iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007683

UUCD1 version

UUC-ArT-01297

Ensembl Protein ID

AT5G64630.2

UniProt Accession

Q9SXY1; Q94JQ9; FAS2_ARATH

Genbank Protein ID

BAA77766.1; BAB11430.1; AED97929.1; AED97930.1; AAK53019.1; AAL69523.1

Protein Name

Chromatin assembly factor 1 subunit FAS2; CAF-1 p60 homolog; Protein FASCIATA 2

Genbank Nucleotide ID

AB027230; AB010076; CP002688; CP002688; AF375435; AY074827

Gene Name

FAS2; NFB1; At5g64630; MUB3.9

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G64630	AT5G64630.1	AT5G64630.1
AT5G64630	AT5G64630.3	AT5G64630.3
AT5G64630	AT5G64630.2	AT5G64630.2

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.20e-19	69.1	111	145

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgv 34
           H  +v +l++ +d  +l+sGs D+++ +WD+ +g 
   Q: 111  HRKDVLDLQWsPDdAYLISGSVDNSCIIWDVNKGS 145
           8889*******777****************98876 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Component of the chromatin assembly factor complex (CAF-1) involved in chromatin assembly following DNA replication and DNA repair. Required for several aspects of development, including seedling growth and leaf hair differentiation. Plays a critical role in the organization of shoot apical meristem (SAM) and root apical meristem (RAM) during postembryonic development by facilitating stable maintenance of gene expression states. Seems not required to maintain transcriptional repression of heterochromatic genes. Involved in heterologous recombination.

Protein Sequence
(Fasta)

MKGGTIQISW HDGKPVLTVD FHPISGLLAT AGADYDIKLW LINSGQAEKK VPSVSYQSSL 60
TYHGCAVNTI RFSPSGELLA SGADGGELFI WKLHPSETNQ SWKVHKSLSF HRKDVLDLQW 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAATGATCCC AGAAGACGCG CCCAGAGTGA CAGTCCTTTT AGTTATTCTT CTTCCCAGTA 60
ATCCACAAAC CCTAGAAAAT TTTCTCAAGA AAATCCGAAT CACGATTCTG GGCATTGTGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0156--Chromatin regulator
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0233--DNA recombination
KW-0234--DNA repair
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0033186--C:CAF-1 complex
GO:0005634--C:nucleus
GO:0042393--F:histone binding
GO:0008283--P:cell proliferation
GO:0016569--P:covalent chromatin modification
GO:0006310--P:DNA recombination
GO:0000724--P:double-strand break repair via homologous recombination
GO:0031507--P:heterochromatin assembly
GO:0048366--P:leaf development
GO:0009933--P:meristem structural organization
GO:0006334--P:nucleosome assembly
GO:0009555--P:pollen development
GO:0006355--P:regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated
GO:0010026--P:trichome differentiation

KEGG

ath:AT5G64630

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000474	Aegilops tauschii	57.37	3.00e-164	571.00
IUUC-Aml-001755	Ailuropoda melanoleuca	38.12	5.00e-84	304.00
IUUC-Atr-002674	Amborella trichopoda	58.78	1.00e-166	578.00
IUUC-Apl-003701	Anas platyrhynchos	40.69	8.00e-86	310.00
IUUC-Aca-004692	Anolis carolinensis	42.08	5.00e-89	321.00
IUUC-Aly-006286	Arabidopsis lyrata	95.50	0.00e+00	974.00
IUUC-Ago-007940	Ashbya gossypii	37.77	5.00e-69	254.00
IUUC-Acl-008070	Aspergillus clavatus	40.10	7.00e-38	151.00
IUUC-Afl-008414	Aspergillus flavus	41.62	3.00e-39	155.00
IUUC-Ani-009399	Aspergillus nidulans	39.59	2.00e-37	149.00
IUUC-Ang-009650	Aspergillus niger	38.94	6.00e-36	145.00
IUUC-Aor-009937	Aspergillus oryzae	41.62	4.00e-39	155.00
IUUC-Ame-011094	Astyanax mexicanus	41.58	4.00e-91	328.00
IUUC-Bta-013423	Bos taurus	38.70	1.00e-84	306.00
IUUC-Bdi-014860	Brachypodium distachyon	67.61	9.00e-154	536.00
IUUC-Bol-016603	Brassica oleracea	88.48	0.00e+00	908.00
IUUC-Bra-017175	Brassica rapa	89.14	0.00e+00	868.00
IUUC-Cel-018272	Caenorhabditis elegans	31.46	4.00e-43	168.00
IUUC-Cja-019558	Callithrix jacchus	39.47	2.00e-85	309.00
IUUC-Cfa-020900	Canis familiaris	38.89	8.00e-83	300.00
IUUC-Cpo-022054	Cavia porcellus	38.93	2.00e-73	269.00
IUUC-Csa-023850	Chlorocebus sabaeus	39.78	1.00e-86	313.00
IUUC-Cho-024510	Choloepus hoffmanni	33.22	1.00e-39	156.00
IUUC-Cin-025178	Ciona intestinalis	40.45	6.00e-80	290.00
IUUC-Cme-027136	Cyanidioschyzon merolae	33.63	5.00e-60	224.00
IUUC-Dre-027879	Danio rerio	37.12	9.00e-89	320.00
IUUC-Dno-029335	Dasypus novemcinctus	40.00	2.00e-85	309.00
IUUC-Dor-030520	Dipodomys ordii	31.00	2.00e-51	196.00
IUUC-Dse-031566	Dothistroma septosporum	37.33	4.00e-35	142.00
IUUC-Dme-031838	Drosophila melanogaster	38.40	4.00e-81	295.00
IUUC-Eca-033563	Equus caballus	40.93	6.00e-86	310.00
IUUC-Fca-036052	Felis catus	40.96	1.00e-84	306.00
IUUC-Fal-037080	Ficedula albicollis	42.18	4.00e-89	321.00
IUUC-Fox-038022	Fusarium oxysporum	40.40	5.00e-36	145.00
IUUC-Fso-038115	Fusarium solani	38.89	2.00e-34	140.00
IUUC-Gmo-039461	Gadus morhua	44.79	3.00e-69	254.00
IUUC-Gga-041133	Gallus gallus	41.44	1.00e-86	313.00
IUUC-Gac-041769	Gasterosteus aculeatus	42.43	1.00e-90	326.00
IUUC-Gma-043339	Glycine max	69.42	8.00e-172	596.00
IUUC-Ggo-044561	Gorilla gorilla	39.56	2.00e-86	312.00
IUUC-Hsa-046150	Homo sapiens	39.56	2.00e-86	312.00
IUUC-Hvu-047792	Hordeum vulgare	66.67	7.00e-109	385.00
IUUC-Itr-048630	Ictidomys tridecemlineatus	40.96	8.00e-86	310.00
IUUC-Kpa-049397	Komagataella pastoris	37.66	3.00e-73	268.00
IUUC-Lch-050365	Latimeria chalumnae	34.58	2.00e-58	219.00
IUUC-Lpe-050875	Leersia perrieri	54.12	6.00e-161	560.00
IUUC-Loc-052770	Lepisosteus oculatus	42.54	8.00e-91	327.00
IUUC-Lma-053291	Leptosphaeria maculans	38.27	4.00e-36	145.00
IUUC-Laf-053505	Loxodonta africana	40.96	1.00e-85	309.00
IUUC-Mcc-054803	Macaca mulatta	39.78	9.00e-87	313.00
IUUC-Meu-056578	Macropus eugenii	40.21	9.00e-37	147.00
IUUC-Mtr-058066	Medicago truncatula	69.63	2.00e-167	582.00
IUUC-Mga-059735	Meleagris gallopavo	41.69	5.00e-87	314.00
IUUC-Mmr-061343	Microcebus murinus	40.83	4.00e-85	308.00
IUUC-Mdo-062065	Monodelphis domestica	40.38	3.00e-84	305.00
IUUC-Mmu-063501	Mus musculus	40.00	7.00e-85	307.00
IUUC-Mac-064864	Musa acuminata	63.33	3.00e-173	600.00
IUUC-Mpu-066549	Mustela putorius furo	41.11	1.00e-86	313.00
IUUC-Mlu-067121	Myotis lucifugus	38.58	1.00e-86	313.00
IUUC-Nfi-068462	Neosartorya fischeri	40.10	7.00e-38	151.00
IUUC-Ncr-068838	Neurospora crassa	36.36	1.00e-32	134.00
IUUC-Nle-069854	Nomascus leucogenys	39.56	4.00e-86	311.00
IUUC-Opr-070803	Ochotona princeps	38.48	3.00e-75	275.00
IUUC-Ont-071642	Oreochromis niloticus	41.94	2.00e-90	326.00
IUUC-Oan-073675	Ornithorhynchus anatinus	40.94	1.00e-87	316.00
IUUC-Ocu-073863	Oryctolagus cuniculus	41.16	1.00e-83	302.00
IUUC-Oba-075682	Oryza barthii	52.83	5.00e-150	523.00
IUUC-Obr-076039	Oryza brachyantha	55.62	3.00e-159	554.00
IUUC-Ogu-078021	Oryza glumaepatula	65.64	3.00e-156	544.00
IUUC-Oin-079908	Oryza indica	55.95	2.00e-124	438.00
IUUC-Olo-081063	Oryza longistaminata	63.91	1.00e-156	545.00
IUUC-Ome-081930	Oryza meridionalis	54.39	9.00e-157	546.00
IUUC-Oni-082547	Oryza nivara	65.38	2.00e-155	541.00
IUUC-Opu-084089	Oryza punctata	66.84	8.00e-155	540.00
IUUC-Oru-084844	Oryza rufipogon	54.39	3.00e-156	544.00
IUUC-Osa-085582	Oryza sativa	54.39	3.00e-156	544.00
IUUC-Ola-087187	Oryzias latipes	42.18	2.00e-90	325.00
IUUC-Olu-087792	Ostreococcus lucimarinus	40.36	1.00e-79	289.00
IUUC-Oga-088390	Otolemur garnettii	38.89	5.00e-84	304.00
IUUC-Oar-089740	Ovis aries	38.04	3.00e-79	288.00
IUUC-Ptr-091581	Pan troglodytes	39.56	2.00e-86	312.00
IUUC-Pan-092258	Papio anubis	36.11	1.00e-73	270.00
IUUC-Psi-093761	Pelodiscus sinensis	36.17	1.00e-90	326.00
IUUC-Ppa-095428	Physcomitrella patens	54.29	1.00e-128	452.00
IUUC-Pfo-097357	Poecilia formosa	41.94	8.00e-90	323.00
IUUC-Pab-098520	Pongo abelii	39.56	5.00e-86	311.00
IUUC-Pop-099331	Populus trichocarpa	66.94	0.00e+00	667.00
IUUC-Ppe-101548	Prunus persica	59.28	0.00e+00	651.00
IUUC-Pva-103243	Pteropus vampyrus	39.22	2.00e-76	278.00
IUUC-Pte-104247	Pyrenophora teres	39.59	5.00e-37	148.00
IUUC-Pyt-104641	Pyrenophora triticirepentis	39.59	7.00e-37	148.00
IUUC-Rno-105202	Rattus norvegicus	39.81	6.00e-85	307.00
IUUC-Sce-106250	Saccharomyces cerevisiae	35.32	6.00e-69	254.00
IUUC-Sha-107036	Sarcophilus harrisii	38.14	1.00e-85	310.00
IUUC-Sja-107912	Schizosaccharomyces japonicus	35.11	3.00e-70	258.00
IUUC-Spo-108050	Schizosaccharomyces pombe	32.03	6.00e-60	224.00
IUUC-Ssl-108607	Sclerotinia sclerotiorum	38.46	9.00e-35	141.00
IUUC-Sit-109838	Setaria italica	55.45	1.00e-158	552.00
IUUC-Sly-110872	Solanum lycopersicum	63.24	7.00e-178	615.00
IUUC-Stu-111933	Solanum tuberosum	62.68	2.00e-176	610.00
IUUC-Sbi-114587	Sorghum bicolor	54.42	5.00e-159	553.00
IUUC-Ssc-115462	Sus scrofa	39.50	4.00e-86	311.00
IUUC-Tgu-117186	Taeniopygia guttata	42.18	4.00e-89	321.00
IUUC-Tru-118310	Takifugu rubripes	38.56	2.00e-89	322.00
IUUC-Tni-120832	Tetraodon nigroviridis	40.79	1.00e-87	317.00
IUUC-Tca-121584	Theobroma cacao	68.17	0.00e+00	685.00
IUUC-Tre-122140	Trichoderma reesei	38.89	1.00e-34	140.00
IUUC-Tvi-122663	Trichoderma virens	39.29	4.00e-35	142.00
IUUC-Tae-124063	Triticum aestivum	57.37	3.00e-164	570.00
IUUC-Tur-126239	Triticum urartu	57.17	2.00e-164	571.00
IUUC-Tme-127108	Tuber melanosporum	35.63	5.00e-66	244.00
IUUC-Ttr-129010	Tursiops truncatus	41.81	2.00e-85	309.00
IUUC-Vda-129825	Verticillium dahliae	36.55	1.00e-32	134.00
IUUC-Vpa-130374	Vicugna pacos	36.42	8.00e-25	107.00
IUUC-Vvi-131136	Vitis vinifera	74.44	0.00e+00	640.00
IUUC-Xtr-132141	Xenopus tropicalis	39.13	3.00e-86	311.00
IUUC-Xma-133980	Xiphophorus maculatus	42.68	1.00e-90	326.00
IUUC-Yli-134457	Yarrowia lipolytica	36.11	9.00e-31	127.00
IUUC-Zma-135321	Zea mays	58.69	1.00e-153	535.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence