iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Stu-112593

Ensembl Protein ID

PGSC0003DMT400064159

UniProt Accession

M1CBT7; M1CBT7_SOLTU

Protein Name

Ribosome biogenesis protein BOP1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PGSC0003DMG400024925	PGSC0003DMT400064159	PGSC0003DMT400064159

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.80e-13	51.4	417	455

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH+++v +++  s+   ++sGs Dgt+++W++ tg++++
   Q: 417  GHKGPVVSISTeSTgQWIASGSSDGTVRIWEVETGRCIR 455
           8********99977799*******************986 PP

Organism

Solanum tuberosum

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MKVPRRSARQ KNLQKDAEKE EAINLLEQKE NTEEVVERSK DEENFVESPV VSDDDDEDFS 60
DDDGSLGESG SEDSHLSGEE DVFVSSDGED SFDAKSDDVS GNGASGSGRD DTEHGKDDDA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTAGCATCGT TCTCCTCTTT AAACCCTTGC AACTTTACTC CTCTTCTTCT TCTTCTTCTT 60
CTTCTCCTGC TGTCATAGAG ATGAAGGTTC CGAGGAGGAG TGCCCGTCAG AAAAACTTGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

sot:102596556

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	63.99	0.00e+00	744.00
IUUC-Aml-001507	Ailuropoda melanoleuca	41.55	5.00e-135	473.00
IUUC-Atr-003141	Amborella trichopoda	67.77	4.00e-172	596.00
IUUC-Apl-003545	Anas platyrhynchos	43.15	1.00e-117	415.00
IUUC-Aly-005649	Arabidopsis lyrata	71.57	0.00e+00	937.00
IUUC-Ath-007625	Arabidopsis thaliana	67.57	0.00e+00	912.00
IUUC-Ago-007958	Ashbya gossypii	40.15	1.00e-137	483.00
IUUC-Acl-008344	Aspergillus clavatus	39.94	5.00e-121	427.00
IUUC-Afl-008616	Aspergillus flavus	39.04	1.00e-125	442.00
IUUC-Afu-009083	Aspergillus fumigatus	39.32	7.00e-118	417.00
IUUC-Ani-009365	Aspergillus nidulans	40.37	1.00e-124	439.00
IUUC-Ang-009796	Aspergillus niger	41.40	4.00e-121	427.00
IUUC-Aor-010015	Aspergillus oryzae	39.04	1.00e-125	442.00
IUUC-Ate-010537	Aspergillus terreus	40.56	7.00e-127	446.00
IUUC-Ame-011767	Astyanax mexicanus	45.49	2.00e-62	230.00
IUUC-Bgr-012286	Blumeria graminis	42.28	6.00e-140	490.00
IUUC-Bta-013569	Bos taurus	46.52	4.00e-150	524.00
IUUC-Bci-013820	Botrytis cinerea	42.17	1.00e-127	449.00
IUUC-Bdi-014895	Brachypodium distachyon	68.68	0.00e+00	879.00
IUUC-Bol-016099	Brassica oleracea	72.52	0.00e+00	945.00
IUUC-Bra-017174	Brassica rapa	72.45	0.00e+00	953.00
IUUC-Cel-018201	Caenorhabditis elegans	40.19	7.00e-125	439.00
IUUC-Cja-019009	Callithrix jacchus	41.29	2.00e-129	455.00
IUUC-Cfa-020173	Canis familiaris	42.29	2.00e-137	481.00
IUUC-Cpo-021796	Cavia porcellus	45.84	2.00e-146	511.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	49.69	6.00e-170	589.00
IUUC-Csa-023440	Chlorocebus sabaeus	44.61	3.00e-150	524.00
IUUC-Cin-025782	Ciona intestinalis	44.15	9.00e-149	519.00
IUUC-Csv-026352	Ciona savignyi	44.13	9.00e-144	502.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	36.42	4.00e-100	357.00
IUUC-Cne-027004	Cryptococcus neoformans	41.95	5.00e-146	510.00
IUUC-Cme-027242	Cyanidioschyzon merolae	34.90	4.00e-106	377.00
IUUC-Dre-028658	Danio rerio	45.72	1.00e-155	542.00
IUUC-Dno-028883	Dasypus novemcinctus	47.19	2.00e-154	538.00
IUUC-Dor-031031	Dipodomys ordii	44.52	1.00e-149	522.00
IUUC-Dse-031443	Dothistroma septosporum	39.09	5.00e-131	460.00
IUUC-Dme-031786	Drosophila melanogaster	44.08	7.00e-155	540.00
IUUC-Eca-033677	Equus caballus	45.89	2.00e-148	518.00
IUUC-Eeu-035310	Erinaceus europaeus	42.15	2.00e-108	385.00
IUUC-Fca-035888	Felis catus	44.75	4.00e-146	510.00
IUUC-Fal-037438	Ficedula albicollis	46.09	6.00e-118	416.00
IUUC-Fox-037973	Fusarium oxysporum	42.06	5.00e-137	480.00
IUUC-Fso-038187	Fusarium solani	41.45	3.00e-134	471.00
IUUC-Gmo-039114	Gadus morhua	42.07	1.00e-131	462.00
IUUC-Ggr-039746	Gaeumannomyces graminis	39.91	5.00e-139	487.00
IUUC-Gga-040631	Gallus gallus	47.08	2.00e-82	297.00
IUUC-Gac-042582	Gasterosteus aculeatus	44.75	2.00e-143	501.00
IUUC-Gma-044307	Glycine max	74.54	0.00e+00	987.00
IUUC-Ggo-045587	Gorilla gorilla	44.30	6.00e-150	523.00
IUUC-Hsa-046319	Homo sapiens	44.28	1.00e-149	522.00
IUUC-Hvu-047526	Hordeum vulgare	68.34	0.00e+00	854.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	45.11	4.00e-146	510.00
IUUC-Kpa-049221	Komagataella pastoris	39.16	1.00e-124	439.00
IUUC-Lch-049640	Latimeria chalumnae	46.35	1.00e-155	542.00
IUUC-Lpe-051135	Leersia perrieri	66.39	0.00e+00	804.00
IUUC-Loc-051930	Lepisosteus oculatus	46.77	1.00e-157	548.00
IUUC-Lma-053290	Leptosphaeria maculans	42.44	2.00e-130	458.00
IUUC-Laf-053903	Loxodonta africana	41.94	9.00e-130	456.00
IUUC-Mcc-055471	Macaca mulatta	44.61	1.00e-150	525.00
IUUC-Meu-056190	Macropus eugenii	45.10	2.00e-147	514.00
IUUC-Mor-057135	Magnaporthe oryzae	40.11	1.00e-132	466.00
IUUC-Mpo-057475	Magnaporthe poae	38.49	4.00e-131	460.00
IUUC-Mtr-058689	Medicago truncatula	68.77	0.00e+00	896.00
IUUC-Mla-059149	Melampsora laricipopulina	43.21	8.00e-141	493.00
IUUC-Mga-059645	Meleagris gallopavo	43.83	4.00e-45	173.00
IUUC-Mvi-060485	Microbotryum violaceum	42.90	3.00e-130	459.00
IUUC-Mmr-061674	Microcebus murinus	45.45	7.00e-145	506.00
IUUC-Mdo-062973	Monodelphis domestica	44.86	3.00e-152	531.00
IUUC-Mmu-064180	Mus musculus	46.02	3.00e-149	521.00
IUUC-Mac-064535	Musa acuminata	75.00	0.00e+00	692.00
IUUC-Mpu-066406	Mustela putorius furo	45.73	1.00e-152	532.00
IUUC-Mlu-067795	Myotis lucifugus	46.52	2.00e-143	501.00
IUUC-Nfi-068516	Neosartorya fischeri	39.31	3.00e-112	398.00
IUUC-Ncr-068767	Neurospora crassa	41.76	9.00e-124	436.00
IUUC-Opr-071084	Ochotona princeps	41.94	4.00e-57	214.00
IUUC-Ont-071614	Oreochromis niloticus	44.50	1.00e-150	526.00
IUUC-Oba-075980	Oryza barthii	65.68	0.00e+00	803.00
IUUC-Obr-076799	Oryza brachyantha	69.12	0.00e+00	867.00
IUUC-Ogl-077134	Oryza glaberrima	69.28	0.00e+00	853.00
IUUC-Ogu-078655	Oryza glumaepatula	66.88	0.00e+00	833.00
IUUC-Oin-079654	Oryza indica	69.28	0.00e+00	852.00
IUUC-Olo-080706	Oryza longistaminata	65.83	0.00e+00	803.00
IUUC-Ome-081716	Oryza meridionalis	66.74	2.00e-156	545.00
IUUC-Oni-082508	Oryza nivara	66.09	0.00e+00	810.00
IUUC-Opu-083707	Oryza punctata	65.74	0.00e+00	799.00
IUUC-Oru-084453	Oryza rufipogon	65.83	0.00e+00	803.00
IUUC-Osa-085811	Oryza sativa	68.91	0.00e+00	853.00
IUUC-Ola-087361	Oryzias latipes	46.66	7.00e-156	543.00
IUUC-Oga-088015	Otolemur garnettii	45.63	1.00e-149	522.00
IUUC-Oar-090058	Ovis aries	37.67	1.00e-64	239.00
IUUC-Ptr-090631	Pan troglodytes	41.16	2.00e-57	215.00
IUUC-Pan-092306	Papio anubis	44.69	8.00e-150	523.00
IUUC-Pma-094622	Petromyzon marinus	44.59	6.00e-150	523.00
IUUC-Pno-094794	Phaeosphaeria nodorum	40.06	9.00e-120	423.00
IUUC-Ppa-095528	Physcomitrella patens	58.33	4.00e-148	516.00
IUUC-Pfo-096682	Poecilia formosa	44.30	3.00e-153	534.00
IUUC-Pab-097939	Pongo abelii	44.09	2.00e-133	468.00
IUUC-Pop-099043	Populus trichocarpa	80.99	0.00e+00	931.00
IUUC-Pca-100333	Procavia capensis	46.03	7.00e-153	533.00
IUUC-Ppe-102078	Prunus persica	73.57	0.00e+00	922.00
IUUC-Pgr-103525	Puccinia graminis	42.16	2.00e-127	449.00
IUUC-Ptt-103929	Puccinia triticina	42.07	3.00e-123	435.00
IUUC-Pte-104029	Pyrenophora teres	43.34	7.00e-139	486.00
IUUC-Pyt-104446	Pyrenophora triticirepentis	43.03	1.00e-139	489.00
IUUC-Rno-105248	Rattus norvegicus	45.87	4.00e-150	524.00
IUUC-Sce-106381	Saccharomyces cerevisiae	40.15	7.00e-133	466.00
IUUC-Sha-106519	Sarcophilus harrisii	45.80	2.00e-154	538.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	39.72	1.00e-124	439.00
IUUC-Spo-108071	Schizosaccharomyces pombe	41.70	1.00e-127	449.00
IUUC-Smo-109604	Selaginella moellendorffii	60.31	0.00e+00	729.00
IUUC-Sit-110551	Setaria italica	69.82	0.00e+00	874.00
IUUC-Sly-110970	Solanum lycopersicum	96.09	0.00e+00	803.00
IUUC-Sar-113123	Sorex araneus	41.30	7.00e-62	229.00
IUUC-Sbi-113945	Sorghum bicolor	68.29	0.00e+00	880.00
IUUC-Sre-115188	Sporisorium reilianum	38.78	3.00e-126	444.00
IUUC-Ssc-115352	Sus scrofa	45.23	6.00e-151	526.00
IUUC-Tru-117685	Takifugu rubripes	45.50	4.00e-155	540.00
IUUC-Tni-119982	Tetraodon nigroviridis	46.70	7.00e-150	523.00
IUUC-Tca-121664	Theobroma cacao	78.29	0.00e+00	1042.00
IUUC-Tre-122229	Trichoderma reesei	41.35	1.00e-119	422.00
IUUC-Tvi-122576	Trichoderma virens	41.73	8.00e-122	430.00
IUUC-Tae-124110	Triticum aestivum	69.43	0.00e+00	828.00
IUUC-Tur-126781	Triticum urartu	64.49	0.00e+00	734.00
IUUC-Tme-127080	Tuber melanosporum	44.44	6.00e-151	526.00
IUUC-Ttr-128514	Tursiops truncatus	43.38	5.00e-96	344.00
IUUC-Uma-129556	Ustilago maydis	39.00	8.00e-124	437.00
IUUC-Vda-129715	Verticillium dahliae	40.14	7.00e-131	460.00
IUUC-Vvi-131211	Vitis vinifera	75.94	0.00e+00	1016.00
IUUC-Xma-133883	Xiphophorus maculatus	44.71	3.00e-148	518.00
IUUC-Yli-134438	Yarrowia lipolytica	40.72	7.00e-125	440.00
IUUC-Zma-135341	Zea mays	61.46	0.00e+00	826.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence