iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pab-097582

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

ABGA01279146

Gene Name

KDM5D

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSPPYG00000020372.2	ENSPPYT00000023765.2	ENSPPYP00000022803.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	1.80e-11	44.1	326	372

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 3    vClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           vC +C +g+ed+ +l+ C+ C++++H  Cl ++  +e p+   w CpkC 
   Q: 326  VCRMCSRGDEDD-KLLLCDGCDDNYHIFCLLPP-LPEIPKGV-WRCPKCV 372
           8*********88.6*******************.*******8.******6 PP

Organism

Pongo abelii

Protein Sequence
(Fasta)

MEPGSDDFLP PPECPVFEPS WAEFRDPLGY IAKIRPIAEK SGICKIRPPA DWQPPFAVEV 60
DNFRFTPRIQ RLNELEAQTR VKLNYLDQIA KFWEIQGSSL KIPNVERRIL DLYSLSKIVV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAACGTGCAC CGCCGGTCCA TCCGGAAAGA GGATCCGGCA AACTAATTAC AATCTTGTTC 60
CTCCGCCGTT GCAATGAACT ATTTTCTCTC AGTCGGGGAT GGTACTTTTG AGTAACCTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001606--ARID_dom
IPR003347--JmjC_dom
IPR003349--JmjN
IPR013637--Lys_sp_deMease-like_dom
IPR019786--Zinc_finger_PHD-type_CS
IPR004198--Znf_C5HC2
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51011--ARID
PS51184--JMJC
PS51183--JMJN
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF01388--ARID
PF02373--JmjC
PF02375--JmjN
PF00628--PHD
PF08429--PLU-1
PF02928--zf-C5HC2

SMART

SM00501--BRIGHT
SM00558--JmjC
SM00545--JmjN
SM00249--PHD

Gene Ontology

GO:0005829--C:cytosol
GO:0005654--C:nucleoplasm
GO:0003677--F:DNA binding
GO:0032453--F:histone demethylase activity (H3-K4 specific)
GO:0016706--F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0008270--F:zinc ion binding
GO:0045892--P:negative regulation of transcription, DNA-templated

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001327	Ailuropoda melanoleuca	95.32	0.00e+00	2298.00
IUUC-Aca-004712	Anolis carolinensis	80.74	0.00e+00	1859.00
IUUC-Afl-008625	Aspergillus flavus	28.88	3.00e-133	470.00
IUUC-Afu-008796	Aspergillus fumigatus	31.26	6.00e-111	396.00
IUUC-Aor-010155	Aspergillus oryzae	28.88	4.00e-133	469.00
IUUC-Bta-013099	Bos taurus	95.36	0.00e+00	2308.00
IUUC-Bci-013992	Botrytis cinerea	31.02	2.00e-111	397.00
IUUC-Cja-018723	Callithrix jacchus	93.75	0.00e+00	2308.00
IUUC-Cfa-020954	Canis familiaris	95.21	0.00e+00	2319.00
IUUC-Cpo-021718	Cavia porcellus	79.91	0.00e+00	1866.00
IUUC-Csa-023946	Chlorocebus sabaeus	95.82	0.00e+00	2383.00
IUUC-Cne-026851	Cryptococcus neoformans	30.43	4.00e-106	380.00
IUUC-Dre-028238	Danio rerio	65.11	0.00e+00	1758.00
IUUC-Dno-029435	Dasypus novemcinctus	95.21	0.00e+00	2309.00
IUUC-Dor-030226	Dipodomys ordii	86.50	0.00e+00	1692.00
IUUC-Dse-031479	Dothistroma septosporum	29.46	1.00e-112	402.00
IUUC-Eca-033834	Equus caballus	95.21	0.00e+00	2335.00
IUUC-Eeu-034692	Erinaceus europaeus	93.26	0.00e+00	1664.00
IUUC-Fca-035766	Felis catus	91.95	0.00e+00	2202.00
IUUC-Fso-038127	Fusarium solani	30.57	2.00e-107	384.00
IUUC-Gmo-039140	Gadus morhua	69.48	0.00e+00	1624.00
IUUC-Gac-041825	Gasterosteus aculeatus	65.95	0.00e+00	1701.00
IUUC-Ggo-045492	Gorilla gorilla	96.20	0.00e+00	2393.00
IUUC-Hsa-046737	Homo sapiens	96.20	0.00e+00	2382.00
IUUC-Itr-048348	Ictidomys tridecemlineatus	95.21	0.00e+00	2367.00
IUUC-Lch-050517	Latimeria chalumnae	76.04	0.00e+00	1972.00
IUUC-Laf-054098	Loxodonta africana	91.17	0.00e+00	2153.00
IUUC-Mcc-055740	Macaca mulatta	95.97	0.00e+00	2386.00
IUUC-Meu-056643	Macropus eugenii	85.61	0.00e+00	2097.00
IUUC-Mmr-061032	Microcebus murinus	95.59	0.00e+00	2355.00
IUUC-Mdo-062754	Monodelphis domestica	81.96	0.00e+00	2017.00
IUUC-Mmu-063943	Mus musculus	94.45	0.00e+00	2339.00
IUUC-Mpu-066800	Mustela putorius furo	95.13	0.00e+00	2314.00
IUUC-Mlu-067109	Myotis lucifugus	94.45	0.00e+00	2297.00
IUUC-Nfi-068430	Neosartorya fischeri	32.15	6.00e-140	492.00
IUUC-Ncr-068763	Neurospora crassa	28.98	8.00e-137	482.00
IUUC-Nle-069569	Nomascus leucogenys	96.20	0.00e+00	2392.00
IUUC-Ont-072274	Oreochromis niloticus	68.30	0.00e+00	1753.00
IUUC-Oan-073160	Ornithorhynchus anatinus	86.20	0.00e+00	2108.00
IUUC-Ocu-074440	Oryctolagus cuniculus	95.29	0.00e+00	2323.00
IUUC-Oin-079273	Oryza indica	34.69	1.00e-13	69.30
IUUC-Ola-087059	Oryzias latipes	68.03	0.00e+00	1787.00
IUUC-Oga-088191	Otolemur garnettii	95.06	0.00e+00	2357.00
IUUC-Oar-090027	Ovis aries	95.44	0.00e+00	2308.00
IUUC-Ptr-091415	Pan troglodytes	86.66	0.00e+00	2129.00
IUUC-Pan-091829	Papio anubis	95.97	0.00e+00	2388.00
IUUC-Pfo-096645	Poecilia formosa	64.03	0.00e+00	1728.00
IUUC-Pca-100446	Procavia capensis	91.63	0.00e+00	2231.00
IUUC-Pva-102553	Pteropus vampyrus	91.49	0.00e+00	1568.00
IUUC-Rno-105359	Rattus norvegicus	81.09	0.00e+00	2144.00
IUUC-Sha-106769	Sarcophilus harrisii	84.90	0.00e+00	2050.00
IUUC-Ssl-108489	Sclerotinia sclerotiorum	31.00	9.00e-115	409.00
IUUC-Ssc-116354	Sus scrofa	95.59	0.00e+00	2352.00
IUUC-Tru-117667	Takifugu rubripes	63.71	0.00e+00	1594.00
IUUC-Tni-119920	Tetraodon nigroviridis	67.47	0.00e+00	1700.00
IUUC-Tre-122213	Trichoderma reesei	30.71	7.00e-111	395.00
IUUC-Tbe-128040	Tupaia belangeri	99.61	0.00e+00	1012.00
IUUC-Ttr-128979	Tursiops truncatus	95.44	0.00e+00	2338.00
IUUC-Vpa-130433	Vicugna pacos	95.86	0.00e+00	1716.00
IUUC-Xtr-132324	Xenopus tropicalis	71.54	0.00e+00	1824.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence