iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sbi-114196

Ensembl Protein ID

Sb10g028100.1

UniProt Accession

A0A194YM72; A0A194YM72_SORBI

Genbank Protein ID

KXG20701.1

Protein Name

DNA repair protein REV1

Genbank Nucleotide ID

CM000769

Gene Name

SORBI_010G240800

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb10g028100	Sb10g028100.1	Sb10g028100.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
UBD/Alpha-Helix/UBM	24.62	3.00e-42	169.00	IUUC-Sce-106236

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Sorghum bicolor

Functional Description
(View)

Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template-dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents.

Protein Sequence
(Fasta)

MSSTSSARRA PSSSAAAASS PGQKRARDEA SSGSPSDPDP AKNPRRAFAS SPFADFGSYM 60
AAKNSKLAAQ FDADASISGA AAGCLFAGVS IFVDGFTVPS SQELKEIMLN NGGRFVNYFS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAGCTCCA CCTCCTCGGC CCGCCGCGCC CCCTCATCTT CGGCGGCGGC CGCCTCGTCT 60
CCAGGCCAGA AGCGGGCGAG GGATGAGGCC AGCAGCGGGT CCCCATCCGA CCCCGACCCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0237--DNA synthesis
KW-0238--DNA-binding
KW-0548--Nucleotidyltransferase
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR001357--BRCT_dom
IPR017961--DNA_pol_Y-fam_little_finger
IPR012112--REV1
IPR001126--UmuC

PROSITE

PS50172--BRCT
PS50173--UMUC

Pfam

PF16589--BRCT_2
PF00817--IMS
PF11799--IMS_C

SMART

SM00292--BRCT

Gene Ontology

GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0016779--F:nucleotidyltransferase activity
GO:0042276--P:error-prone translesion synthesis

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000375	Aegilops tauschii	54.89	0.00e+00	851.00
IUUC-Aml-001185	Ailuropoda melanoleuca	36.02	2.00e-73	270.00
IUUC-Atr-002915	Amborella trichopoda	40.83	2.00e-154	539.00
IUUC-Apl-004054	Anas platyrhynchos	30.17	3.00e-72	266.00
IUUC-Aca-004304	Anolis carolinensis	37.66	3.00e-78	286.00
IUUC-Aly-005696	Arabidopsis lyrata	43.18	9.00e-159	553.00
IUUC-Ath-006893	Arabidopsis thaliana	40.74	0.00e+00	655.00
IUUC-Ago-007722	Ashbya gossypii	27.88	3.00e-32	133.00
IUUC-Acl-008347	Aspergillus clavatus	28.84	4.00e-63	235.00
IUUC-Afl-008444	Aspergillus flavus	28.04	3.00e-59	223.00
IUUC-Afu-008837	Aspergillus fumigatus	29.19	8.00e-61	228.00
IUUC-Ani-009188	Aspergillus nidulans	27.75	1.00e-69	257.00
IUUC-Ang-009866	Aspergillus niger	27.04	5.00e-63	235.00
IUUC-Aor-010107	Aspergillus oryzae	28.04	2.00e-59	223.00
IUUC-Ate-010359	Aspergillus terreus	29.45	4.00e-60	226.00
IUUC-Ame-010664	Astyanax mexicanus	39.23	7.00e-77	281.00
IUUC-Bgr-012244	Blumeria graminis	32.62	4.00e-60	225.00
IUUC-Bta-013405	Bos taurus	36.60	1.00e-66	248.00
IUUC-Bci-013849	Botrytis cinerea	30.30	5.00e-58	219.00
IUUC-Bdi-014066	Brachypodium distachyon	60.45	0.00e+00	1184.00
IUUC-Bol-015544	Brassica oleracea	40.90	0.00e+00	659.00
IUUC-Bra-017792	Brassica rapa	42.55	3.00e-138	485.00
IUUC-Cel-018148	Caenorhabditis elegans	28.04	6.00e-46	178.00
IUUC-Cja-019742	Callithrix jacchus	34.40	1.00e-35	144.00
IUUC-Cfa-020112	Canis familiaris	42.72	4.00e-72	265.00
IUUC-Cpo-022152	Cavia porcellus	40.73	8.00e-69	254.00
IUUC-Cre-022951	Chlamydomonas reinhardtii	36.00	1.00e-49	190.00
IUUC-Csa-023504	Chlorocebus sabaeus	42.05	5.00e-66	245.00
IUUC-Cho-024780	Choloepus hoffmanni	40.38	6.00e-20	92.40
IUUC-Cin-025276	Ciona intestinalis	31.36	2.00e-84	306.00
IUUC-Csv-026283	Ciona savignyi	38.80	7.00e-58	218.00
IUUC-Cgl-026726	Colletotrichum gloeosporioides	27.33	3.00e-64	239.00
IUUC-Cne-027079	Cryptococcus neoformans	32.12	6.00e-47	182.00
IUUC-Cme-027346	Cyanidioschyzon merolae	25.96	1.00e-47	184.00
IUUC-Dre-028073	Danio rerio	44.14	1.00e-71	264.00
IUUC-Dno-030038	Dasypus novemcinctus	36.03	2.00e-73	270.00
IUUC-Dor-031100	Dipodomys ordii	34.62	2.00e-64	240.00
IUUC-Dse-031310	Dothistroma septosporum	29.60	5.00e-57	215.00
IUUC-Dme-031991	Drosophila melanogaster	37.54	3.00e-57	216.00
IUUC-Ete-033082	Echinops telfairi	34.01	1.00e-47	184.00
IUUC-Eca-033471	Equus caballus	36.69	1.00e-72	267.00
IUUC-Eeu-034993	Erinaceus europaeus	41.72	1.00e-64	241.00
IUUC-Fca-035367	Felis catus	35.67	9.00e-73	268.00
IUUC-Fal-036973	Ficedula albicollis	36.26	6.00e-68	252.00
IUUC-Fox-037677	Fusarium oxysporum	29.22	3.00e-58	219.00
IUUC-Fso-038252	Fusarium solani	28.77	6.00e-62	232.00
IUUC-Gmo-039669	Gadus morhua	37.14	5.00e-73	268.00
IUUC-Ggr-039988	Gaeumannomyces graminis	28.17	4.00e-55	209.00
IUUC-Gga-040423	Gallus gallus	30.49	4.00e-70	259.00
IUUC-Gac-042134	Gasterosteus aculeatus	43.71	1.00e-67	251.00
IUUC-Gma-042929	Glycine max	44.83	0.00e+00	645.00
IUUC-Ggo-044528	Gorilla gorilla	36.55	4.00e-68	252.00
IUUC-Hsa-046259	Homo sapiens	37.15	7.00e-68	251.00
IUUC-Hvu-047139	Hordeum vulgare	63.41	6.00e-143	499.00
IUUC-Itr-048621	Ictidomys tridecemlineatus	42.38	3.00e-71	263.00
IUUC-Kpa-049169	Komagataella pastoris	28.80	2.00e-46	180.00
IUUC-Lch-050471	Latimeria chalumnae	37.10	1.00e-73	271.00
IUUC-Lpe-050800	Leersia perrieri	64.14	0.00e+00	1306.00
IUUC-Loc-052320	Lepisosteus oculatus	32.36	7.00e-34	139.00
IUUC-Lma-053149	Leptosphaeria maculans	29.18	1.00e-57	218.00
IUUC-Laf-053810	Loxodonta africana	36.69	3.00e-70	259.00
IUUC-Mcc-055574	Macaca mulatta	41.69	5.00e-66	245.00
IUUC-Meu-055945	Macropus eugenii	38.28	1.00e-18	88.20
IUUC-Mor-057195	Magnaporthe oryzae	28.64	6.00e-57	215.00
IUUC-Mpo-057488	Magnaporthe poae	28.71	5.00e-55	209.00
IUUC-Mtr-057955	Medicago truncatula	43.96	0.00e+00	649.00
IUUC-Mla-059027	Melampsora laricipopulina	25.77	1.00e-46	180.00
IUUC-Mga-060156	Meleagris gallopavo	37.28	4.00e-69	256.00
IUUC-Mvi-060398	Microbotryum violaceum	28.81	2.00e-46	180.00
IUUC-Mmr-061113	Microcebus murinus	31.96	2.00e-67	250.00
IUUC-Mdo-063001	Monodelphis domestica	42.72	4.00e-68	253.00
IUUC-Mmu-063180	Mus musculus	41.18	5.00e-64	239.00
IUUC-Mac-065551	Musa acuminata	43.46	2.00e-142	498.00
IUUC-Mpu-066525	Mustela putorius furo	35.83	4.00e-73	269.00
IUUC-Mlu-067877	Myotis lucifugus	41.72	2.00e-65	243.00
IUUC-Nfi-068418	Neosartorya fischeri	28.97	6.00e-61	228.00
IUUC-Ncr-068648	Neurospora crassa	30.88	4.00e-60	226.00
IUUC-Nle-069959	Nomascus leucogenys	42.02	2.00e-67	250.00
IUUC-Opr-070522	Ochotona princeps	47.50	5.00e-51	196.00
IUUC-Ont-072293	Oreochromis niloticus	34.34	6.00e-65	242.00
IUUC-Oan-073519	Ornithorhynchus anatinus	42.38	3.00e-72	266.00
IUUC-Ocu-074492	Oryctolagus cuniculus	43.97	3.00e-69	256.00
IUUC-Oba-075567	Oryza barthii	64.62	0.00e+00	1311.00
IUUC-Obr-076332	Oryza brachyantha	62.30	0.00e+00	1203.00
IUUC-Ogl-077348	Oryza glaberrima	66.07	0.00e+00	1387.00
IUUC-Ogu-078779	Oryza glumaepatula	64.31	0.00e+00	1305.00
IUUC-Oin-079738	Oryza indica	65.23	0.00e+00	1352.00
IUUC-Olo-080701	Oryza longistaminata	65.28	0.00e+00	1345.00
IUUC-Ome-081708	Oryza meridionalis	63.00	0.00e+00	1242.00
IUUC-Oni-082251	Oryza nivara	64.04	0.00e+00	1295.00
IUUC-Opu-083528	Oryza punctata	64.81	0.00e+00	1337.00
IUUC-Oru-084293	Oryza rufipogon	63.85	0.00e+00	1286.00
IUUC-Osa-085549	Oryza sativa	65.89	0.00e+00	1385.00
IUUC-Ola-086793	Oryzias latipes	36.92	7.00e-73	268.00
IUUC-Olu-087786	Ostreococcus lucimarinus	29.76	5.00e-50	191.00
IUUC-Oga-089006	Otolemur garnettii	35.56	1.00e-67	251.00
IUUC-Oar-089597	Ovis aries	43.79	8.00e-73	268.00
IUUC-Ptr-091520	Pan troglodytes	36.36	4.00e-68	252.00
IUUC-Pan-092333	Papio anubis	41.69	6.00e-66	245.00
IUUC-Psi-094004	Pelodiscus sinensis	36.43	5.00e-70	258.00
IUUC-Pma-094128	Petromyzon marinus	49.61	1.00e-31	130.00
IUUC-Pno-094849	Phaeosphaeria nodorum	29.51	6.00e-53	202.00
IUUC-Ppa-095714	Physcomitrella patens	36.76	9.00e-127	447.00
IUUC-Pfo-096569	Poecilia formosa	36.14	2.00e-69	257.00
IUUC-Pab-097960	Pongo abelii	36.68	8.00e-68	251.00
IUUC-Pop-098921	Populus trichocarpa	43.20	2.00e-167	582.00
IUUC-Pca-100509	Procavia capensis	36.05	2.00e-39	157.00
IUUC-Ppe-101730	Prunus persica	43.20	3.00e-176	612.00
IUUC-Pva-102142	Pteropus vampyrus	43.38	2.00e-68	254.00
IUUC-Pgr-103446	Puccinia graminis	28.97	8.00e-35	141.00
IUUC-Ptt-103849	Puccinia triticina	27.88	5.00e-45	176.00
IUUC-Pte-104128	Pyrenophora teres	32.08	9.00e-61	228.00
IUUC-Pyt-104754	Pyrenophora triticirepentis	31.38	5.00e-59	222.00
IUUC-Rno-104871	Rattus norvegicus	29.35	5.00e-73	268.00
IUUC-Sce-106236	Saccharomyces cerevisiae	24.62	4.00e-43	169.00
IUUC-Sha-106962	Sarcophilus harrisii	42.38	2.00e-67	250.00
IUUC-Sja-107691	Schizosaccharomyces japonicus	30.81	3.00e-56	213.00
IUUC-Spo-108170	Schizosaccharomyces pombe	29.97	2.00e-57	216.00
IUUC-Ssl-108668	Sclerotinia sclerotiorum	30.18	3.00e-62	233.00
IUUC-Smo-109554	Selaginella moellendorffii	38.04	3.00e-136	479.00
IUUC-Sit-110479	Setaria italica	86.67	0.00e+00	1668.00
IUUC-Sly-111752	Solanum lycopersicum	39.93	0.00e+00	645.00
IUUC-Sar-113304	Sorex araneus	41.39	4.00e-68	252.00
IUUC-Sre-115151	Sporisorium reilianum	31.55	4.00e-46	179.00
IUUC-Ssc-116104	Sus scrofa	43.05	6.00e-67	248.00
IUUC-Tgu-117438	Taeniopygia guttata	36.55	2.00e-69	257.00
IUUC-Tru-118553	Takifugu rubripes	36.73	3.00e-68	253.00
IUUC-Tsy-119056	Tarsius syrichta	36.38	3.00e-66	246.00
IUUC-Tni-119933	Tetraodon nigroviridis	43.89	2.00e-70	260.00
IUUC-Tca-121376	Theobroma cacao	41.13	3.00e-177	615.00
IUUC-Tre-121972	Trichoderma reesei	25.15	3.00e-59	223.00
IUUC-Tvi-122342	Trichoderma virens	26.30	3.00e-57	216.00
IUUC-Tae-123898	Triticum aestivum	60.56	0.00e+00	983.00
IUUC-Tur-126735	Triticum urartu	54.77	0.00e+00	1002.00
IUUC-Tme-126999	Tuber melanosporum	30.28	1.00e-55	211.00
IUUC-Tbe-127280	Tupaia belangeri	47.66	1.00e-29	125.00
IUUC-Ttr-129104	Tursiops truncatus	43.05	2.00e-67	250.00
IUUC-Uma-129562	Ustilago maydis	33.93	8.00e-46	179.00
IUUC-Vda-129862	Verticillium dahliae	30.59	1.00e-63	238.00
IUUC-Vpa-130819	Vicugna pacos	46.88	2.00e-29	123.00
IUUC-Vvi-131111	Vitis vinifera	44.81	0.00e+00	650.00
IUUC-Xtr-132629	Xenopus tropicalis	33.96	7.00e-62	231.00
IUUC-Xma-134065	Xiphophorus maculatus	36.62	2.00e-69	257.00
IUUC-Yli-134633	Yarrowia lipolytica	28.54	3.00e-46	179.00
IUUC-Zma-135176	Zea mays	86.28	0.00e+00	1330.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence