iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Mdo-062748

UUCD1 version

UUC-MoD-00144

Ensembl Protein ID

ENSMODP00000005474.1

UniProt Accession

F6RSY7; F6RSY7_MONDO

Protein Name

Uncharacterized protein

Gene Name

PRPF4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSMODG00000004444.2	ENSMODT00000005592.2	ENSMODP00000005474.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.50e-38	128.1	406	444
UBD/Beta-Prp	1.80e-93	313.1	231	478

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH  ++++++f ++  ++++Gs+D+t+kvWDlr+ +++ 
   Q: 406  GHLKEIYGISFsPNgYHIATGSGDNTCKVWDLRQRRCVY 444
           7999********77799*****************99985 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgk........ilvtgseDrtikvwdlstgkcvht 89
           ++ +i+  +fsp+++llat++++g  k+w+v + +ll++l gh+  v a+ f+p++          l++++ D+ +k+w+l++ ++v  
   Q: 231  DDRPISYCHFSPNSKLLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTisldkkdvNLASCAADGSVKLWSLESDEPVAD 319
           68899999**********************************************998888888889*********************** PP
   S: 90   lkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgg 178
           ++gh+ +v  + ++psg +l ++  dr  r+wdle ++++   ++gh+  v  +++h+dg+l  +G+lD + r+Wdl+tg+++  l+g 
   Q: 320  IEGHSVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEIL-HQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEG- 406
           *****************************************.********************************************99. PP
   S: 179  htdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfs.pnderlvsgssDgsiriW 249
           h + +y +sf++ng ++++gs d+t k+wdl++ +cv+t  +h++ v+ v+f   ++++l++g+ D++ ++W
   Q: 407  HLKEIYGISFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEpIHGNFLLTGAYDNTAKVW 478
           *****************************************************88***************** PP

Organism

Monodelphis domestica

Protein Sequence
(Fasta)

MASSRASATA TKTPSRTPED TASPVVKKPH IYYGSLEEKE KERLARGESG MLGKEGIKAG 60
IEAGNINITS GEVFEIEEHI SERQAEVLAE FERRKRARQI NVSTDDSEVK ACLRALGEPI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCTTCTT CTCGAGCTTC GGCCACGGTG CGGCTCTGGC CTTAATATTT GAAGATCGTT 60
AGGGGTTTTT TTGCCCACAT GTAGGGGAGC TGAGATGGGC TTCAACCGCT TTCTCAGATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR014906--PRP4-like
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08799--PRP4
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00500--SFM
SM00320--WD40

Gene Ontology

GO:0046540--C:U4/U6 x U5 tri-snRNP complex
GO:0030621--F:U4 snRNA binding
GO:0017070--F:U6 snRNA binding
GO:0000398--P:mRNA splicing, via spliceosome

KEGG

mdo:100010266

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000771	Aegilops tauschii	43.93	2.00e-99	355.00
IUUC-Aml-001737	Ailuropoda melanoleuca	95.85	0.00e+00	986.00
IUUC-Apl-003723	Anas platyrhynchos	88.12	0.00e+00	944.00
IUUC-Aca-004972	Anolis carolinensis	89.33	0.00e+00	894.00
IUUC-Aly-006531	Arabidopsis lyrata	42.25	2.00e-92	333.00
IUUC-Ath-007367	Arabidopsis thaliana	43.14	4.00e-106	378.00
IUUC-Afl-008522	Aspergillus flavus	40.00	5.00e-99	354.00
IUUC-Afu-008904	Aspergillus fumigatus	38.72	2.00e-95	342.00
IUUC-Ani-009198	Aspergillus nidulans	39.38	4.00e-98	352.00
IUUC-Aor-009881	Aspergillus oryzae	40.00	4.00e-99	355.00
IUUC-Ate-010333	Aspergillus terreus	38.30	9.00e-88	317.00
IUUC-Ame-011697	Astyanax mexicanus	80.00	0.00e+00	811.00
IUUC-Bgr-012254	Blumeria graminis	38.97	4.00e-98	352.00
IUUC-Bta-012615	Bos taurus	94.46	0.00e+00	965.00
IUUC-Bci-013720	Botrytis cinerea	38.84	3.00e-99	355.00
IUUC-Bdi-014302	Brachypodium distachyon	45.21	1.00e-108	386.00
IUUC-Bol-015594	Brassica oleracea	42.46	5.00e-97	348.00
IUUC-Bra-017465	Brassica rapa	42.24	3.00e-97	349.00
IUUC-Cja-019747	Callithrix jacchus	94.85	0.00e+00	1002.00
IUUC-Cfa-020288	Canis familiaris	95.85	0.00e+00	989.00
IUUC-Cpo-021440	Cavia porcellus	94.08	0.00e+00	972.00
IUUC-Csa-023139	Chlorocebus sabaeus	97.30	0.00e+00	695.00
IUUC-Cho-024481	Choloepus hoffmanni	93.81	0.00e+00	850.00
IUUC-Cgl-026538	Colletotrichum gloeosporioides	37.72	4.00e-93	336.00
IUUC-Cne-026793	Cryptococcus neoformans	40.65	2.00e-105	375.00
IUUC-Dno-029299	Dasypus novemcinctus	95.26	0.00e+00	984.00
IUUC-Dor-030345	Dipodomys ordii	69.12	5.00e-90	325.00
IUUC-Dse-031562	Dothistroma septosporum	36.95	4.00e-90	325.00
IUUC-Ete-032669	Echinops telfairi	93.50	0.00e+00	994.00
IUUC-Eca-033566	Equus caballus	95.84	0.00e+00	983.00
IUUC-Eeu-034524	Erinaceus europaeus	97.91	7.00e-146	510.00
IUUC-Fca-036215	Felis catus	95.85	0.00e+00	988.00
IUUC-Fal-037018	Ficedula albicollis	89.98	0.00e+00	794.00
IUUC-Fox-037936	Fusarium oxysporum	37.21	7.00e-86	311.00
IUUC-Fso-038366	Fusarium solani	37.45	4.00e-91	328.00
IUUC-Gmo-038966	Gadus morhua	66.20	9.00e-140	489.00
IUUC-Ggr-039942	Gaeumannomyces graminis	36.13	6.00e-84	304.00
IUUC-Gga-040797	Gallus gallus	90.62	0.00e+00	934.00
IUUC-Gac-042598	Gasterosteus aculeatus	68.64	0.00e+00	667.00
IUUC-Gma-044220	Glycine max	45.18	3.00e-103	369.00
IUUC-Ggo-044682	Gorilla gorilla	95.45	0.00e+00	976.00
IUUC-Hsa-045804	Homo sapiens	94.66	0.00e+00	999.00
IUUC-Hvu-047567	Hordeum vulgare	44.19	2.00e-94	339.00
IUUC-Itr-047882	Ictidomys tridecemlineatus	94.84	0.00e+00	1002.00
IUUC-Kpa-049369	Komagataella pastoris	34.05	2.00e-62	232.00
IUUC-Lch-050074	Latimeria chalumnae	80.19	0.00e+00	818.00
IUUC-Lpe-051333	Leersia perrieri	44.03	5.00e-99	354.00
IUUC-Loc-052164	Lepisosteus oculatus	81.40	0.00e+00	833.00
IUUC-Lma-053088	Leptosphaeria maculans	36.36	1.00e-84	306.00
IUUC-Laf-053460	Loxodonta africana	94.46	0.00e+00	1001.00
IUUC-Mcc-055859	Macaca mulatta	95.85	0.00e+00	988.00
IUUC-Meu-056134	Macropus eugenii	98.83	0.00e+00	1025.00
IUUC-Mor-057251	Magnaporthe oryzae	36.81	8.00e-86	311.00
IUUC-Mtr-057656	Medicago truncatula	44.65	2.00e-93	336.00
IUUC-Mla-059145	Melampsora laricipopulina	40.88	2.00e-102	365.00
IUUC-Mmr-060826	Microcebus murinus	95.06	0.00e+00	983.00
IUUC-Mac-064846	Musa acuminata	44.93	7.00e-96	344.00
IUUC-Mpu-066006	Mustela putorius furo	95.85	0.00e+00	988.00
IUUC-Mlu-067398	Myotis lucifugus	95.65	0.00e+00	985.00
IUUC-Nfi-068399	Neosartorya fischeri	38.52	8.00e-101	360.00
IUUC-Ncr-068711	Neurospora crassa	37.50	6.00e-93	334.00
IUUC-Nle-069982	Nomascus leucogenys	94.85	0.00e+00	1002.00
IUUC-Opr-070596	Ochotona princeps	94.47	0.00e+00	999.00
IUUC-Ont-072374	Oreochromis niloticus	75.10	0.00e+00	755.00
IUUC-Oan-073166	Ornithorhynchus anatinus	93.61	0.00e+00	746.00
IUUC-Ocu-074371	Oryctolagus cuniculus	96.05	0.00e+00	988.00
IUUC-Oba-075083	Oryza barthii	43.64	3.00e-102	365.00
IUUC-Obr-076405	Oryza brachyantha	43.79	1.00e-98	353.00
IUUC-Ogl-077683	Oryza glaberrima	43.64	5.00e-102	365.00
IUUC-Ogu-078486	Oryza glumaepatula	43.86	7.00e-102	364.00
IUUC-Oin-079679	Oryza indica	43.84	9.00e-105	374.00
IUUC-Olo-080243	Oryza longistaminata	45.94	4.00e-90	325.00
IUUC-Ome-081230	Oryza meridionalis	43.64	1.00e-104	374.00
IUUC-Oni-082961	Oryza nivara	43.64	9.00e-105	374.00
IUUC-Opu-083189	Oryza punctata	42.76	2.00e-101	362.00
IUUC-Oru-084353	Oryza rufipogon	43.93	2.00e-102	366.00
IUUC-Osa-085458	Oryza sativa	43.64	1.00e-104	374.00
IUUC-Ola-086940	Oryzias latipes	74.65	0.00e+00	759.00
IUUC-Oga-088703	Otolemur garnettii	90.44	0.00e+00	951.00
IUUC-Oar-089829	Ovis aries	95.03	0.00e+00	970.00
IUUC-Ptr-090838	Pan troglodytes	94.66	0.00e+00	999.00
IUUC-Pan-092261	Papio anubis	94.67	0.00e+00	998.00
IUUC-Psi-093020	Pelodiscus sinensis	90.41	0.00e+00	948.00
IUUC-Pno-094858	Phaeosphaeria nodorum	36.85	2.00e-79	289.00
IUUC-Ppa-095531	Physcomitrella patens	45.57	6.00e-119	421.00
IUUC-Pfo-096812	Poecilia formosa	68.69	0.00e+00	665.00
IUUC-Pop-100051	Populus trichocarpa	44.59	2.00e-105	375.00
IUUC-Pca-100152	Procavia capensis	95.33	0.00e+00	993.00
IUUC-Ppe-101244	Prunus persica	46.68	2.00e-107	382.00
IUUC-Pgr-103550	Puccinia graminis	36.88	2.00e-102	366.00
IUUC-Ptt-103951	Puccinia triticina	34.47	2.00e-80	293.00
IUUC-Pte-104151	Pyrenophora teres	37.15	6.00e-80	291.00
IUUC-Pyt-104571	Pyrenophora triticirepentis	37.80	1.00e-81	296.00
IUUC-Rno-105747	Rattus norvegicus	95.65	0.00e+00	985.00
IUUC-Sce-106418	Saccharomyces cerevisiae	34.07	4.00e-69	255.00
IUUC-Spo-108189	Schizosaccharomyces pombe	38.12	2.00e-81	296.00
IUUC-Ssl-108550	Sclerotinia sclerotiorum	37.98	2.00e-97	349.00
IUUC-Smo-108924	Selaginella moellendorffii	46.81	1.00e-112	399.00
IUUC-Sit-110102	Setaria italica	44.57	7.00e-104	370.00
IUUC-Sly-111668	Solanum lycopersicum	47.18	7.00e-108	384.00
IUUC-Stu-111928	Solanum tuberosum	45.54	3.00e-107	382.00
IUUC-Sbi-114134	Sorghum bicolor	43.89	2.00e-103	369.00
IUUC-Sre-115114	Sporisorium reilianum	41.63	2.00e-105	375.00
IUUC-Ssc-115443	Sus scrofa	95.85	0.00e+00	986.00
IUUC-Tgu-117157	Taeniopygia guttata	89.86	0.00e+00	885.00
IUUC-Tru-118587	Takifugu rubripes	74.01	0.00e+00	728.00
IUUC-Tni-120427	Tetraodon nigroviridis	74.46	0.00e+00	739.00
IUUC-Tca-121368	Theobroma cacao	44.42	5.00e-106	378.00
IUUC-Tre-122074	Trichoderma reesei	37.23	4.00e-88	318.00
IUUC-Tvi-122349	Trichoderma virens	36.73	4.00e-87	315.00
IUUC-Tur-126532	Triticum urartu	43.34	6.00e-88	317.00
IUUC-Tbe-128136	Tupaia belangeri	86.45	0.00e+00	891.00
IUUC-Ttr-129169	Tursiops truncatus	95.64	9.00e-162	563.00
IUUC-Uma-129399	Ustilago maydis	42.17	4.00e-102	365.00
IUUC-Vda-129842	Verticillium dahliae	37.98	3.00e-94	339.00
IUUC-Vpa-130440	Vicugna pacos	94.66	0.00e+00	1000.00
IUUC-Vvi-131075	Vitis vinifera	47.62	1.00e-108	387.00
IUUC-Xtr-132713	Xenopus tropicalis	49.12	9.00e-109	387.00
IUUC-Yli-134569	Yarrowia lipolytica	34.93	7.00e-78	284.00
IUUC-Zma-135799	Zea mays	42.40	9.00e-101	360.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence