iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
RAID2
Protein-protein Interaction
IID
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.90e-06	28.4	369	406

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtcla.fsd.tllvsGsdDgtikvWDlrtgvllk 37
           H + vt+++ f +  +l ++   g+ik+WDlr  ++++
   Q: 369  HDSAVTSVQvFKEeQYLMASDMAGKIKLWDLRATKCVR 406
           9999****967445899999999*********999987 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MDKNIWTSRR RRGRSHHRSP ALRQCDSSER YTSGASQSSQ DSGHHDVECP STSSSKAGES 60
SVPDLPGFYF DPEKNRYFRL LPGHNNCNPL TKEGIQLKEM ESRRLQLLQQ EDKQKKKIAR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAGAACCGG TCGCTTTAGT CCTATGGGCT GCGACAACAC AGAACATGGG TGTCTTTCCG 60
GATCTTCGCA CGCCTCTGGG TACTCCAGGC CAGCCGTGTT GTGTCTGAGA GGACCGTCTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

SMART

SM00320--WD40

Gene Ontology

GO:0071013--C:catalytic step 2 spliceosome
GO:0071011--C:precatalytic spliceosome
GO:0005682--C:U5 snRNP
GO:0008380--P:RNA splicing

KEGG

rno:362762

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001176	Aegilops tauschii	39.36	3.00e-12	65.50
IUUC-Aml-001929	Ailuropoda melanoleuca	82.26	0.00e+00	790.00
IUUC-Atr-002556	Amborella trichopoda	30.59	2.00e-14	73.60
IUUC-Apl-003177	Anas platyrhynchos	68.11	6.00e-171	593.00
IUUC-Aca-004610	Anolis carolinensis	64.19	0.00e+00	631.00
IUUC-Aly-005883	Arabidopsis lyrata	31.98	4.00e-13	69.30
IUUC-Ath-006668	Arabidopsis thaliana	32.52	7.00e-15	75.50
IUUC-Ate-010340	Aspergillus terreus	22.10	3.00e-10	60.10
IUUC-Ame-010690	Astyanax mexicanus	61.14	1.00e-154	539.00
IUUC-Bta-012668	Bos taurus	79.83	0.00e+00	716.00
IUUC-Bdi-014848	Brachypodium distachyon	34.44	1.00e-13	71.20
IUUC-Bol-016035	Brassica oleracea	34.16	9.00e-16	78.20
IUUC-Bra-016687	Brassica rapa	33.54	1.00e-14	74.70
IUUC-Cja-019560	Callithrix jacchus	78.26	1.00e-73	268.00
IUUC-Cfa-020441	Canis familiaris	82.46	0.00e+00	776.00
IUUC-Cpo-021299	Cavia porcellus	77.85	0.00e+00	774.00
IUUC-Csa-023185	Chlorocebus sabaeus	84.29	0.00e+00	787.00
IUUC-Cho-024353	Choloepus hoffmanni	78.41	0.00e+00	773.00
IUUC-Dno-029890	Dasypus novemcinctus	79.78	0.00e+00	728.00
IUUC-Dor-030618	Dipodomys ordii	82.19	3.00e-89	322.00
IUUC-Ete-032557	Echinops telfairi	68.80	3.00e-132	464.00
IUUC-Eca-033466	Equus caballus	80.36	0.00e+00	805.00
IUUC-Eeu-034995	Erinaceus europaeus	69.23	1.00e-141	495.00
IUUC-Fca-036199	Felis catus	82.81	0.00e+00	770.00
IUUC-Fal-036717	Ficedula albicollis	68.51	1.00e-169	589.00
IUUC-Gmo-039201	Gadus morhua	58.41	3.00e-150	525.00
IUUC-Gga-040398	Gallus gallus	69.05	3.00e-159	555.00
IUUC-Gac-042391	Gasterosteus aculeatus	54.18	2.00e-159	555.00
IUUC-Gma-042906	Glycine max	27.04	3.00e-10	59.70
IUUC-Ggo-045348	Gorilla gorilla	83.73	0.00e+00	795.00
IUUC-Hsa-046746	Homo sapiens	83.95	0.00e+00	798.00
IUUC-Hvu-047825	Hordeum vulgare	33.76	2.00e-15	77.00
IUUC-Itr-048472	Ictidomys tridecemlineatus	81.97	0.00e+00	780.00
IUUC-Lch-050272	Latimeria chalumnae	56.25	3.00e-145	508.00
IUUC-Lpe-051618	Leersia perrieri	28.66	2.00e-12	67.00
IUUC-Loc-051772	Lepisosteus oculatus	60.55	8.00e-164	570.00
IUUC-Laf-054577	Loxodonta africana	69.89	1.00e-176	612.00
IUUC-Mcc-055284	Macaca mulatta	71.08	2.00e-180	624.00
IUUC-Meu-056721	Macropus eugenii	63.47	4.00e-90	324.00
IUUC-Mtr-058472	Medicago truncatula	29.11	2.00e-12	67.00
IUUC-Mga-059238	Meleagris gallopavo	69.25	3.00e-162	564.00
IUUC-Mmr-061642	Microcebus murinus	85.68	0.00e+00	689.00
IUUC-Mdo-062030	Monodelphis domestica	68.57	5.00e-180	624.00
IUUC-Mmu-063420	Mus musculus	93.64	0.00e+00	964.00
IUUC-Mac-065231	Musa acuminata	32.85	3.00e-16	80.10
IUUC-Mpu-065692	Mustela putorius furo	82.66	0.00e+00	790.00
IUUC-Mlu-067428	Myotis lucifugus	81.56	0.00e+00	776.00
IUUC-Nle-070145	Nomascus leucogenys	82.35	0.00e+00	803.00
IUUC-Opr-071081	Ochotona princeps	77.31	0.00e+00	699.00
IUUC-Ont-071302	Oreochromis niloticus	60.23	1.00e-153	536.00
IUUC-Oan-073494	Ornithorhynchus anatinus	57.49	3.00e-124	438.00
IUUC-Ocu-073925	Oryctolagus cuniculus	83.18	0.00e+00	750.00
IUUC-Oba-075797	Oryza barthii	28.30	2.00e-12	67.80
IUUC-Obr-076014	Oryza brachyantha	29.49	2.00e-13	70.90
IUUC-Ogl-077201	Oryza glaberrima	28.30	1.00e-12	67.40
IUUC-Ogu-078056	Oryza glumaepatula	28.30	2.00e-12	67.40
IUUC-Oin-080062	Oryza indica	28.30	2.00e-12	67.40
IUUC-Olo-080869	Oryza longistaminata	28.30	1.00e-12	68.90
IUUC-Ome-081820	Oryza meridionalis	28.30	6.00e-13	68.90
IUUC-Oni-082497	Oryza nivara	28.30	2.00e-12	67.40
IUUC-Opu-083780	Oryza punctata	28.67	3.00e-11	64.30
IUUC-Oru-085091	Oryza rufipogon	28.30	1.00e-12	67.80
IUUC-Osa-085725	Oryza sativa	28.30	1.00e-12	67.80
IUUC-Ola-087033	Oryzias latipes	59.68	2.00e-142	499.00
IUUC-Oga-088861	Otolemur garnettii	78.59	0.00e+00	753.00
IUUC-Oar-090048	Ovis aries	80.17	0.00e+00	768.00
IUUC-Ptr-091658	Pan troglodytes	83.51	0.00e+00	793.00
IUUC-Pan-092873	Papio anubis	80.67	0.00e+00	792.00
IUUC-Psi-093421	Pelodiscus sinensis	68.47	9.00e-175	606.00
IUUC-Pma-094216	Petromyzon marinus	43.18	8.00e-94	337.00
IUUC-Ppa-095186	Physcomitrella patens	47.76	7.00e-10	58.90
IUUC-Pfo-096178	Poecilia formosa	58.24	2.00e-143	502.00
IUUC-Pab-098037	Pongo abelii	70.38	1.00e-163	569.00
IUUC-Pop-099334	Populus trichocarpa	31.68	5.00e-16	77.40
IUUC-Pca-100845	Procavia capensis	69.68	0.00e+00	665.00
IUUC-Pva-103203	Pteropus vampyrus	79.60	0.00e+00	776.00
IUUC-Sha-107389	Sarcophilus harrisii	72.18	0.00e+00	642.00
IUUC-Spo-108190	Schizosaccharomyces pombe	25.33	3.00e-07	49.30
IUUC-Sit-110421	Setaria italica	30.56	7.00e-14	71.20
IUUC-Sly-110888	Solanum lycopersicum	24.50	4.00e-08	53.10
IUUC-Sar-113185	Sorex araneus	63.81	2.00e-157	548.00
IUUC-Sbi-114182	Sorghum bicolor	40.79	4.00e-13	67.80
IUUC-Ssc-116005	Sus scrofa	82.49	0.00e+00	796.00
IUUC-Tgu-117023	Taeniopygia guttata	65.26	5.00e-163	567.00
IUUC-Tru-118221	Takifugu rubripes	59.01	9.00e-152	530.00
IUUC-Tsy-118784	Tarsius syrichta	70.63	3.00e-169	587.00
IUUC-Tni-120072	Tetraodon nigroviridis	58.84	1.00e-152	533.00
IUUC-Tca-121267	Theobroma cacao	25.86	1.00e-17	84.70
IUUC-Tae-124900	Triticum aestivum	33.12	1.00e-15	76.60
IUUC-Tur-126655	Triticum urartu	33.12	2.00e-15	76.60
IUUC-Tbe-127243	Tupaia belangeri	71.52	0.00e+00	649.00
IUUC-Ttr-129237	Tursiops truncatus	84.62	0.00e+00	676.00
IUUC-Vvi-131184	Vitis vinifera	27.72	1.00e-09	57.80
IUUC-Xtr-132006	Xenopus tropicalis	50.00	1.00e-122	433.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence