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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Mmu-064127
Ensembl Protein ID ENSMUSP00000150937.1
UniProt Accession Q9D4V4; Q149X7; Q8C7I5; Q9CZG0; Q9D5U6; TAF1D_MOUSE
Genbank Protein ID BAC34104.1; BAB28391.1; BAB29621.1; BAB30118.1; BAE38709.1; AAI10661.1; AAI17069.1; AAI17071.1
Protein Name TATA box-binding protein-associated factor RNA polymerase I subunit D; TATA box-binding protein-associated factor 1D; Transcription initiation factor SL1/TIF-IB subunit D
Genbank Nucleotide ID AK050165; AK012662; AK014920; AK016109; AK166329; BC110660; BC117068; BC117070
Gene Name Taf1d; Josd3
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSMUSG00000031939.16 ENSMUST00000034415.5 ENSMUSP00000034415.5
ENSMUSG00000031939.16 ENSMUST00000214054.1 ENSMUSP00000150937.1
ENSMUSG00000031939.16 ENSMUST00000164079.8 ENSMUSP00000129141.1
ENSMUSG00000031939.16 ENSMUST00000215749.1 ENSMUSP00000150491.1
ENSMUSG00000031939.16 ENSMUST00000214316.1 ENSMUSP00000149380.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpressGXD
DNA & RNA Element
microRNATRANSFACRepTarRAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
dbPAFPhosphositePlusdbPTM
Protein Expression/Proteomics
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
DUB/Other 52.65 1.00e-48 191.00 IUUC-Hsa-046930
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Mus musculus
Functional Description
(View)

Functional Description



     Component of the transcription factor SL1/TIF-IB complex, which is involved in the assembly of the PIC (preinitiation complex) during RNA polymerase I-dependent transcription. The rate of PIC formation probably is primarily dependent on the rate of association of SL1/TIF-IB with the rDNA promoter. SL1/TIF-IB is involved in stabilization of nucleolar transcription factor 1/UBTF on rDNA. Formation of SL1/TIF-IB excludes the association of TBP with TFIID subunits (By similarity).
Component of the transcription factor SL1/TIF-IB complex, which is involved in the assembly of the PIC (preinitiation complex) during RNA polymerase I-dependent transcription. The rate of PIC formation probably is primarily dependent on the rate of association of SL1/TIF-IB with the rDNA promoter. SL1/TIF-IB is involved in stabilization of nucleolar transcription factor 1/UBTF on rDNA. Formation of SL1/TIF-IB excludes the association of TBP with TFIID subunits (By similarity).
Protein Sequence
(Fasta)
MAQSEVNSVC VASDRAGDTG DQSDDSSDGS LFKTQCAPSP IQKQRHPTVK RVTLPASVET 60
DSSSDSSIEP RPLTLKAIFE RFKKKKRKKR KKRKYEPKLR PRGRPRGKPS GTRITRRSQI 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Mmu-064127|DUB,DUB/Other|Mus musculus
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Nucleotide Sequence
(Fasta)
GCGAGATTTC GTCCTTGTCC TAGTCCGGCT GCTGGGCGCC GGGAGCGCTC TTTTCGACGC 60
GGCGGAAGAG GTAAGCGGTT GTTCACTGTG GCCGCTCAGG TCTGCTGCGG GCGACGGGGC 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Mmu-064127|DUB,DUB/Other|Mus musculus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0238--DNA-binding
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR027976--TAF1D

Pfam

PF15333--TAF1D

Gene Ontology

GO:0005815--C:microtubule organizing center
GO:0005654--C:nucleoplasm
GO:0005668--C:RNA polymerase transcription factor SL1 complex
GO:0003677--F:DNA binding
GO:0000183--P:chromatin silencing at rDNA
GO:0006361--P:transcription initiation from RNA polymerase I promoter

KEGG mmu:75316
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001853 Ailuropoda melanoleuca 66.67 7.00e-53 200.00
IUUC-Apl-003575 Anas platyrhynchos 47.75 8.00e-27 114.00
IUUC-Aca-004568 Anolis carolinensis 48.46 8.00e-30 123.00
IUUC-Bta-013078 Bos taurus 61.60 5.00e-45 174.00
IUUC-Cja-019808 Callithrix jacchus 50.88 3.00e-47 181.00
IUUC-Cfa-020525 Canis familiaris 60.08 8.00e-47 180.00
IUUC-Cpo-021896 Cavia porcellus 67.67 1.00e-56 213.00
IUUC-Csa-024108 Chlorocebus sabaeus 54.55 4.00e-52 197.00
IUUC-Cho-024326 Choloepus hoffmanni 56.60 2.00e-48 185.00
IUUC-Dno-029104 Dasypus novemcinctus 61.32 6.00e-57 213.00
IUUC-Dor-030151 Dipodomys ordii 64.02 3.00e-54 204.00
IUUC-Ete-033189 Echinops telfairi 58.57 5.00e-57 214.00
IUUC-Eca-034238 Equus caballus 65.40 1.00e-59 223.00
IUUC-Fca-035711 Felis catus 64.41 2.00e-51 196.00
IUUC-Fal-037067 Ficedula albicollis 46.55 1.00e-24 105.00
IUUC-Gga-040782 Gallus gallus 46.88 6.00e-29 121.00
IUUC-Ggo-045155 Gorilla gorilla 52.30 2.00e-50 192.00
IUUC-Hsa-046930 Homo sapiens 52.65 2.00e-50 192.00
IUUC-Loc-052935 Lepisosteus oculatus 34.23 4.00e-07 50.10
IUUC-Laf-054040 Loxodonta africana 63.93 3.00e-60 224.00
IUUC-Mga-059429 Meleagris gallopavo 48.70 3.00e-29 122.00
IUUC-Mmr-061505 Microcebus murinus 55.76 2.00e-63 235.00
IUUC-Mdo-062193 Monodelphis domestica 49.32 2.00e-35 142.00
IUUC-Mpu-065682 Mustela putorius furo 62.05 8.00e-48 183.00
IUUC-Mlu-067425 Myotis lucifugus 68.58 3.00e-65 241.00
IUUC-Nle-069897 Nomascus leucogenys 52.65 1.00e-52 199.00
IUUC-Opr-071021 Ochotona princeps 57.02 3.00e-54 204.00
IUUC-Oan-072853 Ornithorhynchus anatinus 47.92 7.00e-33 136.00
IUUC-Ocu-074088 Oryctolagus cuniculus 55.13 1.00e-52 199.00
IUUC-Oga-089058 Otolemur garnettii 55.09 1.00e-53 202.00
IUUC-Oar-089404 Ovis aries 61.44 2.00e-45 175.00
IUUC-Ptr-091491 Pan troglodytes 53.19 1.00e-51 196.00
IUUC-Pan-092706 Papio anubis 54.55 5.00e-52 197.00
IUUC-Psi-093986 Pelodiscus sinensis 44.68 4.00e-28 118.00
IUUC-Pab-097567 Pongo abelii 52.30 3.00e-53 201.00
IUUC-Pva-103062 Pteropus vampyrus 68.63 4.00e-58 217.00
IUUC-Rno-105375 Rattus norvegicus 80.97 5.00e-101 360.00
IUUC-Sha-106880 Sarcophilus harrisii 46.58 7.00e-43 167.00
IUUC-Ssc-115335 Sus scrofa 51.52 2.00e-17 80.90
IUUC-Tgu-117094 Taeniopygia guttata 49.06 1.00e-24 105.00
IUUC-Tsy-119189 Tarsius syrichta 61.80 1.00e-48 186.00
IUUC-Tbe-128047 Tupaia belangeri 55.88 2.00e-57 215.00
IUUC-Ttr-128715 Tursiops truncatus 64.41 9.00e-65 239.00
IUUC-Vpa-130195 Vicugna pacos 58.96 8.00e-63 233.00
Created Date 25-Jun-2017

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