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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Rno-105461
UUCD1 version UUC-RaN-00653
Ensembl Protein ID ENSRNOP00000002395.7
UniProt Accession A0A140TA93; A0A140TA93_RAT
Genbank Protein ID ENSRNOP00000002395
Protein Name E3 ubiquitin-protein ligase RNF168; RING finger protein 168; RING-type E3 ubiquitin transferase RNF168
Genbank Nucleotide ID AABR07034438
Gene Name Rnf168; RNF168
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000043345.3 ENSRNOT00000002395.7 ENSRNOP00000002395.7
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
TRANSFACRAID2
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
UBD/Alpha-Helix/MIU 64.29 3.00e-161 566.00 IUUC-Hsa-046424
UBD/Alpha-Helix/UMI 64.29 3.00e-161 566.00 IUUC-Hsa-046424
E3 activity/RING/RING 64.29 3.00e-161 566.00 IUUC-Hsa-046424
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Rattus norvegicus
Functional Description
(View)

Functional Description



     E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
Protein Sequence
(Fasta)
MKMAAPKNSI PSLAECQCGI CMEILVEPVT LPCNHTLCNP CFQSTVEKAN LCCPFCRRRV 60
SSWTRYHTRR NSLVNTDLWE IIQKHYAKEC KLRISGQESK EIVDEYQPVR LLSKPGELRR 120
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Protein Fasta Sequence



>IUUC-Rno-105461|UBD,MIU;UBD,UMI;E3,RING|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
AGGCCACATT AGCATATGAA GATGGCTGCA CCTAAAAACT CCATCCCTTC CTTAGCGGAA 60
TGTCAGTGCG GGATCTGCAT GGAAATCCTC GTAGAGCCTG TTACCCTACC TTGCAACCAC 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Rno-105461|UBD,MIU;UBD,UMI;E3,RING|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0156--Chromatin regulator
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0808--Transferase
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR034725--RNF168
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005829--C:cytosol
GO:0005654--C:nucleoplasm
GO:0043234--C:protein complex
GO:0035861--C:site of double-strand break
GO:0000151--C:ubiquitin ligase complex
GO:0031491--F:nucleosome binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0006302--P:double-strand break repair
GO:0070535--P:histone H2A K63-linked ubiquitination
GO:0035518--P:histone H2A monoubiquitination
GO:0036351--P:histone H2A-K13 ubiquitination
GO:0036352--P:histone H2A-K15 ubiquitination
GO:0034244--P:negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045739--P:positive regulation of DNA repair
GO:0010212--P:response to ionizing radiation
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG rno:690043
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001573 Ailuropoda melanoleuca 64.96 3.00e-167 581.00
IUUC-Atr-002992 Amborella trichopoda 38.89 4.00e-10 58.90
IUUC-Apl-003963 Anas platyrhynchos 43.87 3.00e-74 272.00
IUUC-Aca-004420 Anolis carolinensis 68.31 9.00e-47 181.00
IUUC-Ath-007019 Arabidopsis thaliana 41.33 6.00e-10 60.10
IUUC-Ame-011521 Astyanax mexicanus 48.15 5.00e-38 152.00
IUUC-Bta-013002 Bos taurus 62.70 9.00e-161 560.00
IUUC-Bol-016180 Brassica oleracea 40.00 5.00e-10 58.50
IUUC-Bra-017905 Brassica rapa 40.00 5.00e-10 58.50
IUUC-Cja-019945 Callithrix jacchus 62.30 2.00e-164 572.00
IUUC-Cfa-020533 Canis familiaris 65.03 6.00e-169 587.00
IUUC-Cpo-021643 Cavia porcellus 53.30 7.00e-114 404.00
IUUC-Csa-023638 Chlorocebus sabaeus 63.40 2.00e-171 595.00
IUUC-Cho-024319 Choloepus hoffmanni 62.98 2.00e-151 529.00
IUUC-Dre-028519 Danio rerio 42.41 9.00e-34 137.00
IUUC-Dno-029294 Dasypus novemcinctus 64.39 4.00e-164 571.00
IUUC-Ete-032714 Echinops telfairi 42.46 4.00e-57 215.00
IUUC-Eca-033343 Equus caballus 67.88 1.00e-180 625.00
IUUC-Eeu-034633 Erinaceus europaeus 36.60 7.00e-13 68.20
IUUC-Fca-036251 Felis catus 63.68 3.00e-169 588.00
IUUC-Fal-037048 Ficedula albicollis 43.22 4.00e-76 278.00
IUUC-Gmo-039400 Gadus morhua 44.35 8.00e-30 122.00
IUUC-Gga-040444 Gallus gallus 39.30 5.00e-72 265.00
IUUC-Gac-041735 Gasterosteus aculeatus 49.16 4.00e-39 154.00
IUUC-Gma-044332 Glycine max 36.17 3.00e-12 65.90
IUUC-Ggo-044940 Gorilla gorilla 55.25 1.00e-99 357.00
IUUC-Hsa-046424 Homo sapiens 64.50 4.00e-165 574.00
IUUC-Itr-048965 Ictidomys tridecemlineatus 65.02 2.00e-157 549.00
IUUC-Lch-050649 Latimeria chalumnae 39.11 6.00e-51 195.00
IUUC-Loc-051847 Lepisosteus oculatus 34.87 3.00e-51 196.00
IUUC-Laf-053938 Loxodonta africana 60.31 9.00e-166 577.00
IUUC-Mcc-055360 Macaca mulatta 63.80 7.00e-167 580.00
IUUC-Meu-056684 Macropus eugenii 46.34 4.00e-99 355.00
IUUC-Mtr-058007 Medicago truncatula 39.24 6.00e-12 65.10
IUUC-Mga-059699 Meleagris gallopavo 41.49 4.00e-75 275.00
IUUC-Mmr-060779 Microcebus murinus 65.15 2.00e-180 625.00
IUUC-Mdo-062225 Monodelphis domestica 48.02 7.00e-103 367.00
IUUC-Mmu-064239 Mus musculus 82.89 0.00e+00 808.00
IUUC-Mpu-066141 Mustela putorius furo 66.20 9.00e-177 613.00
IUUC-Mlu-067945 Myotis lucifugus 63.99 2.00e-170 592.00
IUUC-Nle-069769 Nomascus leucogenys 63.94 4.00e-166 577.00
IUUC-Opr-070905 Ochotona princeps 54.10 5.00e-133 468.00
IUUC-Ont-071477 Oreochromis niloticus 51.45 2.00e-35 143.00
IUUC-Oan-073587 Ornithorhynchus anatinus 66.93 2.00e-47 181.00
IUUC-Ocu-073832 Oryctolagus cuniculus 60.28 1.00e-150 526.00
IUUC-Ola-086478 Oryzias latipes 47.66 2.00e-32 131.00
IUUC-Oga-088318 Otolemur garnettii 63.70 1.00e-168 586.00
IUUC-Oar-089647 Ovis aries 61.82 2.00e-158 551.00
IUUC-Ptr-090516 Pan troglodytes 64.45 2.00e-169 588.00
IUUC-Pan-092302 Papio anubis 63.13 9.00e-166 576.00
IUUC-Psi-093604 Pelodiscus sinensis 40.13 9.00e-77 281.00
IUUC-Pfo-096441 Poecilia formosa 48.87 6.00e-36 145.00
IUUC-Pab-097729 Pongo abelii 63.94 4.00e-165 574.00
IUUC-Pca-100552 Procavia capensis 48.30 2.00e-80 293.00
IUUC-Pva-102780 Pteropus vampyrus 66.37 8.00e-178 616.00
IUUC-Sha-106809 Sarcophilus harrisii 49.83 1.00e-119 423.00
IUUC-Sly-111317 Solanum lycopersicum 32.41 5.00e-15 75.50
IUUC-Stu-112783 Solanum tuberosum 34.58 1.00e-13 70.90
IUUC-Sar-113579 Sorex araneus 53.16 9.00e-128 450.00
IUUC-Tgu-117187 Taeniopygia guttata 65.61 3.00e-53 201.00
IUUC-Tru-118182 Takifugu rubripes 49.30 4.00e-32 132.00
IUUC-Tsy-119217 Tarsius syrichta 47.93 1.00e-44 173.00
IUUC-Tni-120205 Tetraodon nigroviridis 48.34 2.00e-39 156.00
IUUC-Tca-121416 Theobroma cacao 39.24 6.00e-12 65.10
IUUC-Tvi-122557 Trichoderma virens 30.49 3.00e-05 43.50
IUUC-Tbe-127622 Tupaia belangeri 63.73 3.00e-178 618.00
IUUC-Ttr-128988 Tursiops truncatus 67.19 2.00e-177 615.00
IUUC-Vpa-130302 Vicugna pacos 54.39 4.00e-88 318.00
IUUC-Vvi-131424 Vitis vinifera 37.97 3.00e-10 59.30
Created Date 25-Jun-2017

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