iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0003s05820	POPTR_0003s05820.2	POPTR_0003s05820.2
POPTR_0003s05820	POPTR_0003s05820.1	POPTR_0003s05820.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.40e-27	93.4	146	183
UBD/Beta-Prp	2.70e-42	146.1	28	217

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 4    dsvtclaf..sd.tllvsGsdDgtikvWDlrtgvllks 38
           +s++ +a+  sd t+l+s++d g +++WD+r+g+ +++
   Q: 146  GSIRTVAWlhSDqTILSSCTDIGGVRLWDVRSGKIVQT 183
           689******9997888888877***********99985 PP

UBD/Beta-Prp

   S: 19   spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdkl 109
           +pd+ +l+++s+d++  + + +tg+ + +++gh+++v++++++ ++   ++gs D  +k+wd  tg+ +h+++ h++ v++++fs++++ l
   Q: 28   TPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTSALRAASGSADFSAKLWDALTGDELHSFE-HKHIVRACTFSEDTHLL 117
           89999*****************************************9**************************.***************** PP
   S: 110  vsGshdrtirvwdletgqclee.tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgs 199
           ++G+  +++r++dl+        +++   ++ +++ +h+d+ +l s+++ + vrlWd+++gk+++tl+   +++v+s +++++g+++ + +
   Q: 118  LTGGVEKILRIFDLNRPDAPPReVDNSPGSIRTVAWLHSDQTILSSCTDIGGVRLWDVRSGKIVQTLET--KSPVTSAEVSRDGRYITT-A 205
           **************987766662555555555555666666888888888*****************75..************977655.6 PP
   S: 200  ldgtvklwdlqt 211
           + +tvk+wd  +
   Q: 206  DGSTVKFWDANH 217
           789******875 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MDKKKVAVPL VCHGHSRPVV DLFYSPVTPD GFFLISASKD SSPMLRNGET GDWIGTFEGH 60
KGAVWSCCLD TSALRAASGS ADFSAKLWDA LTGDELHSFE HKHIVRACTF SEDTHLLLTG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCTTCTGCGA TTAGCCCTCA CAGAGCGGTT ACTCTCAATC TTTTTTATTT ATTTTTAAAT 60
TTTCATTTCA TTGCTTTTTC CTCTTTTTTG ATGTGTTCGT AAAATTAATT TTTCATAGAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

KEGG

pop:POPTR_0003s05820g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000668	Aegilops tauschii	81.34	1.00e-167	581.00
IUUC-Atr-002571	Amborella trichopoda	86.35	1.00e-177	614.00
IUUC-Ath-007376	Arabidopsis thaliana	82.85	3.00e-171	593.00
IUUC-Bdi-014996	Brachypodium distachyon	81.52	3.00e-170	590.00
IUUC-Cre-022806	Chlamydomonas reinhardtii	55.67	4.00e-89	320.00
IUUC-Dme-031857	Drosophila melanogaster	49.83	5.00e-79	287.00
IUUC-Gac-041876	Gasterosteus aculeatus	50.00	3.00e-75	274.00
IUUC-Gma-044014	Glycine max	85.10	0.00e+00	632.00
IUUC-Ggo-044583	Gorilla gorilla	48.45	2.00e-72	265.00
IUUC-Lpe-051246	Leersia perrieri	81.21	1.00e-171	595.00
IUUC-Mtr-058421	Medicago truncatula	84.52	3.00e-175	607.00
IUUC-Mla-059073	Melampsora laricipopulina	45.31	4.00e-67	247.00
IUUC-Mac-065617	Musa acuminata	86.21	0.00e+00	628.00
IUUC-Ont-072663	Oreochromis niloticus	49.50	1.00e-71	262.00
IUUC-Oba-075160	Oryza barthii	83.58	5.00e-172	596.00
IUUC-Obr-076414	Oryza brachyantha	81.34	1.00e-171	594.00
IUUC-Ogl-077076	Oryza glaberrima	83.28	6.00e-172	595.00
IUUC-Ogu-078591	Oryza glumaepatula	83.58	5.00e-172	596.00
IUUC-Oin-079631	Oryza indica	82.46	2.00e-172	597.00
IUUC-Olo-080389	Oryza longistaminata	80.40	3.00e-122	430.00
IUUC-Ome-081693	Oryza meridionalis	81.52	7.00e-170	588.00
IUUC-Oni-082741	Oryza nivara	82.46	2.00e-172	597.00
IUUC-Opu-084163	Oryza punctata	81.74	3.00e-173	600.00
IUUC-Oru-084809	Oryza rufipogon	82.46	2.00e-172	597.00
IUUC-Osa-086010	Oryza sativa	83.14	1.00e-172	597.00
IUUC-Ppa-095206	Physcomitrella patens	68.00	2.00e-139	488.00
IUUC-Pca-100761	Procavia capensis	45.52	4.00e-67	247.00
IUUC-Ppe-102035	Prunus persica	85.30	2.00e-175	607.00
IUUC-Pva-102794	Pteropus vampyrus	45.86	1.00e-67	249.00
IUUC-Pgr-103581	Puccinia graminis	44.98	2.00e-66	245.00
IUUC-Ptt-103862	Puccinia triticina	45.54	3.00e-65	241.00
IUUC-Smo-108960	Selaginella moellendorffii	71.85	7.00e-142	496.00
IUUC-Sre-115008	Sporisorium reilianum	42.72	3.00e-62	231.00
IUUC-Tru-117558	Takifugu rubripes	51.72	4.00e-79	287.00
IUUC-Tsy-119522	Tarsius syrichta	47.93	9.00e-70	256.00
IUUC-Tni-120330	Tetraodon nigroviridis	52.58	3.00e-77	281.00
IUUC-Tca-121759	Theobroma cacao	86.09	0.00e+00	629.00
IUUC-Tae-123053	Triticum aestivum	81.34	1.00e-168	585.00
IUUC-Tur-126808	Triticum urartu	79.80	3.00e-144	503.00
IUUC-Tme-127137	Tuber melanosporum	44.56	9.00e-63	233.00
IUUC-Vvi-131432	Vitis vinifera	86.92	0.00e+00	629.00
IUUC-Xtr-132648	Xenopus tropicalis	48.28	4.00e-70	257.00
IUUC-Yli-134670	Yarrowia lipolytica	35.83	9.00e-49	186.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence