 58.82 0.00e+00 976.00
IUUC-Dre-027846 Danio rerio 62.76 0.00e+00 1122.00
IUUC-Dor-030462 Dipodomys ordii 59.85 0.00e+00 857.00
IUUC-Dme-031791 Drosophila melanogaster 57.48 0.00e+00 1015.00
IUUC-Eca-034180 Equus caballus 60.90 0.00e+00 1072.00
IUUC-Eeu-035086 Erinaceus europaeus 51.30 6.00e-126 445.00
IUUC-Fca-036265 Felis catus 60.91 0.00e+00 1118.00
IUUC-Fso-038268 Fusarium solani 53.78 0.00e+00 868.00
IUUC-Gmo-039046 Gadus morhua 62.03 0.00e+00 1108.00
IUUC-Ggo-044984 Gorilla gorilla 62.35 0.00e+00 1115.00
IUUC-Hsa-046698 Homo sapiens 62.35 0.00e+00 1115.00
IUUC-Itr-048212 Ictidomys tridecemlineatus 62.42 0.00e+00 1114.00
IUUC-Lch-050473 Latimeria chalumnae 62.64 0.00e+00 1118.00
IUUC-Loc-052675 Lepisosteus oculatus 61.55 0.00e+00 1125.00
IUUC-Laf-053757 Loxodonta africana 62.39 0.00e+00 1111.00
IUUC-Mcc-054859 Macaca mulatta 62.35 0.00e+00 1116.00
IUUC-Meu-056174 Macropus eugenii 54.06 3.00e-109 389.00
IUUC-Mtr-058310 Medicago truncatula 92.62 0.00e+00 1730.00
IUUC-Mvi-060240 Microbotryum violaceum 50.67 0.00e+00 906.00
IUUC-Mmr-061261 Microcebus murinus 62.47 0.00e+00 1118.00
IUUC-Mdo-062076 Monodelphis domestica 62.71 0.00e+00 1123.00
IUUC-Mmu-063324 Mus musculus 62.47 0.00e+00 1119.00
IUUC-Mac-064636 Musa acuminata 85.46 0.00e+00 1612.00
IUUC-Mpu-065961 Mustela putorius furo 62.47 0.00e+00 1116.00
IUUC-Mlu-067059 Myotis lucifugus 61.62 0.00e+00 1103.00
IUUC-Nle-069034 Nomascus leucogenys 62.35 0.00e+00 1115.00
IUUC-Ont-071563 Oreochromis niloticus 62.39 0.00e+00 1116.00
IUUC-Oan-073416 Ornithorhynchus anatinus 61.73 0.00e+00 1056.00
IUUC-Ocu-074522 Oryctolagus cuniculus 62.47 0.00e+00 1113.00
IUUC-Obr-076201 Oryza brachyantha 83.57 0.00e+00 1561.00
IUUC-Ome-081762 Oryza meridionalis 79.86 0.00e+00 1433.00
IUUC-Ola-087245 Oryzias latipes 61.99 0.00e+00 1110.00
IUUC-Oga-088163 Otolemur garnettii 60.17 0.00e+00 1061.00
IUUC-Oar-089842 Ovis aries 62.47 0.00e+00 1118.00
IUUC-Ptr-090501 Pan troglodytes 62.35 0.00e+00 1115.00
IUUC-Pan-092011 Papio anubis 62.35 0.00e+00 1116.00
IUUC-Psi-093308 Pelodiscus sinensis 62.83 0.00e+00 1122.00
IUUC-Pma-094695 Petromyzon marinus 58.82 0.00e+00 986.00
IUUC-Ppa-095911 Physcomitrella patens 78.15 0.00e+00 1448.00
IUUC-Pfo-096587 Poecilia formosa 62.15 0.00e+00 1114.00
IUUC-Pab-097926 Pongo abelii 60.12 0.00e+00 1046.00
IUUC-Pop-099634 Populus trichocarpa 90.04 0.00e+00 1665.00
IUUC-Pca-100965 Procavia capensis 61.45 0.00e+00 1078.00
IUUC-Pva-102451 Pteropus vampyrus 58.80 0.00e+00 851.00
IUUC-Sce-106269 Saccharomyces cerevisiae 47.55 0.00e+00 756.00
IUUC-Sha-106905 Sarcophilus harrisii 62.71 0.00e+00 1122.00
IUUC-Sja-107838 Schizosaccharomyces japonicus 46.65 0.00e+00 778.00
IUUC-Spo-108299 Schizosaccharomyces pombe 46.72 0.00e+00 803.00
IUUC-Sit-110239 Setaria italica 84.42 0.00e+00 1598.00
IUUC-Sly-111211 Solanum lycopersicum 85.65 0.00e+00 1563.00
IUUC-Sar-113472 Sorex araneus 57.44 0.00e+00 764.00
IUUC-Sre-115040 Sporisorium reilianum 52.70 0.00e+00 905.00
IUUC-Ssc-115593 Sus scrofa 62.35 0.00e+00 1116.00
IUUC-Tru-118025 Takifugu rubripes 62.20 0.00e+00 1115.00
IUUC-Tsy-118824 Tarsius syrichta 58.57 0.00e+00 794.00
IUUC-Tvi-122546 Trichoderma virens 52.33 0.00e+00 870.00
IUUC-Tme-127041 Tuber melanosporum 53.55 0.00e+00 912.00
IUUC-Tbe-127770 Tupaia belangeri 60.94 0.00e+00 891.00
IUUC-Ttr-129294 Tursiops truncatus 62.23 0.00e+00 1114.00
IUUC-Vpa-130037 Vicugna pacos 51.62 1.00e-129 457.00
IUUC-Vvi-131689 Vitis vinifera 92.93 0.00e+00 1662.00
IUUC-Xtr-132633 Xenopus tropicalis 61.10 0.00e+00 1118.00
IUUC-Xma-133347 Xiphophorus maculatus 62.39 0.00e+00 1117.00
Created Date 25-Jun-2017

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