iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-100064

Ensembl Protein ID

POPTR_0001s25810.1

UniProt Accession

B9GII4; B9GII4_POPTR

Genbank Protein ID

EEE84618.2

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000337

Gene Name

POPTRDRAFT_829607; POPTR_0001s25810g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0001s25810	POPTR_0001s25810.1	POPTR_0001s25810.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.70e-18	66.0	175	206

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd..tllvsGsdDgtikvWDl 30
           H+ +vtcl+f ++  ++l+sG   g++ vWD+
   Q: 175  HSRRVTCLEFhPTknNILLSGDKKGQVGVWDF 206
           999********444699**************6 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MAPRTRRMAF PKVLIERDTD SEQSSSSDDE DELEEEDEGP PSESEPEEED STKNGYEERI 60
EEDLSLKKKG KAPITISLKK VCKVCKKPGH EAGFKGATYI DCPMKPCFLC KMPGHTTMTC 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATCAAAAATG GCCCCTCGGA CAAGAAGAAT GGCGTTTCCG AAAGTGTTGA TTGAGAGAGA 60
CACCGACTCC GAGCAAAGTT CTTCATCGGA CGATGAAGAT GAGTTGGAAG AAGAAGATGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR033312--DDB2
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR001878--Znf_CCHC

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006281--P:DNA repair
GO:0010224--P:response to UV-B

KEGG

pop:POPTR_0001s25810g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000470	Aegilops tauschii	69.27	0.00e+00	686.00
IUUC-Aml-002203	Ailuropoda melanoleuca	28.05	2.00e-31	129.00
IUUC-Atr-002957	Amborella trichopoda	73.04	0.00e+00	709.00
IUUC-Apl-003832	Anas platyrhynchos	32.18	5.00e-38	151.00
IUUC-Aca-004358	Anolis carolinensis	32.47	8.00e-40	157.00
IUUC-Aly-006296	Arabidopsis lyrata	79.46	0.00e+00	741.00
IUUC-Ath-007115	Arabidopsis thaliana	73.68	0.00e+00	751.00
IUUC-Ame-010817	Astyanax mexicanus	31.06	7.00e-41	160.00
IUUC-Bta-012914	Bos taurus	29.18	2.00e-35	142.00
IUUC-Bdi-014261	Brachypodium distachyon	69.16	0.00e+00	684.00
IUUC-Bol-015317	Brassica oleracea	77.66	0.00e+00	732.00
IUUC-Bra-016848	Brassica rapa	77.39	0.00e+00	730.00
IUUC-Cel-018567	Caenorhabditis elegans	25.62	8.00e-07	47.40
IUUC-Cja-018967	Callithrix jacchus	28.23	8.00e-34	137.00
IUUC-Cfa-021238	Canis familiaris	28.35	5.00e-30	124.00
IUUC-Cpo-022063	Cavia porcellus	30.03	9.00e-35	140.00
IUUC-Csa-023382	Chlorocebus sabaeus	28.83	6.00e-34	137.00
IUUC-Dre-028732	Danio rerio	28.86	3.00e-34	139.00
IUUC-Dor-030461	Dipodomys ordii	34.51	3.00e-30	125.00
IUUC-Ete-033038	Echinops telfairi	29.18	4.00e-32	131.00
IUUC-Eca-033772	Equus caballus	28.57	6.00e-33	134.00
IUUC-Eeu-035234	Erinaceus europaeus	31.58	4.00e-12	65.90
IUUC-Fca-036095	Felis catus	28.88	3.00e-30	125.00
IUUC-Gmo-039683	Gadus morhua	31.56	1.00e-43	170.00
IUUC-Gga-040530	Gallus gallus	32.18	1.00e-38	154.00
IUUC-Gac-041517	Gasterosteus aculeatus	30.43	2.00e-37	149.00
IUUC-Gma-043378	Glycine max	78.67	0.00e+00	816.00
IUUC-Ggo-045364	Gorilla gorilla	28.83	9.00e-35	140.00
IUUC-Hsa-046354	Homo sapiens	28.83	8.00e-35	140.00
IUUC-Hvu-047151	Hordeum vulgare	71.24	2.00e-133	468.00
IUUC-Itr-048304	Ictidomys tridecemlineatus	30.40	4.00e-36	144.00
IUUC-Lpe-051256	Leersia perrieri	68.10	0.00e+00	663.00
IUUC-Loc-052398	Lepisosteus oculatus	31.60	2.00e-37	150.00
IUUC-Laf-053562	Loxodonta africana	30.33	1.00e-35	143.00
IUUC-Mcc-055197	Macaca mulatta	29.37	1.00e-29	123.00
IUUC-Meu-056151	Macropus eugenii	30.60	5.00e-31	127.00
IUUC-Mtr-057940	Medicago truncatula	76.31	0.00e+00	778.00
IUUC-Mga-059923	Meleagris gallopavo	32.29	1.00e-40	160.00
IUUC-Mmr-061465	Microcebus murinus	28.72	1.00e-28	120.00
IUUC-Mdo-063063	Monodelphis domestica	30.40	1.00e-39	156.00
IUUC-Mmu-064294	Mus musculus	29.91	1.00e-36	146.00
IUUC-Mac-065598	Musa acuminata	71.30	0.00e+00	701.00
IUUC-Mpu-066831	Mustela putorius furo	28.27	3.00e-30	125.00
IUUC-Mlu-067222	Myotis lucifugus	29.23	2.00e-32	132.00
IUUC-Nle-069581	Nomascus leucogenys	28.83	1.00e-34	140.00
IUUC-Opr-070644	Ochotona princeps	30.12	8.00e-36	144.00
IUUC-Ont-072605	Oreochromis niloticus	30.61	1.00e-37	150.00
IUUC-Oan-072973	Ornithorhynchus anatinus	32.54	5.00e-40	157.00
IUUC-Ocu-074615	Oryctolagus cuniculus	31.72	4.00e-37	148.00
IUUC-Oba-075283	Oryza barthii	67.43	0.00e+00	640.00
IUUC-Obr-076605	Oryza brachyantha	69.00	0.00e+00	682.00
IUUC-Ogl-077512	Oryza glaberrima	68.41	0.00e+00	657.00
IUUC-Ogu-078329	Oryza glumaepatula	67.63	0.00e+00	641.00
IUUC-Oin-079980	Oryza indica	67.63	0.00e+00	640.00
IUUC-Olo-080516	Oryza longistaminata	68.61	0.00e+00	630.00
IUUC-Ome-081415	Oryza meridionalis	69.61	0.00e+00	653.00
IUUC-Oni-082985	Oryza nivara	67.63	0.00e+00	640.00
IUUC-Opu-084159	Oryza punctata	69.65	0.00e+00	679.00
IUUC-Oru-085137	Oryza rufipogon	68.70	0.00e+00	660.00
IUUC-Osa-085614	Oryza sativa	68.70	0.00e+00	660.00
IUUC-Ola-087044	Oryzias latipes	28.35	7.00e-40	157.00
IUUC-Oga-088274	Otolemur garnettii	29.43	6.00e-34	137.00
IUUC-Oar-089826	Ovis aries	29.18	3.00e-35	142.00
IUUC-Ptr-091631	Pan troglodytes	28.83	8.00e-35	140.00
IUUC-Pan-092535	Papio anubis	28.83	1.00e-34	140.00
IUUC-Psi-093815	Pelodiscus sinensis	30.84	2.00e-36	146.00
IUUC-Pma-094474	Petromyzon marinus	31.50	5.00e-36	144.00
IUUC-Ppa-095414	Physcomitrella patens	58.30	5.00e-167	580.00
IUUC-Pfo-096559	Poecilia formosa	30.64	6.00e-39	154.00
IUUC-Pab-098528	Pongo abelii	28.83	1.00e-34	140.00
IUUC-Pca-100803	Procavia capensis	29.27	2.00e-34	139.00
IUUC-Ppe-101966	Prunus persica	78.52	0.00e+00	810.00
IUUC-Pva-103213	Pteropus vampyrus	29.73	8.00e-35	140.00
IUUC-Rno-105087	Rattus norvegicus	31.10	7.00e-38	150.00
IUUC-Sha-107466	Sarcophilus harrisii	31.27	2.00e-40	159.00
IUUC-Smo-108958	Selaginella moellendorffii	58.58	3.00e-163	567.00
IUUC-Sit-109968	Setaria italica	71.20	0.00e+00	647.00
IUUC-Sly-111495	Solanum lycopersicum	73.82	0.00e+00	755.00
IUUC-Sar-113272	Sorex araneus	30.93	1.00e-34	140.00
IUUC-Sbi-114706	Sorghum bicolor	66.30	5.00e-174	603.00
IUUC-Ssc-115437	Sus scrofa	29.43	2.00e-31	129.00
IUUC-Tgu-116602	Taeniopygia guttata	31.27	1.00e-38	153.00
IUUC-Tru-118698	Takifugu rubripes	32.42	4.00e-33	135.00
IUUC-Tsy-119027	Tarsius syrichta	28.52	2.00e-27	116.00
IUUC-Tni-119787	Tetraodon nigroviridis	29.60	3.00e-39	155.00
IUUC-Tca-121447	Theobroma cacao	78.79	0.00e+00	798.00
IUUC-Tae-123253	Triticum aestivum	71.49	0.00e+00	695.00
IUUC-Tur-126724	Triticum urartu	71.53	0.00e+00	689.00
IUUC-Tbe-127680	Tupaia belangeri	27.87	4.00e-25	108.00
IUUC-Vvi-131001	Vitis vinifera	77.25	0.00e+00	804.00
IUUC-Xtr-132266	Xenopus tropicalis	32.11	2.00e-41	162.00
IUUC-Xma-133034	Xiphophorus maculatus	29.86	1.00e-36	146.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence