iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
PhosphositePlus
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.40e-19	68.5	233	275

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf....sd.tllvsGsdDgtikvW.Dlrtgvllk 37
           gH ++v+++++    s  ++l+s+s D+t kvW  +++g++l+
   Q: 233  GHRGPVNSIQWcpvfSKsHMLLSASMDKTFKVWnAVDSGHCLQ 275
           8*************95569**************8888888877 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MASLVAYDDS DPESEADPAR SGDAAGQMSD VSGISRPEVE FASSTGVTKE GAQHTGNSPY 60
EDPGKQRLPL ARLWRSDPGS CPSQRLQWPS KEPDSTFPTS EPPGPSLWMN RAPVGHVPLA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGACCAAGCT CCGGCTTGAT GACAAGCACC TTTAATCCAC CGAGGCTTCT TGCTGGCCCA 60
GACATCATAT ACTTTATAGT TTTCCCTTTT TAAAAGGTAT GTTTTCTATT TTTAAGTGTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

KEGG

rno:314443

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001588	Ailuropoda melanoleuca	75.14	0.00e+00	803.00
IUUC-Atr-003155	Amborella trichopoda	36.51	6.00e-64	238.00
IUUC-Apl-003544	Anas platyrhynchos	68.25	6.00e-88	316.00
IUUC-Aly-006510	Arabidopsis lyrata	35.46	1.00e-65	243.00
IUUC-Ath-007329	Arabidopsis thaliana	36.62	2.00e-67	249.00
IUUC-Ame-010607	Astyanax mexicanus	58.11	4.00e-73	267.00
IUUC-Bta-013542	Bos taurus	71.93	0.00e+00	760.00
IUUC-Bdi-014736	Brachypodium distachyon	34.76	9.00e-69	254.00
IUUC-Bol-016112	Brassica oleracea	37.06	1.00e-67	249.00
IUUC-Bra-016685	Brassica rapa	37.38	2.00e-67	249.00
IUUC-Cja-018883	Callithrix jacchus	76.39	0.00e+00	800.00
IUUC-Cfa-021278	Canis familiaris	74.77	0.00e+00	798.00
IUUC-Cpo-022449	Cavia porcellus	81.60	3.00e-170	590.00
IUUC-Csa-023916	Chlorocebus sabaeus	77.43	0.00e+00	800.00
IUUC-Csv-026371	Ciona savignyi	32.12	7.00e-42	164.00
IUUC-Dno-029053	Dasypus novemcinctus	59.25	9.00e-102	363.00
IUUC-Dor-030299	Dipodomys ordii	67.78	5.00e-136	477.00
IUUC-Ete-032974	Echinops telfairi	43.68	8.00e-73	268.00
IUUC-Eca-033484	Equus caballus	73.10	0.00e+00	761.00
IUUC-Fca-035673	Felis catus	74.77	0.00e+00	781.00
IUUC-Fal-036795	Ficedula albicollis	67.89	9.00e-141	492.00
IUUC-Gmo-039062	Gadus morhua	56.78	3.00e-92	331.00
IUUC-Gga-040773	Gallus gallus	68.75	3.00e-116	410.00
IUUC-Gac-042364	Gasterosteus aculeatus	57.93	5.00e-94	337.00
IUUC-Gma-043100	Glycine max	38.41	6.00e-64	238.00
IUUC-Ggo-045220	Gorilla gorilla	76.72	0.00e+00	789.00
IUUC-Hsa-046511	Homo sapiens	77.61	0.00e+00	798.00
IUUC-Hvu-047431	Hordeum vulgare	37.10	1.00e-63	236.00
IUUC-Lch-049590	Latimeria chalumnae	66.42	3.00e-110	390.00
IUUC-Lpe-050810	Leersia perrieri	37.96	8.00e-51	194.00
IUUC-Loc-052196	Lepisosteus oculatus	55.50	1.00e-123	436.00
IUUC-Laf-053481	Loxodonta africana	70.64	4.00e-138	484.00
IUUC-Mcc-055622	Macaca mulatta	76.87	0.00e+00	795.00
IUUC-Meu-055978	Macropus eugenii	34.64	6.00e-37	147.00
IUUC-Mtr-058041	Medicago truncatula	38.17	2.00e-63	236.00
IUUC-Mga-060149	Meleagris gallopavo	68.90	4.00e-89	320.00
IUUC-Mmr-061552	Microcebus murinus	74.30	0.00e+00	793.00
IUUC-Mdo-061969	Monodelphis domestica	50.71	6.00e-154	537.00
IUUC-Mmu-063343	Mus musculus	94.02	0.00e+00	917.00
IUUC-Mac-065079	Musa acuminata	36.74	3.00e-58	219.00
IUUC-Mpu-065949	Mustela putorius furo	74.06	0.00e+00	688.00
IUUC-Mlu-067523	Myotis lucifugus	72.32	0.00e+00	650.00
IUUC-Nle-069645	Nomascus leucogenys	72.97	3.00e-161	561.00
IUUC-Ont-072361	Oreochromis niloticus	50.78	9.00e-113	400.00
IUUC-Ocu-074916	Oryctolagus cuniculus	68.94	4.00e-137	481.00
IUUC-Oba-075367	Oryza barthii	37.71	2.00e-58	219.00
IUUC-Obr-076738	Oryza brachyantha	38.14	3.00e-63	236.00
IUUC-Ogu-078590	Oryza glumaepatula	37.71	2.00e-58	219.00
IUUC-Oin-079678	Oryza indica	37.82	1.00e-63	236.00
IUUC-Olo-080453	Oryza longistaminata	37.55	4.00e-61	228.00
IUUC-Ome-081794	Oryza meridionalis	40.33	3.00e-53	202.00
IUUC-Oni-082432	Oryza nivara	37.94	1.00e-63	237.00
IUUC-Opu-083897	Oryza punctata	38.02	9.00e-64	237.00
IUUC-Oru-085068	Oryza rufipogon	35.95	5.00e-56	211.00
IUUC-Osa-085805	Oryza sativa	37.82	1.00e-63	237.00
IUUC-Ola-087567	Oryzias latipes	56.25	6.00e-93	333.00
IUUC-Oga-088168	Otolemur garnettii	76.64	0.00e+00	803.00
IUUC-Oar-090158	Ovis aries	66.04	2.00e-179	622.00
IUUC-Ptr-090913	Pan troglodytes	67.35	0.00e+00	685.00
IUUC-Pan-092157	Papio anubis	77.80	0.00e+00	805.00
IUUC-Psi-093817	Pelodiscus sinensis	69.12	4.00e-117	413.00
IUUC-Pma-094263	Petromyzon marinus	55.87	9.00e-57	212.00
IUUC-Ppa-095302	Physcomitrella patens	37.66	2.00e-65	243.00
IUUC-Pfo-097526	Poecilia formosa	50.90	5.00e-113	401.00
IUUC-Pab-098152	Pongo abelii	76.71	0.00e+00	739.00
IUUC-Pop-099987	Populus trichocarpa	39.87	4.00e-71	261.00
IUUC-Pca-100527	Procavia capensis	60.06	1.00e-101	363.00
IUUC-Ppe-101575	Prunus persica	35.37	2.00e-66	246.00
IUUC-Pva-102942	Pteropus vampyrus	72.17	0.00e+00	761.00
IUUC-Sha-106763	Sarcophilus harrisii	50.26	2.00e-158	552.00
IUUC-Sit-110488	Setaria italica	38.46	4.00e-64	238.00
IUUC-Sly-110893	Solanum lycopersicum	36.89	3.00e-62	232.00
IUUC-Stu-112566	Solanum tuberosum	36.25	8.00e-61	227.00
IUUC-Sar-113617	Sorex araneus	58.21	9.00e-121	427.00
IUUC-Sbi-114566	Sorghum bicolor	37.06	2.00e-65	243.00
IUUC-Tgu-117015	Taeniopygia guttata	68.20	1.00e-140	492.00
IUUC-Tsy-119467	Tarsius syrichta	65.85	2.00e-118	418.00
IUUC-Tca-121587	Theobroma cacao	36.74	1.00e-64	240.00
IUUC-Tae-123717	Triticum aestivum	37.42	6.00e-64	238.00
IUUC-Tbe-127502	Tupaia belangeri	66.04	0.00e+00	628.00
IUUC-Ttr-129033	Tursiops truncatus	75.14	0.00e+00	786.00
IUUC-Vvi-131505	Vitis vinifera	36.42	5.00e-66	244.00
IUUC-Xtr-132851	Xenopus tropicalis	61.54	6.00e-79	286.00
IUUC-Xma-133463	Xiphophorus maculatus	51.74	3.00e-111	395.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence