iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ssc-116005

Ensembl Protein ID

ENSSSCP00000021516.1

UniProt Accession

F1S3L1; F1S3L1_PIG

Genbank Protein ID

ENSSSCP00000021516

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CT842131

Gene Name

DCAF4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSSCG00000028159.1	ENSSSCT00000025390.1	ENSSSCP00000021516.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.30e-06	27.2	369	406

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           H + vt+++  ++   l ++   gtik+WDlr +++++
   Q: 369  HDSAVTSVRIlQEeQCLMASDMAGTIKLWDLRNNKCVR 406
           9999*****98665556666677************987 PP

Organism

Sus scrofa

Protein Sequence
(Fasta)

MHKSSWHSRR RGRRSQQQNT WFRQPGSHER NNAGAQQSPQ GSSRSDDEAP STSSSSAGSS 60
SVPDLPGYYF DPEKNRYFRL LPGHNNCNPL TKESIRQKEM ESKRLQLLEE EDRQGKKIAR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTGCGACAAC ATGAAAACCG ACGCAACTAA CTGGCGGACG CTACGCCTCG GTCTTTCCGG 60
GTCCTTGCAC GCTTAGTCCC CACTTCTGCT GATCCTGGGC CCGAGGGAGA GCCGGAAGGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

SMART

SM00320--WD40

Gene Ontology

GO:0071013--C:catalytic step 2 spliceosome
GO:0071011--C:precatalytic spliceosome
GO:0005682--C:U5 snRNP
GO:0008380--P:RNA splicing

KEGG

ssc:100155352

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001176	Aegilops tauschii	39.36	4.00e-12	64.30
IUUC-Aml-001929	Ailuropoda melanoleuca	90.30	0.00e+00	849.00
IUUC-Atr-002556	Amborella trichopoda	29.41	2.00e-13	70.50
IUUC-Apl-003177	Anas platyrhynchos	72.08	7.00e-179	619.00
IUUC-Aca-004610	Anolis carolinensis	64.50	4.00e-177	613.00
IUUC-Aly-005883	Arabidopsis lyrata	25.28	3.00e-16	79.70
IUUC-Ath-006668	Arabidopsis thaliana	23.48	7.00e-18	85.10
IUUC-Afl-008573	Aspergillus flavus	21.00	1.00e-05	44.70
IUUC-Aor-010226	Aspergillus oryzae	21.29	8.00e-04	37.70
IUUC-Ate-010340	Aspergillus terreus	22.37	2.00e-09	57.00
IUUC-Ame-010690	Astyanax mexicanus	64.06	3.00e-157	548.00
IUUC-Bta-012668	Bos taurus	87.58	0.00e+00	805.00
IUUC-Bdi-014848	Brachypodium distachyon	34.23	7.00e-14	71.60
IUUC-Bol-016035	Brassica oleracea	33.54	7.00e-15	75.10
IUUC-Bra-016687	Brassica rapa	32.92	4.00e-14	72.40
IUUC-Cja-019560	Callithrix jacchus	82.39	4.00e-78	283.00
IUUC-Cfa-020441	Canis familiaris	91.40	0.00e+00	830.00
IUUC-Cpo-021299	Cavia porcellus	80.71	0.00e+00	793.00
IUUC-Csa-023185	Chlorocebus sabaeus	85.95	0.00e+00	818.00
IUUC-Cho-024353	Choloepus hoffmanni	83.40	0.00e+00	804.00
IUUC-Dno-029890	Dasypus novemcinctus	81.30	0.00e+00	749.00
IUUC-Dor-030618	Dipodomys ordii	89.56	3.00e-87	315.00
IUUC-Ete-032557	Echinops telfairi	68.99	2.00e-131	462.00
IUUC-Eca-033466	Equus caballus	89.24	0.00e+00	858.00
IUUC-Eeu-034995	Erinaceus europaeus	75.50	2.00e-152	531.00
IUUC-Fca-036199	Felis catus	89.52	0.00e+00	839.00
IUUC-Fal-036717	Ficedula albicollis	71.26	8.00e-175	606.00
IUUC-Gmo-039201	Gadus morhua	60.00	4.00e-153	534.00
IUUC-Gga-040398	Gallus gallus	72.52	1.00e-166	579.00
IUUC-Gac-042391	Gasterosteus aculeatus	60.46	3.00e-159	554.00
IUUC-Gma-042906	Glycine max	27.67	6.00e-11	62.00
IUUC-Ggo-045348	Gorilla gorilla	85.95	0.00e+00	822.00
IUUC-Hsa-046746	Homo sapiens	86.16	0.00e+00	827.00
IUUC-Hvu-047825	Hordeum vulgare	32.03	3.00e-14	72.80
IUUC-Itr-048472	Ictidomys tridecemlineatus	84.73	0.00e+00	804.00
IUUC-Lch-050272	Latimeria chalumnae	60.25	2.00e-152	532.00
IUUC-Lpe-051618	Leersia perrieri	28.66	1.00e-12	67.40
IUUC-Loc-051772	Lepisosteus oculatus	60.29	7.00e-166	576.00
IUUC-Laf-054577	Loxodonta africana	74.37	0.00e+00	646.00
IUUC-Mcc-055284	Macaca mulatta	90.25	2.00e-173	601.00
IUUC-Meu-056721	Macropus eugenii	63.57	3.00e-89	321.00
IUUC-Mtr-058472	Medicago truncatula	29.11	3.00e-13	69.70
IUUC-Mga-059238	Meleagris gallopavo	72.54	1.00e-168	585.00
IUUC-Mmr-061642	Microcebus murinus	91.25	0.00e+00	721.00
IUUC-Mdo-062030	Monodelphis domestica	72.06	0.00e+00	651.00
IUUC-Mmu-063420	Mus musculus	81.40	0.00e+00	787.00
IUUC-Mac-065231	Musa acuminata	33.58	1.00e-16	80.90
IUUC-Mpu-065692	Mustela putorius furo	90.32	0.00e+00	848.00
IUUC-Mlu-067428	Myotis lucifugus	86.64	0.00e+00	825.00
IUUC-Nle-070145	Nomascus leucogenys	85.95	0.00e+00	832.00
IUUC-Opr-071081	Ochotona princeps	84.56	0.00e+00	709.00
IUUC-Ont-071302	Oreochromis niloticus	61.52	2.00e-154	538.00
IUUC-Oan-073494	Ornithorhynchus anatinus	60.75	3.00e-129	455.00
IUUC-Ocu-073925	Oryctolagus cuniculus	86.41	0.00e+00	775.00
IUUC-Oba-075797	Oryza barthii	28.95	2.00e-12	66.60
IUUC-Obr-076014	Oryza brachyantha	30.26	1.00e-13	71.20
IUUC-Ogl-077201	Oryza glaberrima	28.95	3.00e-12	66.20
IUUC-Ogu-078056	Oryza glumaepatula	28.95	3.00e-12	66.60
IUUC-Oin-080062	Oryza indica	28.95	2.00e-12	66.60
IUUC-Olo-080869	Oryza longistaminata	28.95	2.00e-12	68.20
IUUC-Ome-081820	Oryza meridionalis	23.01	1.00e-14	74.30
IUUC-Oni-082497	Oryza nivara	22.42	3.00e-14	72.80
IUUC-Opu-083780	Oryza punctata	37.63	6.00e-11	63.20
IUUC-Oru-085091	Oryza rufipogon	28.95	2.00e-12	66.60
IUUC-Osa-085725	Oryza sativa	28.95	2.00e-12	66.60
IUUC-Ola-087033	Oryzias latipes	59.91	5.00e-142	497.00
IUUC-Oga-088861	Otolemur garnettii	85.53	0.00e+00	785.00
IUUC-Oar-090048	Ovis aries	90.21	0.00e+00	832.00
IUUC-Ptr-091658	Pan troglodytes	86.16	0.00e+00	827.00
IUUC-Pan-092873	Papio anubis	84.70	0.00e+00	826.00
IUUC-Psi-093421	Pelodiscus sinensis	70.45	5.00e-176	610.00
IUUC-Pma-094216	Petromyzon marinus	43.96	4.00e-91	328.00
IUUC-Ppa-095186	Physcomitrella patens	49.25	2.00e-10	60.80
IUUC-Pfo-096178	Poecilia formosa	59.95	2.00e-144	505.00
IUUC-Pab-098037	Pongo abelii	74.43	6.00e-171	593.00
IUUC-Pop-099334	Populus trichocarpa	31.06	7.00e-15	73.60
IUUC-Pca-100845	Procavia capensis	72.09	0.00e+00	679.00
IUUC-Pva-103203	Pteropus vampyrus	86.87	0.00e+00	839.00
IUUC-Rno-105675	Rattus norvegicus	82.49	0.00e+00	759.00
IUUC-Sha-107389	Sarcophilus harrisii	71.49	0.00e+00	667.00
IUUC-Sja-107847	Schizosaccharomyces japonicus	23.67	4.00e-13	68.90
IUUC-Spo-108190	Schizosaccharomyces pombe	24.67	3.00e-06	46.20
IUUC-Sit-110421	Setaria italica	29.44	3.00e-13	68.90
IUUC-Sly-110888	Solanum lycopersicum	23.63	6.00e-13	68.60
IUUC-Sar-113185	Sorex araneus	67.52	1.00e-163	568.00
IUUC-Sbi-114182	Sorghum bicolor	40.79	7.00e-13	66.60
IUUC-Tgu-117023	Taeniopygia guttata	68.51	1.00e-167	582.00
IUUC-Tru-118221	Takifugu rubripes	59.31	8.00e-149	520.00
IUUC-Tsy-118784	Tarsius syrichta	72.91	3.00e-176	610.00
IUUC-Tni-120072	Tetraodon nigroviridis	59.45	2.00e-150	525.00
IUUC-Tca-121267	Theobroma cacao	25.32	1.00e-16	81.30
IUUC-Tae-124900	Triticum aestivum	31.37	3.00e-14	71.60
IUUC-Tur-126655	Triticum urartu	31.37	4.00e-14	72.00
IUUC-Tbe-127243	Tupaia belangeri	75.89	0.00e+00	683.00
IUUC-Ttr-129237	Tursiops truncatus	95.49	0.00e+00	747.00
IUUC-Vvi-131184	Vitis vinifera	26.95	3.00e-10	60.10
IUUC-Xtr-132006	Xenopus tropicalis	50.46	1.00e-121	429.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence