iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-100033

Ensembl Protein ID

POPTR_0012s02250.1

UniProt Accession

B9I5C4; B9I5C4_POPTR

Genbank Protein ID

EEE96643.1

Protein Name

E3 ubiquitin-protein ligase

Genbank Nucleotide ID

CM000348

Gene Name

POPTRDRAFT_823211; POPTR_0012s02250g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0012s02250	POPTR_0012s02250.1	POPTR_0012s02250.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	80.42	1.00e-154	542.00	IUUC-Ath-007192

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Populus trichocarpa

Functional Description
(View)

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.

Protein Sequence
(Fasta)

MDFDNIECVS SSDGLDEDEI HHHNLQHHHL HQFASPKPHN VNNNSNGIAN VVGGPTVIAP 60
ATSVHELLEC PVCTNSMYPP IHQCHNGHTL CSTCKTRVQN RCPTCRQELG DIRCLALEKV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGAGACAACA AGCCAAGAAA AGAATGTTTT TTTTTTTTTT TGGGGAGAGA GAGAGATTCA 60
GAGGAACCAA ACAAGCCTCT ATTTCTCTCT CTCTCACTCA AAACGTTCTC AAGAAAACAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0436--Ligase
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR018121--7-in-absentia-prot_TRAF-dom
IPR004162--SINA-like
IPR008974--TRAF-like
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR013010--Znf_SIAH

PROSITE

PS50089--ZF_RING_2
PS51081--ZF_SIAH

Pfam

PF03145--Sina

Gene Ontology

GO:0005634--C:nucleus
GO:0016874--F:ligase activity
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0007275--P:multicellular organism development
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0012s02250g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000061	Aegilops tauschii	77.39	2.00e-125	441.00
IUUC-Atr-003118	Amborella trichopoda	82.01	7.00e-137	479.00
IUUC-Aly-006522	Arabidopsis lyrata	80.72	2.00e-159	554.00
IUUC-Ath-007192	Arabidopsis thaliana	80.42	4.00e-159	553.00
IUUC-Bdi-014729	Brachypodium distachyon	89.86	1.00e-154	538.00
IUUC-Bol-015983	Brassica oleracea	84.67	2.00e-155	540.00
IUUC-Bra-016910	Brassica rapa	77.71	1.00e-156	544.00
IUUC-Gma-042926	Glycine max	79.15	5.00e-136	476.00
IUUC-Hvu-047574	Hordeum vulgare	77.78	8.00e-126	442.00
IUUC-Lpe-050879	Leersia perrieri	79.53	1.00e-125	442.00
IUUC-Mtr-058699	Medicago truncatula	86.14	1.00e-166	578.00
IUUC-Mac-065670	Musa acuminata	81.33	3.00e-161	560.00
IUUC-Oba-075289	Oryza barthii	91.41	2.00e-142	498.00
IUUC-Obr-076037	Oryza brachyantha	78.34	2.00e-132	464.00
IUUC-Ogl-077148	Oryza glaberrima	83.20	3.00e-132	463.00
IUUC-Ogu-078042	Oryza glumaepatula	83.20	2.00e-132	464.00
IUUC-Oin-079325	Oryza indica	83.20	4.00e-132	463.00
IUUC-Olo-080244	Oryza longistaminata	83.20	1.00e-132	466.00
IUUC-Ome-081318	Oryza meridionalis	80.31	2.00e-125	441.00
IUUC-Oni-082163	Oryza nivara	83.20	3.00e-132	463.00
IUUC-Opu-084065	Oryza punctata	79.92	4.00e-125	440.00
IUUC-Oru-084833	Oryza rufipogon	83.20	4.00e-132	463.00
IUUC-Osa-085316	Oryza sativa	83.20	4.00e-132	463.00
IUUC-Ppa-095212	Physcomitrella patens	86.92	1.00e-139	488.00
IUUC-Ppe-101960	Prunus persica	85.55	6.00e-173	598.00
IUUC-Pva-102368	Pteropus vampyrus	32.99	7.00e-10	57.40
IUUC-Smo-109412	Selaginella moellendorffii	86.54	6.00e-140	489.00
IUUC-Sit-110245	Setaria italica	83.59	6.00e-132	463.00
IUUC-Sly-111259	Solanum lycopersicum	80.18	6.00e-155	539.00
IUUC-Stu-112571	Solanum tuberosum	81.08	3.00e-157	547.00
IUUC-Sbi-114035	Sorghum bicolor	82.76	3.00e-133	467.00
IUUC-Tsy-119548	Tarsius syrichta	30.56	2.00e-08	52.00
IUUC-Tca-121517	Theobroma cacao	88.76	2.00e-172	597.00
IUUC-Tae-123647	Triticum aestivum	77.39	2.00e-125	441.00
IUUC-Tur-126259	Triticum urartu	80.84	3.00e-131	460.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence