iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sbi-114747

Ensembl Protein ID

Sb10g029900.1

UniProt Accession

C5Z1T0; C5Z1T0_SORBI

Genbank Protein ID

EER90377.1

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000769

Gene Name

SORBI_010G262800

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb10g029900	Sb10g029900.1	Sb10g029900.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.70e-10	41.0	386	421

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 4    dsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           +sv++laf ++ + l+s+++Dg ++ WDl t ++++
   Q: 386  GSVRSLAFaDGgNQLLSSGGDGHVYHWDLGTRKCIH 421
           79******97779****************9998876 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MSLISQNAVQ KRRLKKSEAD DGNDENIGSP TSIDAEVGKE AKLKNHNKER KKKRTKVQES 60
QQNKEEEEMR QLESSLFGSL YAPLEFGTEA GAAVVAPDRD APLFFTDRSA GGGVDHFPIY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCCCTCCAC CGCTCCACTG TCGCACCCAC ACGGGTCCTG CCGTCTTCAT CCATCCCCTC 60
CGGTCCTCTG AAGGTGAGCC CGAATCCCCC GCCATAGTTC ACAAGCTTTG AATTCGGTAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

sbi:SORBI_10g029900

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000184	Aegilops tauschii	78.46	0.00e+00	874.00
IUUC-Aml-002252	Ailuropoda melanoleuca	37.50	2.00e-75	275.00
IUUC-Atr-002575	Amborella trichopoda	55.85	3.00e-178	617.00
IUUC-Aly-006512	Arabidopsis lyrata	62.27	5.00e-171	593.00
IUUC-Ath-007244	Arabidopsis thaliana	61.57	3.00e-170	590.00
IUUC-Ago-007895	Ashbya gossypii	31.86	1.00e-46	180.00
IUUC-Acl-008343	Aspergillus clavatus	27.93	9.00e-47	180.00
IUUC-Afl-008445	Aspergillus flavus	29.68	2.00e-50	192.00
IUUC-Aor-009986	Aspergillus oryzae	29.89	8.00e-50	190.00
IUUC-Bgr-012201	Blumeria graminis	28.54	2.00e-53	202.00
IUUC-Bta-013058	Bos taurus	38.77	5.00e-78	284.00
IUUC-Bci-013619	Botrytis cinerea	28.60	2.00e-46	179.00
IUUC-Bdi-014771	Brachypodium distachyon	77.24	0.00e+00	823.00
IUUC-Bol-015230	Brassica oleracea	59.80	6.00e-158	549.00
IUUC-Bra-017041	Brassica rapa	58.62	2.00e-152	531.00
IUUC-Cel-018293	Caenorhabditis elegans	27.75	4.00e-43	167.00
IUUC-Cja-019503	Callithrix jacchus	38.30	7.00e-77	280.00
IUUC-Cfa-020743	Canis familiaris	37.59	2.00e-75	275.00
IUUC-Cpo-021488	Cavia porcellus	39.27	3.00e-72	264.00
IUUC-Cre-022926	Chlamydomonas reinhardtii	39.49	7.00e-88	317.00
IUUC-Csa-023110	Chlorocebus sabaeus	38.30	8.00e-77	280.00
IUUC-Cme-027351	Cyanidioschyzon merolae	30.18	7.00e-50	191.00
IUUC-Dre-027524	Danio rerio	30.71	7.00e-60	224.00
IUUC-Dno-029243	Dasypus novemcinctus	37.35	2.00e-74	272.00
IUUC-Dor-030110	Dipodomys ordii	42.26	1.00e-74	273.00
IUUC-Dse-031217	Dothistroma septosporum	30.73	5.00e-51	194.00
IUUC-Dme-031999	Drosophila melanogaster	29.51	3.00e-46	178.00
IUUC-Eca-034350	Equus caballus	37.83	5.00e-76	277.00
IUUC-Eeu-034991	Erinaceus europaeus	40.65	3.00e-70	258.00
IUUC-Gmo-039183	Gadus morhua	39.75	8.00e-71	260.00
IUUC-Gga-040922	Gallus gallus	38.08	2.00e-79	288.00
IUUC-Gac-041475	Gasterosteus aculeatus	37.33	1.00e-66	246.00
IUUC-Gma-043598	Glycine max	57.64	0.00e+00	641.00
IUUC-Ggo-044517	Gorilla gorilla	38.06	5.00e-76	277.00
IUUC-Hsa-045741	Homo sapiens	38.06	8.00e-76	276.00
IUUC-Hvu-047463	Hordeum vulgare	83.33	7.00e-81	291.00
IUUC-Itr-048128	Ictidomys tridecemlineatus	36.56	3.00e-76	278.00
IUUC-Kpa-049335	Komagataella pastoris	33.26	6.00e-59	220.00
IUUC-Lch-049816	Latimeria chalumnae	37.53	1.00e-73	270.00
IUUC-Lpe-051140	Leersia perrieri	76.88	0.00e+00	814.00
IUUC-Loc-051942	Lepisosteus oculatus	40.56	2.00e-66	246.00
IUUC-Laf-054245	Loxodonta africana	38.77	4.00e-77	281.00
IUUC-Meu-056300	Macropus eugenii	37.39	4.00e-62	230.00
IUUC-Mor-057184	Magnaporthe oryzae	27.90	2.00e-41	162.00
IUUC-Mtr-058019	Medicago truncatula	59.33	0.00e+00	642.00
IUUC-Mga-060179	Meleagris gallopavo	37.66	2.00e-76	278.00
IUUC-Mvi-060435	Microbotryum violaceum	35.37	1.00e-73	270.00
IUUC-Mdo-062187	Monodelphis domestica	41.44	9.00e-73	266.00
IUUC-Mmu-063386	Mus musculus	35.45	8.00e-75	273.00
IUUC-Mpu-066084	Mustela putorius furo	36.97	4.00e-74	271.00
IUUC-Mlu-068130	Myotis lucifugus	37.12	1.00e-74	273.00
IUUC-Nle-069743	Nomascus leucogenys	35.14	8.00e-62	230.00
IUUC-Opr-071111	Ochotona princeps	40.50	5.00e-74	271.00
IUUC-Ont-071979	Oreochromis niloticus	36.26	5.00e-72	264.00
IUUC-Ocu-073754	Oryctolagus cuniculus	37.95	4.00e-79	288.00
IUUC-Oba-075007	Oryza barthii	79.29	0.00e+00	850.00
IUUC-Obr-076447	Oryza brachyantha	78.49	0.00e+00	868.00
IUUC-Ogl-077733	Oryza glaberrima	79.29	0.00e+00	851.00
IUUC-Ogu-078828	Oryza glumaepatula	79.29	0.00e+00	853.00
IUUC-Oin-080152	Oryza indica	79.29	0.00e+00	852.00
IUUC-Olo-080983	Oryza longistaminata	78.79	0.00e+00	845.00
IUUC-Oni-082443	Oryza nivara	79.11	0.00e+00	850.00
IUUC-Opu-083771	Oryza punctata	79.64	0.00e+00	833.00
IUUC-Oru-084272	Oryza rufipogon	79.29	0.00e+00	852.00
IUUC-Osa-085885	Oryza sativa	79.11	0.00e+00	863.00
IUUC-Oga-088834	Otolemur garnettii	39.34	3.00e-77	281.00
IUUC-Oar-089712	Ovis aries	38.30	2.00e-77	282.00
IUUC-Pan-092561	Papio anubis	37.83	1.00e-75	276.00
IUUC-Ppa-095397	Physcomitrella patens	50.68	1.00e-123	435.00
IUUC-Pfo-097068	Poecilia formosa	34.43	1.00e-69	256.00
IUUC-Pop-099471	Populus trichocarpa	57.05	4.00e-176	610.00
IUUC-Ppe-101684	Prunus persica	58.87	0.00e+00	640.00
IUUC-Pva-102851	Pteropus vampyrus	36.41	1.00e-69	256.00
IUUC-Pgr-103370	Puccinia graminis	35.40	2.00e-64	239.00
IUUC-Ptt-103838	Puccinia triticina	33.26	3.00e-56	211.00
IUUC-Rno-104910	Rattus norvegicus	38.12	5.00e-75	274.00
IUUC-Sce-106258	Saccharomyces cerevisiae	28.72	1.00e-47	183.00
IUUC-Sja-107746	Schizosaccharomyces japonicus	31.98	1.00e-70	259.00
IUUC-Spo-108268	Schizosaccharomyces pombe	34.49	2.00e-72	266.00
IUUC-Smo-108815	Selaginella moellendorffii	54.08	2.00e-131	461.00
IUUC-Sit-109706	Setaria italica	92.46	0.00e+00	1020.00
IUUC-Sly-111533	Solanum lycopersicum	60.64	3.00e-177	613.00
IUUC-Stu-112853	Solanum tuberosum	60.95	2.00e-180	624.00
IUUC-Ssc-115916	Sus scrofa	37.35	1.00e-76	279.00
IUUC-Tru-118724	Takifugu rubripes	37.05	4.00e-68	251.00
IUUC-Tsy-118928	Tarsius syrichta	43.93	6.00e-51	194.00
IUUC-Tca-121229	Theobroma cacao	60.83	0.00e+00	664.00
IUUC-Tae-125218	Triticum aestivum	78.46	0.00e+00	872.00
IUUC-Tur-126082	Triticum urartu	67.22	3.00e-135	473.00
IUUC-Ttr-128904	Tursiops truncatus	41.94	2.00e-63	235.00
IUUC-Vpa-130817	Vicugna pacos	38.06	1.00e-78	286.00
IUUC-Vvi-131395	Vitis vinifera	60.28	0.00e+00	679.00
IUUC-Xtr-132971	Xenopus tropicalis	37.68	7.00e-83	300.00
IUUC-Xma-133391	Xiphophorus maculatus	37.54	2.00e-67	249.00
IUUC-Yli-134613	Yarrowia lipolytica	30.49	1.00e-56	213.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence