iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Spo-108268

Ensembl Protein ID

SPBC29A3.06.1:pep

UniProt Accession

P78750; UTP18_SCHPO

Genbank Protein ID

CAA18383.2; BAA13761.1

Protein Name

Probable U3 small nucleolar RNA-associated protein 18

Genbank Nucleotide ID

CU329671; D89098

Gene Name

utp18; SPBC29A3.06

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
SPBC29A3.06	SPBC29A3.06.1	SPBC29A3.06.1:pep

Annotation

mRNA Expression
GEO
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.60e-13	46.3	254	282

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 3    tdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           ++ ++c++  +  +ll++++ D t++++ l
   Q: 254  SG-IRCMSIhPYfPLLLTCGFDRTLRIYQL 282
           44.9**99998889*************986 PP

Organism

Schizosaccharomyces pombe

Functional Description
(View)

Involved in nucleolar processing of pre-18S ribosomal RNA.

Protein Sequence
(Fasta)

MASSKENNLK NSVYRDAFLD ISSKSRKTAE KPSSKKMEKD TEELELENAV FGNINNFSSF 60
LDKENETFDV MMNEAPELSE DNDAQEDELE KLEDAELFMF DTGSADGAKD SVPLDIIAGD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGTTGGGTGA ATTTTTCAAA AACCAACTCT ACATAATTAT CTAAACATTT TTATTCGGAT 60
GGCTTCAAGT AAGGAAAATA ACTTGAAAAA CTCCGTATAC CGAGATGCTT TTCTCGATAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006364--P:rRNA processing

KEGG

spo:SPBC29A3.06

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000184	Aegilops tauschii	32.90	5.00e-70	256.00
IUUC-Aml-002252	Ailuropoda melanoleuca	26.37	1.00e-44	172.00
IUUC-Atr-002575	Amborella trichopoda	33.40	1.00e-70	258.00
IUUC-Aly-006512	Arabidopsis lyrata	31.98	1.00e-64	239.00
IUUC-Ath-007244	Arabidopsis thaliana	32.22	3.00e-64	237.00
IUUC-Ago-007895	Ashbya gossypii	43.54	1.00e-86	311.00
IUUC-Acl-008343	Aspergillus clavatus	36.84	4.00e-80	290.00
IUUC-Afl-008445	Aspergillus flavus	34.45	2.00e-86	311.00
IUUC-Aor-009986	Aspergillus oryzae	34.45	2.00e-85	307.00
IUUC-Ame-011338	Astyanax mexicanus	30.79	1.00e-53	201.00
IUUC-Bgr-012201	Blumeria graminis	37.06	2.00e-86	311.00
IUUC-Bta-013058	Bos taurus	25.96	4.00e-47	180.00
IUUC-Bci-013619	Botrytis cinerea	36.43	2.00e-86	310.00
IUUC-Bdi-014771	Brachypodium distachyon	32.61	6.00e-71	259.00
IUUC-Bol-015230	Brassica oleracea	33.66	6.00e-64	236.00
IUUC-Bra-017041	Brassica rapa	33.25	2.00e-62	231.00
IUUC-Cel-018293	Caenorhabditis elegans	23.50	5.00e-34	136.00
IUUC-Cja-019503	Callithrix jacchus	26.74	2.00e-46	178.00
IUUC-Cfa-020743	Canis familiaris	28.57	3.00e-45	174.00
IUUC-Cpo-021488	Cavia porcellus	28.62	3.00e-45	174.00
IUUC-Cre-022926	Chlamydomonas reinhardtii	29.61	2.00e-51	194.00
IUUC-Csa-023110	Chlorocebus sabaeus	27.53	3.00e-47	180.00
IUUC-Cin-025208	Ciona intestinalis	29.72	6.00e-39	152.00
IUUC-Cme-027351	Cyanidioschyzon merolae	28.06	2.00e-43	168.00
IUUC-Dre-027524	Danio rerio	27.97	2.00e-40	158.00
IUUC-Dno-029243	Dasypus novemcinctus	26.23	2.00e-46	177.00
IUUC-Dor-030110	Dipodomys ordii	29.56	3.00e-47	181.00
IUUC-Dse-031217	Dothistroma septosporum	36.06	7.00e-82	296.00
IUUC-Dme-031999	Drosophila melanogaster	26.87	2.00e-41	161.00
IUUC-Eca-034350	Equus caballus	26.97	1.00e-46	179.00
IUUC-Eeu-034991	Erinaceus europaeus	28.62	2.00e-44	171.00
IUUC-Fal-036614	Ficedula albicollis	28.18	7.00e-43	166.00
IUUC-Gmo-039183	Gadus morhua	32.50	1.00e-49	188.00
IUUC-Gga-040922	Gallus gallus	28.02	2.00e-52	197.00
IUUC-Gac-041475	Gasterosteus aculeatus	29.73	2.00e-44	171.00
IUUC-Gma-042732	Glycine max	35.60	2.00e-79	287.00
IUUC-Ggo-044517	Gorilla gorilla	26.98	1.00e-46	179.00
IUUC-Hsa-045741	Homo sapiens	26.74	5.00e-46	177.00
IUUC-Hvu-047463	Hordeum vulgare	34.88	4.00e-24	102.00
IUUC-Itr-048128	Ictidomys tridecemlineatus	27.69	1.00e-50	192.00
IUUC-Kpa-049335	Komagataella pastoris	38.62	7.00e-93	332.00
IUUC-Lch-049816	Latimeria chalumnae	27.77	4.00e-44	170.00
IUUC-Lpe-051140	Leersia perrieri	32.80	6.00e-66	243.00
IUUC-Loc-051942	Lepisosteus oculatus	30.39	1.00e-44	172.00
IUUC-Laf-054245	Loxodonta africana	27.13	3.00e-45	174.00
IUUC-Meu-056300	Macropus eugenii	25.98	2.00e-34	137.00
IUUC-Mor-057184	Magnaporthe oryzae	31.50	9.00e-66	242.00
IUUC-Mtr-058019	Medicago truncatula	33.89	8.00e-74	269.00
IUUC-Mga-060179	Meleagris gallopavo	28.50	2.00e-48	184.00
IUUC-Mvi-060435	Microbotryum violaceum	32.89	2.00e-69	254.00
IUUC-Mdo-062187	Monodelphis domestica	29.15	5.00e-43	167.00
IUUC-Mmu-063386	Mus musculus	28.30	8.00e-51	192.00
IUUC-Mpu-066084	Mustela putorius furo	27.03	6.00e-45	173.00
IUUC-Mlu-068130	Myotis lucifugus	26.74	1.00e-45	175.00
IUUC-Nle-069743	Nomascus leucogenys	26.61	6.00e-42	163.00
IUUC-Opr-071111	Ochotona princeps	28.05	8.00e-46	176.00
IUUC-Ont-071979	Oreochromis niloticus	29.40	1.00e-50	192.00
IUUC-Ocu-073754	Oryctolagus cuniculus	26.58	2.00e-48	184.00
IUUC-Oba-075007	Oryza barthii	32.26	6.00e-68	249.00
IUUC-Obr-076447	Oryza brachyantha	33.19	1.00e-70	258.00
IUUC-Ogl-077733	Oryza glaberrima	32.26	3.00e-68	250.00
IUUC-Ogu-078828	Oryza glumaepatula	32.26	5.00e-68	249.00
IUUC-Oin-080152	Oryza indica	32.26	3.00e-68	250.00
IUUC-Olo-080983	Oryza longistaminata	32.40	4.00e-68	250.00
IUUC-Oni-082443	Oryza nivara	32.26	7.00e-68	249.00
IUUC-Opu-083771	Oryza punctata	32.40	1.00e-68	252.00
IUUC-Oru-084272	Oryza rufipogon	32.26	7.00e-68	249.00
IUUC-Osa-085885	Oryza sativa	32.48	3.00e-68	250.00
IUUC-Olu-087644	Ostreococcus lucimarinus	23.29	1.00e-18	85.50
IUUC-Oga-088834	Otolemur garnettii	26.68	2.00e-46	178.00
IUUC-Oar-089712	Ovis aries	25.96	4.00e-47	180.00
IUUC-Pan-092561	Papio anubis	27.38	1.00e-46	179.00
IUUC-Ppa-095397	Physcomitrella patens	35.31	2.00e-70	258.00
IUUC-Pfo-097068	Poecilia formosa	30.47	5.00e-52	196.00
IUUC-Pop-099471	Populus trichocarpa	32.66	6.00e-65	239.00
IUUC-Ppe-101446	Prunus persica	34.34	1.00e-70	258.00
IUUC-Pva-102851	Pteropus vampyrus	25.35	1.00e-41	162.00
IUUC-Pgr-103370	Puccinia graminis	29.31	2.00e-56	211.00
IUUC-Ptt-103838	Puccinia triticina	26.69	2.00e-46	178.00
IUUC-Rno-104910	Rattus norvegicus	28.54	1.00e-49	189.00
IUUC-Sce-106258	Saccharomyces cerevisiae	40.19	1.00e-94	338.00
IUUC-Sja-107746	Schizosaccharomyces japonicus	60.29	0.00e+00	687.00
IUUC-Smo-108815	Selaginella moellendorffii	33.13	2.00e-67	248.00
IUUC-Sit-109706	Setaria italica	32.49	4.00e-74	270.00
IUUC-Sly-111533	Solanum lycopersicum	33.62	4.00e-72	263.00
IUUC-Stu-112853	Solanum tuberosum	34.17	2.00e-71	261.00
IUUC-Sbi-114747	Sorghum bicolor	35.05	4.00e-75	273.00
IUUC-Ssc-115916	Sus scrofa	26.97	2.00e-47	181.00
IUUC-Tgu-117291	Taeniopygia guttata	28.88	6.00e-44	169.00
IUUC-Tru-118724	Takifugu rubripes	33.74	2.00e-51	194.00
IUUC-Tsy-118928	Tarsius syrichta	31.40	1.00e-29	122.00
IUUC-Tca-121229	Theobroma cacao	35.52	2.00e-78	284.00
IUUC-Tae-125218	Triticum aestivum	32.90	7.00e-70	256.00
IUUC-Tur-126082	Triticum urartu	29.70	1.00e-36	145.00
IUUC-Ttr-128904	Tursiops truncatus	29.03	1.00e-37	148.00
IUUC-Vpa-130817	Vicugna pacos	25.62	1.00e-46	179.00
IUUC-Vvi-131395	Vitis vinifera	34.77	3.00e-76	277.00
IUUC-Xtr-132971	Xenopus tropicalis	28.40	3.00e-51	194.00
IUUC-Xma-133391	Xiphophorus maculatus	29.73	1.00e-52	198.00
IUUC-Yli-134613	Yarrowia lipolytica	38.99	2.00e-91	327.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence