iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ssc-115574

Ensembl Protein ID

ENSSSCP00000027707.1

UniProt Accession

I3LUA8; I3LUA8_PIG

Protein Name

Uncharacterized protein

Gene Name

TNRC6C

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSSCG00000027734.1	ENSSSCT00000026949.1	ENSSSCP00000027707.1
ENSSSCG00000027734.1	ENSSSCT00000025059.1	ENSSSCP00000024446.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
UBD/Alpha-Helix/UBA	42.24	6.00e-29	127.00	IUUC-Dme-032014

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Sus scrofa

Protein Sequence
(Fasta)

MATGGAQGGF TGQTKKPNGN NGTSGALVHS PPGQSALGAA RAWGVAAGPG SGLAHCPLGG 60
GEGKLASVRA STSGAGINLN LNPNANPAAW PVLGHEGTVA TGNPSSICSP VSAIGHNVGT 120

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Nucleotide Sequence
(Fasta)

ATGGCTACAG GGGGTGCCCA GGGCGGCTTC ACTGGACAGA CCAAGAAGCC CAACGGCAAT 60
AATGGCACCA GCGGCGCCCT CGTCCACAGC CCTCCCGGCC AGAGTGCCCT CGGAGCGGGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR026805--GW182_M_dom
IPR012677--Nucleotide-bd_a/b_plait
IPR000504--RRM_dom
IPR032226--TNRC6_PABC-bd
IPR033499--TNRC6C
IPR015940--UBA
IPR009060--UBA-like

PROSITE

PS50030--UBA

Pfam

PF12938--M_domain
PF00076--RRM_1
PF16608--TNRC6-PABC_bdg

Gene Ontology

GO:0003676--F:nucleic acid binding
GO:0000166--F:nucleotide binding
GO:0035278--P:miRNA mediated inhibition of translation

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001985	Ailuropoda melanoleuca	35.60	4.00e-146	513.00
IUUC-Apl-003191	Anas platyrhynchos	65.94	0.00e+00	1507.00
IUUC-Aca-004717	Anolis carolinensis	67.22	0.00e+00	1493.00
IUUC-Ame-010681	Astyanax mexicanus	47.11	0.00e+00	645.00
IUUC-Bta-012915	Bos taurus	48.67	7.00e-80	292.00
IUUC-Cja-019614	Callithrix jacchus	71.51	0.00e+00	1553.00
IUUC-Cfa-020452	Canis familiaris	44.89	2.00e-82	301.00
IUUC-Cpo-021452	Cavia porcellus	71.30	0.00e+00	1626.00
IUUC-Csa-023169	Chlorocebus sabaeus	49.03	2.00e-82	301.00
IUUC-Cho-024655	Choloepus hoffmanni	49.83	1.00e-58	223.00
IUUC-Dre-028059	Danio rerio	51.57	0.00e+00	807.00
IUUC-Dno-029734	Dasypus novemcinctus	48.43	3.00e-79	291.00
IUUC-Dor-030671	Dipodomys ordii	48.18	6.00e-81	296.00
IUUC-Dme-032014	Drosophila melanogaster	34.27	3.00e-29	124.00
IUUC-Ete-032774	Echinops telfairi	68.62	0.00e+00	1113.00
IUUC-Eca-033866	Equus caballus	71.95	0.00e+00	1538.00
IUUC-Eeu-034572	Erinaceus europaeus	59.88	2.00e-36	149.00
IUUC-Fal-036856	Ficedula albicollis	64.34	0.00e+00	1363.00
IUUC-Gga-040531	Gallus gallus	68.18	0.00e+00	1478.00
IUUC-Gac-041681	Gasterosteus aculeatus	47.08	0.00e+00	686.00
IUUC-Ggo-045143	Gorilla gorilla	70.73	0.00e+00	1573.00
IUUC-Hsa-045913	Homo sapiens	70.75	0.00e+00	1552.00
IUUC-Lch-049619	Latimeria chalumnae	50.61	2.00e-81	298.00
IUUC-Loc-052289	Lepisosteus oculatus	63.22	0.00e+00	761.00
IUUC-Laf-053607	Loxodonta africana	70.22	0.00e+00	1576.00
IUUC-Mcc-055342	Macaca mulatta	70.45	0.00e+00	1514.00
IUUC-Meu-056275	Macropus eugenii	50.36	4.00e-82	300.00
IUUC-Mga-059241	Meleagris gallopavo	50.12	3.00e-84	307.00
IUUC-Mmr-061348	Microcebus murinus	49.03	2.00e-82	301.00
IUUC-Mdo-062155	Monodelphis domestica	67.58	0.00e+00	1542.00
IUUC-Mmu-064259	Mus musculus	49.03	4.00e-82	300.00
IUUC-Mpu-066534	Mustela putorius furo	49.55	1.00e-71	265.00
IUUC-Mlu-067834	Myotis lucifugus	50.84	4.00e-86	313.00
IUUC-Nle-069168	Nomascus leucogenys	46.97	2.00e-76	281.00
IUUC-Opr-070976	Ochotona princeps	36.04	2.00e-60	228.00
IUUC-Ocu-074534	Oryctolagus cuniculus	71.72	4.00e-153	536.00
IUUC-Oga-088116	Otolemur garnettii	49.28	2.00e-83	304.00
IUUC-Oar-090041	Ovis aries	48.67	6.00e-80	293.00
IUUC-Ptr-091135	Pan troglodytes	68.76	0.00e+00	1503.00
IUUC-Pan-092665	Papio anubis	68.64	0.00e+00	1487.00
IUUC-Psi-093057	Pelodiscus sinensis	66.92	0.00e+00	1465.00
IUUC-Pma-094508	Petromyzon marinus	54.39	1.00e-50	194.00
IUUC-Pfo-097115	Poecilia formosa	46.92	6.00e-151	528.00
IUUC-Pab-097935	Pongo abelii	49.03	2.00e-82	301.00
IUUC-Pca-100481	Procavia capensis	57.94	9.00e-176	611.00
IUUC-Pva-102376	Pteropus vampyrus	43.72	2.00e-54	208.00
IUUC-Rno-105508	Rattus norvegicus	48.67	3.00e-82	300.00
IUUC-Sar-113036	Sorex araneus	58.68	1.00e-37	152.00
IUUC-Tgu-117233	Taeniopygia guttata	67.52	0.00e+00	1412.00
IUUC-Tru-117725	Takifugu rubripes	49.84	0.00e+00	749.00
IUUC-Tsy-118786	Tarsius syrichta	46.35	3.00e-49	191.00
IUUC-Tbe-127989	Tupaia belangeri	65.36	2.00e-151	530.00
IUUC-Ttr-128518	Tursiops truncatus	72.50	0.00e+00	1666.00
IUUC-Vpa-130230	Vicugna pacos	44.69	7.00e-63	236.00
IUUC-Xtr-132265	Xenopus tropicalis	60.38	0.00e+00	1267.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence