iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Atr-002544

Ensembl Protein ID

ERN12335

UniProt Accession

W1PXZ7; W1PXZ7_AMBTC

Genbank Protein ID

ERN12335.1

Protein Name

Ribosome biogenesis protein WDR12 homolog

Genbank Nucleotide ID

KI392614

Gene Name

AMTR_s00025p00071700

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AMTR_s00025p00071700	ERN12335	ERN12335

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.70e-31	107.4	358	392

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDlrtg 33
           H +++t++++   +  +lvs+s+Dg++++WDlr +
   Q: 358  HRSWITACKWhpRSwFHLVSSSHDGKVMLWDLRAQ 392
           9**********844477**************9875 PP

Organism

Amborella trichopoda

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MEIDGGEAAR QVRVRFITKL PHTLRVSSAS ITLPSDVTRA QLSNVVNTLL NTGEHEVFDF 60
IVDGELVRVP LEKILIAKGI SAEKVLDIEY FRAVAPRRQQ EPELHEDWVS AVDGSNPSVI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAGATTG ATGGAGGGGA AGCGGCTCGG CAGGTCCGAG TCCGTTTCAT CACGAAGCTC 60
CCCCATACTC TCCGAGTCTC ATCCGCTTCA ATAACCCTTC CGTCCGATGT CACTCGAGCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0009506--C:plasmodesma
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

atr:18440552

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	61.06	1.00e-156	545.00
IUUC-Aml-001997	Ailuropoda melanoleuca	33.01	1.00e-53	202.00
IUUC-Apl-003981	Anas platyrhynchos	33.33	3.00e-52	197.00
IUUC-Aca-004370	Anolis carolinensis	33.81	1.00e-60	226.00
IUUC-Aly-006455	Arabidopsis lyrata	57.53	1.00e-151	528.00
IUUC-Ath-006669	Arabidopsis thaliana	57.99	5.00e-149	519.00
IUUC-Ago-007864	Ashbya gossypii	28.79	6.00e-44	170.00
IUUC-Acl-008177	Aspergillus clavatus	28.12	8.00e-38	150.00
IUUC-Afl-008617	Aspergillus flavus	27.85	1.00e-36	145.00
IUUC-Afu-008752	Aspergillus fumigatus	27.65	5.00e-37	147.00
IUUC-Ani-009136	Aspergillus nidulans	28.53	1.00e-37	149.00
IUUC-Ang-009701	Aspergillus niger	28.17	3.00e-36	144.00
IUUC-Aor-009884	Aspergillus oryzae	27.85	5.00e-37	147.00
IUUC-Ame-011432	Astyanax mexicanus	32.86	1.00e-59	222.00
IUUC-Bgr-012218	Blumeria graminis	29.16	2.00e-34	139.00
IUUC-Bta-012829	Bos taurus	32.86	1.00e-54	206.00
IUUC-Bci-013953	Botrytis cinerea	26.63	2.00e-36	145.00
IUUC-Bdi-014351	Brachypodium distachyon	61.24	1.00e-154	538.00
IUUC-Bol-016514	Brassica oleracea	60.14	3.00e-145	506.00
IUUC-Bra-016988	Brassica rapa	60.37	7.00e-146	508.00
IUUC-Cel-018569	Caenorhabditis elegans	22.10	2.00e-22	99.40
IUUC-Cja-019468	Callithrix jacchus	33.33	1.00e-52	199.00
IUUC-Cfa-020471	Canis familiaris	32.62	6.00e-53	200.00
IUUC-Cpo-022260	Cavia porcellus	33.33	8.00e-54	203.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	34.25	1.00e-57	215.00
IUUC-Csa-023989	Chlorocebus sabaeus	33.10	1.00e-52	199.00
IUUC-Cho-024426	Choloepus hoffmanni	32.18	1.00e-39	155.00
IUUC-Cin-025789	Ciona intestinalis	30.37	1.00e-51	196.00
IUUC-Cne-027063	Cryptococcus neoformans	27.64	5.00e-27	114.00
IUUC-Dre-027907	Danio rerio	34.52	5.00e-61	227.00
IUUC-Dno-029225	Dasypus novemcinctus	33.02	5.00e-54	203.00
IUUC-Dor-031082	Dipodomys ordii	26.30	4.00e-27	114.00
IUUC-Dse-031308	Dothistroma septosporum	30.08	5.00e-40	157.00
IUUC-Dme-032189	Drosophila melanogaster	29.66	3.00e-44	171.00
IUUC-Ete-032247	Echinops telfairi	31.43	4.00e-47	181.00
IUUC-Eca-034285	Equus caballus	32.86	8.00e-54	202.00
IUUC-Eeu-035322	Erinaceus europaeus	30.12	1.00e-44	172.00
IUUC-Fca-036114	Felis catus	32.62	6.00e-54	203.00
IUUC-Fal-036891	Ficedula albicollis	33.13	2.00e-47	181.00
IUUC-Fox-037965	Fusarium oxysporum	24.26	3.00e-27	115.00
IUUC-Fso-038244	Fusarium solani	24.03	2.00e-26	112.00
IUUC-Gmo-039040	Gadus morhua	33.57	7.00e-62	229.00
IUUC-Ggr-040093	Gaeumannomyces graminis	25.06	4.00e-22	97.80
IUUC-Gga-040610	Gallus gallus	32.86	8.00e-56	209.00
IUUC-Gac-042117	Gasterosteus aculeatus	33.81	4.00e-61	227.00
IUUC-Gma-043425	Glycine max	60.23	1.00e-155	541.00
IUUC-Ggo-045179	Gorilla gorilla	32.86	3.00e-52	197.00
IUUC-Hsa-046114	Homo sapiens	33.10	7.00e-53	200.00
IUUC-Hvu-047331	Hordeum vulgare	61.96	3.00e-138	483.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	32.62	1.00e-54	206.00
IUUC-Kpa-049304	Komagataella pastoris	27.31	3.00e-41	161.00
IUUC-Lch-050655	Latimeria chalumnae	30.86	1.00e-40	159.00
IUUC-Lpe-051675	Leersia perrieri	62.30	2.00e-160	557.00
IUUC-Loc-052868	Lepisosteus oculatus	32.94	2.00e-59	221.00
IUUC-Lma-053258	Leptosphaeria maculans	30.28	1.00e-36	148.00
IUUC-Laf-053993	Loxodonta africana	33.10	1.00e-54	205.00
IUUC-Mcc-055128	Macaca mulatta	26.62	3.00e-32	131.00
IUUC-Meu-056501	Macropus eugenii	34.53	3.00e-45	174.00
IUUC-Mor-057114	Magnaporthe oryzae	28.03	1.00e-36	146.00
IUUC-Mtr-058367	Medicago truncatula	58.49	3.00e-144	503.00
IUUC-Mla-059107	Melampsora laricipopulina	26.18	2.00e-32	132.00
IUUC-Mga-059745	Meleagris gallopavo	32.51	1.00e-53	202.00
IUUC-Mvi-060362	Microbotryum violaceum	23.97	2.00e-28	119.00
IUUC-Mdo-062257	Monodelphis domestica	34.05	1.00e-58	219.00
IUUC-Mmu-063546	Mus musculus	32.62	3.00e-55	207.00
IUUC-Mac-065540	Musa acuminata	63.29	2.00e-157	547.00
IUUC-Mpu-066284	Mustela putorius furo	32.86	1.00e-54	206.00
IUUC-Mlu-067241	Myotis lucifugus	33.33	4.00e-55	207.00
IUUC-Nfi-068260	Neosartorya fischeri	28.64	2.00e-39	155.00
IUUC-Ncr-068719	Neurospora crassa	27.25	2.00e-30	125.00
IUUC-Nle-068981	Nomascus leucogenys	33.33	1.00e-52	199.00
IUUC-Opr-071218	Ochotona princeps	31.03	6.00e-49	186.00
IUUC-Ont-071646	Oreochromis niloticus	33.33	4.00e-57	214.00
IUUC-Oan-073453	Ornithorhynchus anatinus	32.38	3.00e-60	224.00
IUUC-Ocu-074008	Oryctolagus cuniculus	32.86	6.00e-55	206.00
IUUC-Oba-075712	Oryza barthii	53.60	3.00e-126	443.00
IUUC-Obr-076721	Oryza brachyantha	61.72	7.00e-160	555.00
IUUC-Ogl-077229	Oryza glaberrima	62.88	1.00e-161	561.00
IUUC-Ogu-078977	Oryza glumaepatula	53.83	9.00e-127	445.00
IUUC-Oin-079683	Oryza indica	63.57	1.00e-163	568.00
IUUC-Olo-080291	Oryza longistaminata	54.64	4.00e-90	323.00
IUUC-Ome-081834	Oryza meridionalis	64.02	9.00e-164	568.00
IUUC-Oni-082507	Oryza nivara	60.96	3.00e-153	533.00
IUUC-Opu-083396	Oryza punctata	62.41	5.00e-163	566.00
IUUC-Oru-085220	Oryza rufipogon	60.73	3.00e-153	533.00
IUUC-Osa-085767	Oryza sativa	63.57	1.00e-163	568.00
IUUC-Ola-087420	Oryzias latipes	34.29	5.00e-63	233.00
IUUC-Olu-087740	Ostreococcus lucimarinus	32.15	4.00e-57	214.00
IUUC-Oga-088264	Otolemur garnettii	32.38	1.00e-53	202.00
IUUC-Oar-089335	Ovis aries	33.10	8.00e-56	209.00
IUUC-Ptr-091320	Pan troglodytes	33.10	7.00e-53	200.00
IUUC-Pan-092833	Papio anubis	33.10	1.00e-52	199.00
IUUC-Psi-093504	Pelodiscus sinensis	32.30	4.00e-53	201.00
IUUC-Pma-094189	Petromyzon marinus	35.05	7.00e-57	213.00
IUUC-Pno-094929	Phaeosphaeria nodorum	28.71	9.00e-34	136.00
IUUC-Ppa-095429	Physcomitrella patens	50.12	5.00e-121	426.00
IUUC-Pfo-096337	Poecilia formosa	33.81	2.00e-62	232.00
IUUC-Pab-097571	Pongo abelii	32.62	1.00e-52	199.00
IUUC-Pop-099977	Populus trichocarpa	60.50	6.00e-155	539.00
IUUC-Pca-100394	Procavia capensis	30.86	1.00e-44	172.00
IUUC-Ppe-101848	Prunus persica	61.24	5.00e-158	549.00
IUUC-Pva-102921	Pteropus vampyrus	30.09	3.00e-21	95.10
IUUC-Pgr-103637	Puccinia graminis	25.42	9.00e-30	123.00
IUUC-Ptt-103781	Puccinia triticina	24.47	2.00e-29	122.00
IUUC-Pte-104135	Pyrenophora teres	30.77	3.00e-35	143.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	29.51	7.00e-37	147.00
IUUC-Rno-105114	Rattus norvegicus	31.90	3.00e-54	204.00
IUUC-Sce-106401	Saccharomyces cerevisiae	27.56	2.00e-40	159.00
IUUC-Sha-107122	Sarcophilus harrisii	35.06	2.00e-57	215.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	26.79	2.00e-36	145.00
IUUC-Spo-108134	Schizosaccharomyces pombe	26.65	5.00e-32	130.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	27.60	2.00e-37	149.00
IUUC-Smo-108720	Selaginella moellendorffii	48.22	3.00e-116	410.00
IUUC-Sit-110354	Setaria italica	62.50	1.00e-160	558.00
IUUC-Sly-111023	Solanum lycopersicum	57.51	5.00e-146	509.00
IUUC-Stu-112778	Solanum tuberosum	62.50	1.00e-154	538.00
IUUC-Sar-113596	Sorex araneus	30.11	3.00e-41	161.00
IUUC-Sbi-114193	Sorghum bicolor	62.12	2.00e-153	533.00
IUUC-Sre-115002	Sporisorium reilianum	26.72	3.00e-14	72.00
IUUC-Ssc-116066	Sus scrofa	33.33	2.00e-55	208.00
IUUC-Tgu-117048	Taeniopygia guttata	33.42	1.00e-51	196.00
IUUC-Tsy-119573	Tarsius syrichta	22.41	6.00e-17	80.50
IUUC-Tni-119820	Tetraodon nigroviridis	35.24	3.00e-61	227.00
IUUC-Tca-121605	Theobroma cacao	61.09	5.00e-157	546.00
IUUC-Tre-121947	Trichoderma reesei	24.34	5.00e-30	124.00
IUUC-Tvi-122481	Trichoderma virens	24.28	2.00e-29	122.00
IUUC-Tae-123847	Triticum aestivum	61.06	1.00e-156	545.00
IUUC-Tur-126586	Triticum urartu	62.31	3.00e-145	506.00
IUUC-Tme-126900	Tuber melanosporum	30.63	8.00e-46	176.00
IUUC-Tbe-127736	Tupaia belangeri	30.99	4.00e-20	91.30
IUUC-Ttr-129041	Tursiops truncatus	28.10	5.00e-39	154.00
IUUC-Uma-129628	Ustilago maydis	23.44	2.00e-08	53.10
IUUC-Vpa-130260	Vicugna pacos	33.10	1.00e-55	209.00
IUUC-Vvi-131009	Vitis vinifera	64.77	7.00e-167	578.00
IUUC-Xtr-132083	Xenopus tropicalis	34.29	3.00e-57	214.00
IUUC-Xma-133094	Xiphophorus maculatus	33.33	4.00e-61	227.00
IUUC-Yli-134531	Yarrowia lipolytica	26.46	3.00e-28	118.00
IUUC-Zma-135509	Zea mays	62.73	5.00e-159	552.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence