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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Rno-104933
UUCD1 version UUC-RaN-00530
Ensembl Protein ID ENSRNOP00000016733.5
UniProt Accession F1LR39; F1LR39_RAT
Genbank Protein ID EDL89362.1
Protein Name RCG29171, isoform CRA_a; WD repeat-containing protein 18
Genbank Nucleotide ID AABR07055844
Gene Name Wdr18; rCG_29171
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000012379.7 ENSRNOT00000016733.7 ENSRNOP00000016733.5
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
microRNATRANSFACRAID2
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 8.80e-18 64.1 267 305
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH + vtcl+  +d  +l+sGs+D ++++WD+++  +++
   Q: 267  GHRNQVTCLSVsTDgSILLSGSHDESVRLWDVKSKQCVR 305
           8**********988899****************999987 PP
   
Organism Rattus norvegicus
Protein Sequence
(Fasta)
MAAPMEVVVC TDSAAPLWSC MVWELHSGAN LLTYRGGQAG PRGLALLNGE YLLAAQQGKN 60
YICAWELQRK DQLQQKIMCP GPVTCLTTAP NGLYVLAGIA ESIYLWEVST GNLLVILSRH 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-104933|E3,WD_repeat|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GGCAGGGCAA GATGGCGGCG CCCATGGAAG TGGTGGTGTG TACAGACTCC GCGGCACCGC 60
TATGGAGCTG TATGGTGTGG GAGCTTCATT CGGGCGCCAA CCTGCTCACC TATCGAGGCG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-104933|E3,WD_repeat|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat
Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR026987--Wdr18_C_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00400--WD40
PF14077--WD40_alt
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001040 Aegilops tauschii 33.74 8.00e-30 124.00
IUUC-Aml-001819 Ailuropoda melanoleuca 82.18 0.00e+00 669.00
IUUC-Atr-002688 Amborella trichopoda 35.44 5.00e-40 158.00
IUUC-Apl-004023 Anas platyrhynchos 53.89 1.00e-92 332.00
IUUC-Aca-004879 Anolis carolinensis 69.13 1.00e-50 192.00
IUUC-Aly-006061 Arabidopsis lyrata 31.72 2.00e-36 146.00
IUUC-Ath-007111 Arabidopsis thaliana 31.73 4.00e-34 139.00
IUUC-Ame-010912 Astyanax mexicanus 62.18 5.00e-157 547.00
IUUC-Bgr-012242 Blumeria graminis 24.92 1.00e-13 70.90
IUUC-Bta-013402 Bos taurus 84.49 0.00e+00 710.00
IUUC-Bci-013791 Botrytis cinerea 25.53 5.00e-11 62.40
IUUC-Bdi-014455 Brachypodium distachyon 32.10 2.00e-30 127.00
IUUC-Bol-016342 Brassica oleracea 31.46 4.00e-32 132.00
IUUC-Bra-016967 Brassica rapa 31.79 7.00e-33 134.00
IUUC-Cja-019758 Callithrix jacchus 81.73 0.00e+00 649.00
IUUC-Cfa-020495 Canis familiaris 80.99 1.00e-164 572.00
IUUC-Cpo-021438 Cavia porcellus 85.47 2.00e-167 581.00
IUUC-Csa-023416 Chlorocebus sabaeus 83.10 0.00e+00 698.00
IUUC-Csv-025918 Ciona savignyi 33.49 1.00e-62 234.00
IUUC-Cne-026843 Cryptococcus neoformans 27.63 1.00e-18 87.80
IUUC-Dre-027560 Danio rerio 59.86 3.00e-152 531.00
IUUC-Dno-029315 Dasypus novemcinctus 81.63 0.00e+00 715.00
IUUC-Dor-030935 Dipodomys ordii 82.48 0.00e+00 713.00
IUUC-Dse-031492 Dothistroma septosporum 24.83 4.00e-19 89.70
IUUC-Dme-032059 Drosophila melanogaster 33.63 5.00e-57 215.00
IUUC-Fca-036068 Felis catus 78.00 0.00e+00 635.00
IUUC-Fal-037467 Ficedula albicollis 68.46 4.00e-148 517.00
IUUC-Fox-037903 Fusarium oxysporum 27.08 3.00e-16 79.70
IUUC-Gmo-039323 Gadus morhua 51.29 2.00e-112 399.00
IUUC-Ggr-040050 Gaeumannomyces graminis 26.90 5.00e-11 62.40
IUUC-Gga-040563 Gallus gallus 68.38 2.00e-140 492.00
IUUC-Gac-042641 Gasterosteus aculeatus 56.25 1.00e-140 493.00
IUUC-Gma-044265 Glycine max 33.13 2.00e-39 156.00
IUUC-Ggo-045137 Gorilla gorilla 83.33 0.00e+00 672.00
IUUC-Hsa-046335 Homo sapiens 83.33 0.00e+00 672.00
IUUC-Hvu-047685 Hordeum vulgare 33.04 6.00e-33 134.00
IUUC-Itr-048032 Ictidomys tridecemlineatus 83.33 0.00e+00 730.00
IUUC-Kpa-049129 Komagataella pastoris 29.00 3.00e-28 119.00
IUUC-Lch-049532 Latimeria chalumnae 62.41 4.00e-163 567.00
IUUC-Lpe-051321 Leersia perrieri 30.28 2.00e-28 119.00
IUUC-Loc-052471 Lepisosteus oculatus 60.05 6.00e-146 510.00
IUUC-Lma-053091 Leptosphaeria maculans 25.24 7.00e-22 99.00
IUUC-Laf-054331 Loxodonta africana 79.63 0.00e+00 650.00
IUUC-Mcc-055803 Macaca mulatta 83.10 0.00e+00 698.00
IUUC-Meu-056090 Macropus eugenii 73.15 0.00e+00 646.00
IUUC-Mor-057160 Magnaporthe oryzae 27.24 5.00e-15 75.90
IUUC-Mtr-058800 Medicago truncatula 33.54 1.00e-39 157.00
IUUC-Mla-058943 Melampsora laricipopulina 38.31 5.00e-26 112.00
IUUC-Mga-059282 Meleagris gallopavo 61.52 9.00e-131 459.00
IUUC-Mvi-060315 Microbotryum violaceum 36.84 3.00e-25 110.00
IUUC-Mmr-061127 Microcebus murinus 86.11 0.00e+00 724.00
IUUC-Mdo-062350 Monodelphis domestica 72.92 0.00e+00 642.00
IUUC-Mmu-063706 Mus musculus 95.82 0.00e+00 817.00
IUUC-Mac-065554 Musa acuminata 29.74 9.00e-27 114.00
IUUC-Mpu-066711 Mustela putorius furo 82.64 0.00e+00 729.00
IUUC-Mlu-068121 Myotis lucifugus 80.11 4.00e-160 556.00
IUUC-Ncr-068914 Neurospora crassa 28.18 6.00e-16 78.60
IUUC-Nle-069518 Nomascus leucogenys 81.82 8.00e-180 622.00
IUUC-Ont-071435 Oreochromis niloticus 58.93 1.00e-144 506.00
IUUC-Oan-073532 Ornithorhynchus anatinus 66.02 6.00e-38 148.00
IUUC-Oba-075873 Oryza barthii 31.47 9.00e-39 154.00
IUUC-Obr-076097 Oryza brachyantha 26.94 7.00e-26 112.00
IUUC-Ogl-077840 Oryza glaberrima 31.47 6.00e-39 154.00
IUUC-Ogu-077988 Oryza glumaepatula 31.47 9.00e-39 154.00
IUUC-Oin-079237 Oryza indica 33.04 5.00e-26 111.00
IUUC-Olo-080415 Oryza longistaminata 30.28 8.00e-31 129.00
IUUC-Ome-081952 Oryza meridionalis 31.18 1.00e-37 150.00
IUUC-Oni-082300 Oryza nivara 31.47 9.00e-39 154.00
IUUC-Opu-083436 Oryza punctata 34.25 1.00e-24 107.00
IUUC-Oru-085164 Oryza rufipogon 31.47 6.00e-39 154.00
IUUC-Osa-086129 Oryza sativa 31.75 4.00e-39 155.00
IUUC-Ola-086571 Oryzias latipes 55.32 1.00e-133 469.00
IUUC-Oga-088561 Otolemur garnettii 85.19 0.00e+00 714.00
IUUC-Oar-090131 Ovis aries 73.44 2.00e-166 578.00
IUUC-Ptr-091301 Pan troglodytes 65.30 2.00e-144 505.00
IUUC-Pan-092810 Papio anubis 82.87 0.00e+00 696.00
IUUC-Psi-093091 Pelodiscus sinensis 59.51 1.00e-115 409.00
IUUC-Pno-095047 Phaeosphaeria nodorum 23.86 1.00e-17 84.30
IUUC-Ppa-095317 Physcomitrella patens 39.59 8.00e-34 138.00
IUUC-Pfo-096996 Poecilia formosa 58.00 3.00e-137 481.00
IUUC-Pab-097747 Pongo abelii 83.65 0.00e+00 674.00
IUUC-Pop-099609 Populus trichocarpa 34.43 4.00e-43 169.00
IUUC-Pca-100972 Procavia capensis 77.73 6.00e-172 597.00
IUUC-Ppe-101904 Prunus persica 34.48 4.00e-42 165.00
IUUC-Pva-102700 Pteropus vampyrus 88.61 2.00e-110 392.00
IUUC-Pgr-103616 Puccinia graminis 37.66 2.00e-23 103.00
IUUC-Ptt-103954 Puccinia triticina 37.01 5.00e-22 99.40
IUUC-Pte-104120 Pyrenophora teres 24.16 2.00e-22 100.00
IUUC-Pyt-104558 Pyrenophora triticirepentis 24.46 7.00e-23 102.00
IUUC-Sha-107636 Sarcophilus harrisii 73.15 0.00e+00 646.00
IUUC-Sja-107783 Schizosaccharomyces japonicus 32.38 2.00e-33 136.00
IUUC-Spo-108192 Schizosaccharomyces pombe 27.22 1.00e-24 107.00
IUUC-Ssl-108384 Sclerotinia sclerotiorum 27.14 4.00e-17 82.40
IUUC-Smo-109498 Selaginella moellendorffii 35.22 4.00e-37 149.00
IUUC-Sit-110770 Setaria italica 33.74 2.00e-37 150.00
IUUC-Sly-111453 Solanum lycopersicum 32.96 2.00e-42 166.00
IUUC-Stu-112384 Solanum tuberosum 32.94 9.00e-42 164.00
IUUC-Sbi-113952 Sorghum bicolor 33.44 9.00e-36 144.00
IUUC-Sre-115223 Sporisorium reilianum 26.35 2.00e-24 107.00
IUUC-Ssc-115627 Sus scrofa 84.26 0.00e+00 711.00
IUUC-Tgu-117404 Taeniopygia guttata 68.17 2.00e-140 491.00
IUUC-Tru-117629 Takifugu rubripes 57.03 2.00e-125 441.00
IUUC-Tni-119839 Tetraodon nigroviridis 54.61 8.00e-121 427.00
IUUC-Tca-121766 Theobroma cacao 33.33 4.00e-42 165.00
IUUC-Tae-125634 Triticum aestivum 33.92 3.00e-34 139.00
IUUC-Tur-126673 Triticum urartu 31.70 2.00e-25 109.00
IUUC-Tme-127070 Tuber melanosporum 24.35 1.00e-17 84.30
IUUC-Tbe-127452 Tupaia belangeri 75.97 2.00e-94 339.00
IUUC-Ttr-128735 Tursiops truncatus 81.25 0.00e+00 665.00
IUUC-Uma-129521 Ustilago maydis 26.20 2.00e-23 103.00
IUUC-Vvi-130872 Vitis vinifera 31.32 2.00e-40 160.00
IUUC-Xtr-131838 Xenopus tropicalis 62.24 4.00e-132 464.00
IUUC-Xma-134106 Xiphophorus maculatus 64.31 2.00e-114 405.00
IUUC-Yli-134551 Yarrowia lipolytica 28.40 8.00e-21 94.70
IUUC-Zma-134703 Zea mays 31.89 6.00e-35 141.00
Created Date 25-Jun-2017

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