iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Aly-005671

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Guanine nucleotide-binding family protein

Genbank Nucleotide ID

GL348715

Gene Name

RACK1C_AT; ARALYDRAFT_898165

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
scaffold_302135.1	scaffold_302135.1	scaffold_302135.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.10e-45	150.8	148	183
UBD/Beta-Prp	4.80e-55	187.5	11	161

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd..tllvsGsdDgtikvWDlrt 32
           gH+++++c++f  ++  +++vs+s+D+t+kvW+l  
   Q: 148  GHKEWISCVRFspNTlvPTIVSASWDHTVKVWNLQN 183
           8***********5446667**************865 PP

UBD/Beta-Prp

   S: 6    kghhksvitcvkf.spdksllatgsrdgtikvwdvttgkl.....lrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlk 91
           + +h++ +t+++  ++++++++t+srd++i++w++t+ ++      r+l gh+ +v +v +s+dg++ ++gs D+ +++wdl tg  ++ + 
   Q: 11   MRAHTDMVTAIATpIDNSDIIVTASRDKSIILWKLTKDDKsygvaQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLATGVSTRRFV 102
           6789999999*999***********************999999999********************************************** PP
   S: 92   ghedsvlslsfspsgdklvsGshdrtirvwdletgqclee...tlsghdgvvncvvvhpd 148
           gh+++vls++fs ++  +vs+s+drti++w++  + c ++     +gh+++++cv+++p+
   Q: 103  GHTKDVLSVAFSVDNRQIVSASRDRTIKLWNTLGE-CKYTiseQGDGHKEWISCVRFSPN 161
           ******************************87543.33333448899**********995 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MAEGLVLKGT MRAHTDMVTA IATPIDNSDI IVTASRDKSI ILWKLTKDDK SYGVAQRRLT 60
GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLATGVSTRR FVGHTKDVLS VAFSVDNRQI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGCTCTGTTA CGCCATTTTC GTGAGTAAGA AGAAGAAACC CTAAGAGTCT CTCCCCCAAA 60
ACCTCAAACC ATGGCCGAGG GACTCGTATT GAAGGGCACT ATGCGCGCCC ACACCGACAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR027295--Quinoprotein_ADH-like_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0071215--P:cellular response to abscisic acid stimulus
GO:0009967--P:positive regulation of signal transduction
GO:0048364--P:root development
GO:0009845--P:seed germination
GO:0048367--P:shoot system development

KEGG

aly:ARALYDRAFT_898165

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000395	Aegilops tauschii	72.76	6.00e-121	426.00
IUUC-Aml-001935	Ailuropoda melanoleuca	65.43	4.00e-125	439.00
IUUC-Apl-003918	Anas platyrhynchos	68.06	2.00e-115	407.00
IUUC-Aca-004869	Anolis carolinensis	65.43	4.00e-125	439.00
IUUC-Ath-007105	Arabidopsis thaliana	96.02	0.00e+00	635.00
IUUC-Ame-010884	Astyanax mexicanus	64.81	6.00e-125	439.00
IUUC-Bta-013357	Bos taurus	65.43	4.00e-125	439.00
IUUC-Bol-016231	Brassica oleracea	95.41	0.00e+00	632.00
IUUC-Bra-016879	Brassica rapa	95.11	0.00e+00	627.00
IUUC-Cja-019914	Callithrix jacchus	65.43	4.00e-125	439.00
IUUC-Cfa-020755	Canis familiaris	65.43	4.00e-125	439.00
IUUC-Cpo-022377	Cavia porcellus	65.43	3.00e-125	440.00
IUUC-Csa-023025	Chlorocebus sabaeus	65.43	3.00e-125	441.00
IUUC-Dre-028669	Danio rerio	65.12	3.00e-125	440.00
IUUC-Dno-029470	Dasypus novemcinctus	55.25	4.00e-92	330.00
IUUC-Dor-031098	Dipodomys ordii	57.72	1.00e-91	328.00
IUUC-Eca-033296	Equus caballus	68.67	2.00e-59	220.00
IUUC-Eeu-034771	Erinaceus europaeus	62.96	6.00e-119	419.00
IUUC-Fca-036315	Felis catus	65.43	4.00e-125	439.00
IUUC-Gmo-039630	Gadus morhua	65.00	2.00e-123	434.00
IUUC-Gga-040540	Gallus gallus	65.43	4.00e-125	439.00
IUUC-Gac-041316	Gasterosteus aculeatus	63.66	3.00e-122	430.00
IUUC-Gma-042872	Glycine max	86.85	1.00e-168	584.00
IUUC-Ggo-045253	Gorilla gorilla	65.43	4.00e-125	439.00
IUUC-Hsa-046809	Homo sapiens	65.43	4.00e-125	439.00
IUUC-Itr-048025	Ictidomys tridecemlineatus	65.43	4.00e-125	439.00
IUUC-Lch-049634	Latimeria chalumnae	64.20	4.00e-123	433.00
IUUC-Loc-052163	Lepisosteus oculatus	64.81	1.00e-124	438.00
IUUC-Lma-053113	Leptosphaeria maculans	60.49	3.00e-116	410.00
IUUC-Laf-054422	Loxodonta africana	65.43	4.00e-125	439.00
IUUC-Mcc-055348	Macaca mulatta	65.43	4.00e-125	440.00
IUUC-Meu-056543	Macropus eugenii	65.43	2.00e-125	441.00
IUUC-Mga-059387	Meleagris gallopavo	65.43	4.00e-125	439.00
IUUC-Mmr-061141	Microcebus murinus	59.46	1.00e-90	325.00
IUUC-Mdo-062932	Monodelphis domestica	65.43	4.00e-125	439.00
IUUC-Mmu-064132	Mus musculus	65.43	4.00e-125	439.00
IUUC-Mpu-066721	Mustela putorius furo	64.51	5.00e-121	426.00
IUUC-Mlu-068221	Myotis lucifugus	64.81	1.00e-114	405.00
IUUC-Nle-069865	Nomascus leucogenys	65.43	3.00e-125	441.00
IUUC-Opr-071100	Ochotona princeps	54.32	2.00e-93	335.00
IUUC-Ont-072287	Oreochromis niloticus	64.81	9.00e-126	442.00
IUUC-Oan-072788	Ornithorhynchus anatinus	65.43	4.00e-125	439.00
IUUC-Ocu-073844	Oryctolagus cuniculus	63.27	6.00e-119	419.00
IUUC-Obr-076099	Oryza brachyantha	67.25	9.00e-132	462.00
IUUC-Ola-086400	Oryzias latipes	64.51	3.00e-125	440.00
IUUC-Oga-088811	Otolemur garnettii	65.43	4.00e-125	439.00
IUUC-Oar-089962	Ovis aries	65.43	4.00e-125	439.00
IUUC-Ptr-091340	Pan troglodytes	65.43	4.00e-125	439.00
IUUC-Pan-091946	Papio anubis	65.43	3.00e-125	440.00
IUUC-Pma-094535	Petromyzon marinus	64.51	6.00e-124	436.00
IUUC-Pfo-097311	Poecilia formosa	64.20	2.00e-124	438.00
IUUC-Pab-097863	Pongo abelii	65.43	4.00e-125	440.00
IUUC-Pca-100594	Procavia capensis	65.12	2.00e-124	437.00
IUUC-Pva-102746	Pteropus vampyrus	52.16	2.00e-91	328.00
IUUC-Pte-104026	Pyrenophora teres	60.49	3.00e-116	410.00
IUUC-Pyt-104584	Pyrenophora triticirepentis	60.49	2.00e-116	410.00
IUUC-Rno-104964	Rattus norvegicus	65.43	4.00e-125	439.00
IUUC-Sha-107409	Sarcophilus harrisii	65.43	4.00e-125	439.00
IUUC-Sar-113173	Sorex araneus	65.43	4.00e-125	439.00
IUUC-Ssc-116218	Sus scrofa	62.96	2.00e-121	427.00
IUUC-Tru-118202	Takifugu rubripes	64.20	5.00e-124	436.00
IUUC-Tni-120260	Tetraodon nigroviridis	63.89	9.00e-123	432.00
IUUC-Tbe-128021	Tupaia belangeri	50.71	9.00e-52	195.00
IUUC-Ttr-128637	Tursiops truncatus	56.48	1.00e-101	362.00
IUUC-Uma-129634	Ustilago maydis	62.04	3.00e-119	420.00
IUUC-Vpa-130410	Vicugna pacos	53.64	4.00e-74	270.00
IUUC-Xtr-132105	Xenopus tropicalis	64.81	4.00e-125	440.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence