iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Lch-050074

Ensembl Protein ID

ENSLACP00000018534.1

UniProt Accession

H3B9G3; H3B9G3_LATCH

Genbank Protein ID

ENSLACP00000018534

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AFYH01057131

Gene Name

PRPF4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSLACG00000016317.1	ENSLACT00000018667.1	ENSLACP00000018534.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.30e-35	119.3	406	443
UBD/Beta-Prp	1.00e-56	192.6	328	520

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           gH  ++++l+f ++  ++++Gs+D+t+k+WDlr+ ++ 
   Q: 406  GHLKEIYGLSFsPNgYHIATGSGDNTCKIWDLRQRRCS 443
           7999********77799****************99885 PP

UBD/Beta-Prp

   S: 14   tcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsf 102
             v+++p++++l t++ d++ ++wd++ +  +   +gh+++v++++f+pdg++  tg+ D++++vwdl+tg c++ l+gh ++++ lsf
   Q: 328  ARVAWHPSGRFLGTTCFDHSWRLWDLEAQEEILHQEGHSKGVYDITFHPDGSLAGTGGLDAFARVWDLRTGRCIMFLEGHLKEIYGLSF 416
           45899************************************************************************************ PP
   S: 103  spsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfds 190
           sp+g+++++Gs d+t ++wdl+++ c++ t   h+ +v++v+++p+    l +G++D+t ++W  +  + l+tl g h+++v  l++++
   Q: 417  SPNGYHIATGSGDNTCKIWDLRQRRCSY-TIPAHQNLVSGVKFQPSVgHFLLTGAYDNTAKIWTHPGWSPLKTLAG-HEGKVMGLDISQ 503
           ****************************.999*************999**************************99.************ PP
   S: 191  ngkelvsgsldgtvklw 207
           +g+ +v++s+d+t klw
   Q: 504  DGQLIVTCSYDRTFKLW 520
           ***************** PP

Organism

Latimeria chalumnae

Protein Sequence
(Fasta)

QDEFRCFCTT EREKMSDDED IPIVKKARIY YGSLEEKERE RLTRGESGLM GKDGVKAGIE 60
AGHINISSGE GFEIEDHISE RQAEVLAEFE RRKRARQINV STDDAEVKAC LRALGEPITL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAAGACGAGT TTCGGTGTTT TTGTACTACA GAAAGAGAAA AGGAGAGAGG AAGGAAACCG 60
AGTTAACGAG AAATAAAGGG TAAACCCGAG GGAAGGGGGT TAATATTAAT GGAACTTGTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR014906--PRP4-like
IPR027295--Quinoprotein_ADH-like_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08799--PRP4
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00500--SFM
SM00320--WD40

Gene Ontology

GO:0043009--P:chordate embryonic development
GO:0060041--P:retina development in camera-type eye

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000771	Aegilops tauschii	43.26	2.00e-91	329.00
IUUC-Aml-001737	Ailuropoda melanoleuca	81.66	0.00e+00	832.00
IUUC-Atr-002828	Amborella trichopoda	39.20	6.00e-90	324.00
IUUC-Apl-003723	Anas platyrhynchos	79.49	0.00e+00	829.00
IUUC-Aca-004972	Anolis carolinensis	79.11	0.00e+00	782.00
IUUC-Aly-006531	Arabidopsis lyrata	41.61	2.00e-84	306.00
IUUC-Ath-007367	Arabidopsis thaliana	41.72	6.00e-98	351.00
IUUC-Ago-007893	Ashbya gossypii	39.84	1.00e-46	180.00
IUUC-Acl-008236	Aspergillus clavatus	36.71	4.00e-75	275.00
IUUC-Afl-008522	Aspergillus flavus	37.78	4.00e-85	308.00
IUUC-Afu-008904	Aspergillus fumigatus	37.38	2.00e-80	292.00
IUUC-Ani-009198	Aspergillus nidulans	37.34	3.00e-84	305.00
IUUC-Ang-009662	Aspergillus niger	39.04	9.00e-85	307.00
IUUC-Aor-009881	Aspergillus oryzae	37.78	3.00e-85	308.00
IUUC-Ate-010333	Aspergillus terreus	36.08	1.00e-72	266.00
IUUC-Ame-011697	Astyanax mexicanus	77.41	0.00e+00	767.00
IUUC-Bgr-012254	Blumeria graminis	37.95	6.00e-89	321.00
IUUC-Bta-012615	Bos taurus	80.97	0.00e+00	805.00
IUUC-Bci-013720	Botrytis cinerea	37.18	1.00e-88	320.00
IUUC-Bdi-014302	Brachypodium distachyon	44.77	7.00e-101	360.00
IUUC-Bol-015594	Brassica oleracea	42.17	1.00e-88	320.00
IUUC-Bra-017465	Brassica rapa	41.96	8.00e-89	320.00
IUUC-Cel-018632	Caenorhabditis elegans	42.23	2.00e-98	352.00
IUUC-Cja-019747	Callithrix jacchus	81.05	0.00e+00	838.00
IUUC-Cfa-020288	Canis familiaris	81.66	0.00e+00	834.00
IUUC-Cpo-021440	Cavia porcellus	80.12	0.00e+00	818.00
IUUC-Cre-022716	Chlamydomonas reinhardtii	44.85	5.00e-79	287.00
IUUC-Csa-023139	Chlorocebus sabaeus	80.42	8.00e-164	569.00
IUUC-Cho-024481	Choloepus hoffmanni	79.96	0.00e+00	715.00
IUUC-Cin-025106	Ciona intestinalis	57.06	6.00e-162	563.00
IUUC-Csv-026087	Ciona savignyi	55.64	1.00e-162	566.00
IUUC-Cgl-026538	Colletotrichum gloeosporioides	35.19	3.00e-81	296.00
IUUC-Cne-026793	Cryptococcus neoformans	38.97	9.00e-92	330.00
IUUC-Dre-028723	Danio rerio	77.41	0.00e+00	753.00
IUUC-Dno-029299	Dasypus novemcinctus	81.46	0.00e+00	832.00
IUUC-Dor-030345	Dipodomys ordii	62.22	5.00e-58	218.00
IUUC-Dse-031562	Dothistroma septosporum	35.14	2.00e-79	289.00
IUUC-Dme-031783	Drosophila melanogaster	55.31	3.00e-133	468.00
IUUC-Ete-032669	Echinops telfairi	80.35	0.00e+00	833.00
IUUC-Eca-033566	Equus caballus	81.66	0.00e+00	832.00
IUUC-Eeu-034524	Erinaceus europaeus	80.34	4.00e-115	408.00
IUUC-Fca-036215	Felis catus	81.66	0.00e+00	834.00
IUUC-Fal-037018	Ficedula albicollis	78.42	0.00e+00	689.00
IUUC-Fox-037936	Fusarium oxysporum	35.16	9.00e-75	274.00
IUUC-Fso-038366	Fusarium solani	36.65	3.00e-81	295.00
IUUC-Gmo-038966	Gadus morhua	61.56	1.00e-124	439.00
IUUC-Ggr-039942	Gaeumannomyces graminis	36.59	2.00e-76	280.00
IUUC-Gga-040797	Gallus gallus	80.75	0.00e+00	827.00
IUUC-Gac-042598	Gasterosteus aculeatus	65.30	6.00e-175	607.00
IUUC-Gma-044220	Glycine max	41.79	2.00e-94	339.00
IUUC-Ggo-044682	Gorilla gorilla	81.69	0.00e+00	828.00
IUUC-Hsa-045804	Homo sapiens	81.25	0.00e+00	838.00
IUUC-Hvu-047567	Hordeum vulgare	43.29	1.00e-86	313.00
IUUC-Itr-047882	Ictidomys tridecemlineatus	80.54	0.00e+00	839.00
IUUC-Kpa-049369	Komagataella pastoris	38.81	2.00e-58	219.00
IUUC-Lpe-051333	Leersia perrieri	43.12	3.00e-92	332.00
IUUC-Loc-052164	Lepisosteus oculatus	77.21	0.00e+00	784.00
IUUC-Lma-053088	Leptosphaeria maculans	36.76	2.00e-76	279.00
IUUC-Laf-053460	Loxodonta africana	80.93	0.00e+00	838.00
IUUC-Mcc-055859	Macaca mulatta	81.66	0.00e+00	834.00
IUUC-Meu-056134	Macropus eugenii	79.81	0.00e+00	827.00
IUUC-Mor-057251	Magnaporthe oryzae	35.38	1.00e-76	280.00
IUUC-Mpo-057375	Magnaporthe poae	41.60	3.00e-54	204.00
IUUC-Mtr-057656	Medicago truncatula	42.18	8.00e-85	307.00
IUUC-Mla-059145	Melampsora laricipopulina	38.51	7.00e-86	310.00
IUUC-Mga-059855	Meleagris gallopavo	79.30	0.00e+00	822.00
IUUC-Mvi-060372	Microbotryum violaceum	38.94	4.00e-80	291.00
IUUC-Mmr-060826	Microcebus murinus	81.07	0.00e+00	830.00
IUUC-Mdo-062748	Monodelphis domestica	81.26	0.00e+00	828.00
IUUC-Mmu-063351	Mus musculus	81.66	0.00e+00	833.00
IUUC-Mac-064846	Musa acuminata	41.74	8.00e-87	313.00
IUUC-Mpu-066006	Mustela putorius furo	81.66	0.00e+00	834.00
IUUC-Mlu-067398	Myotis lucifugus	81.46	0.00e+00	830.00
IUUC-Nfi-068399	Neosartorya fischeri	37.18	3.00e-86	312.00
IUUC-Ncr-068711	Neurospora crassa	35.44	2.00e-82	299.00
IUUC-Nle-069982	Nomascus leucogenys	81.05	0.00e+00	838.00
IUUC-Opr-070596	Ochotona princeps	80.66	0.00e+00	835.00
IUUC-Ont-072374	Oreochromis niloticus	72.12	0.00e+00	692.00
IUUC-Oan-073166	Ornithorhynchus anatinus	79.90	0.00e+00	628.00
IUUC-Ocu-074371	Oryctolagus cuniculus	81.46	0.00e+00	832.00
IUUC-Oba-075083	Oryza barthii	43.18	2.00e-95	342.00
IUUC-Obr-076405	Oryza brachyantha	43.12	9.00e-93	333.00
IUUC-Ogl-077683	Oryza glaberrima	42.99	2.00e-95	342.00
IUUC-Ogu-078486	Oryza glumaepatula	42.99	6.00e-95	341.00
IUUC-Oin-079679	Oryza indica	43.64	2.00e-97	350.00
IUUC-Olo-080243	Oryza longistaminata	45.13	5.00e-84	304.00
IUUC-Ome-081230	Oryza meridionalis	43.44	2.00e-97	349.00
IUUC-Oni-082961	Oryza nivara	43.44	2.00e-97	348.00
IUUC-Opu-083189	Oryza punctata	42.64	5.00e-95	341.00
IUUC-Oru-084353	Oryza rufipogon	43.72	3.00e-95	342.00
IUUC-Osa-085458	Oryza sativa	43.44	2.00e-97	349.00
IUUC-Ola-086940	Oryzias latipes	70.78	0.00e+00	697.00
IUUC-Olu-087580	Ostreococcus lucimarinus	35.27	2.00e-57	216.00
IUUC-Oga-088703	Otolemur garnettii	76.30	0.00e+00	786.00
IUUC-Oar-089829	Ovis aries	81.17	0.00e+00	807.00
IUUC-Ptr-090838	Pan troglodytes	81.25	0.00e+00	838.00
IUUC-Pan-092261	Papio anubis	80.90	0.00e+00	831.00
IUUC-Psi-093020	Pelodiscus sinensis	79.38	0.00e+00	837.00
IUUC-Pno-094858	Phaeosphaeria nodorum	35.74	4.00e-71	261.00
IUUC-Ppa-095531	Physcomitrella patens	43.08	6.00e-103	367.00
IUUC-Pfo-096812	Poecilia formosa	65.38	2.00e-174	605.00
IUUC-Pab-097805	Pongo abelii	71.48	0.00e+00	706.00
IUUC-Pop-100051	Populus trichocarpa	41.23	2.00e-95	343.00
IUUC-Pca-100152	Procavia capensis	80.93	0.00e+00	836.00
IUUC-Ppe-101244	Prunus persica	44.42	8.00e-98	350.00
IUUC-Pva-102529	Pteropus vampyrus	80.47	0.00e+00	832.00
IUUC-Pgr-103550	Puccinia graminis	34.38	9.00e-86	310.00
IUUC-Ptt-103951	Puccinia triticina	37.54	4.00e-67	248.00
IUUC-Pte-104151	Pyrenophora teres	37.10	2.00e-70	259.00
IUUC-Pyt-104571	Pyrenophora triticirepentis	35.93	1.00e-71	263.00
IUUC-Rno-105747	Rattus norvegicus	81.85	0.00e+00	833.00
IUUC-Sce-106418	Saccharomyces cerevisiae	32.37	3.00e-62	232.00
IUUC-Sha-107334	Sarcophilus harrisii	81.07	0.00e+00	828.00
IUUC-Sja-107794	Schizosaccharomyces japonicus	34.58	8.00e-64	237.00
IUUC-Spo-108189	Schizosaccharomyces pombe	35.56	1.00e-74	273.00
IUUC-Ssl-108550	Sclerotinia sclerotiorum	36.97	6.00e-87	314.00
IUUC-Smo-109578	Selaginella moellendorffii	43.36	9.00e-100	357.00
IUUC-Sit-110102	Setaria italica	42.79	7.00e-97	347.00
IUUC-Sly-111668	Solanum lycopersicum	44.72	7.00e-100	357.00
IUUC-Stu-111928	Solanum tuberosum	44.72	5.00e-100	358.00
IUUC-Sar-113266	Sorex araneus	71.60	0.00e+00	678.00
IUUC-Sbi-114134	Sorghum bicolor	42.57	9.00e-97	347.00
IUUC-Sre-115114	Sporisorium reilianum	39.38	5.00e-91	328.00
IUUC-Ssc-115443	Sus scrofa	81.66	0.00e+00	832.00
IUUC-Tgu-117157	Taeniopygia guttata	79.48	0.00e+00	778.00
IUUC-Tru-118587	Takifugu rubripes	71.26	0.00e+00	684.00
IUUC-Tsy-119157	Tarsius syrichta	80.61	0.00e+00	635.00
IUUC-Tni-120427	Tetraodon nigroviridis	70.98	0.00e+00	687.00
IUUC-Tca-121368	Theobroma cacao	43.39	2.00e-99	356.00
IUUC-Tre-122074	Trichoderma reesei	36.02	2.00e-78	286.00
IUUC-Tvi-122349	Trichoderma virens	35.10	4.00e-77	281.00
IUUC-Tae-125651	Triticum aestivum	42.99	9.00e-94	337.00
IUUC-Tur-125983	Triticum urartu	47.92	6.00e-78	283.00
IUUC-Tme-126951	Tuber melanosporum	40.50	1.00e-91	330.00
IUUC-Tbe-128136	Tupaia belangeri	78.71	0.00e+00	799.00
IUUC-Ttr-129169	Tursiops truncatus	78.33	1.00e-128	452.00
IUUC-Uma-129399	Ustilago maydis	38.54	5.00e-89	321.00
IUUC-Vda-129842	Verticillium dahliae	36.40	2.00e-83	302.00
IUUC-Vpa-130440	Vicugna pacos	80.86	0.00e+00	834.00
IUUC-Vvi-131075	Vitis vinifera	44.02	5.00e-97	348.00
IUUC-Xtr-132713	Xenopus tropicalis	47.56	1.00e-102	366.00
IUUC-Xma-133002	Xiphophorus maculatus	71.47	1.00e-152	532.00
IUUC-Yli-134569	Yarrowia lipolytica	34.06	5.00e-69	254.00
IUUC-Zma-135799	Zea mays	40.77	5.00e-94	338.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence