iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Rno-104973

Ensembl Protein ID

ENSRNOP00000017469.5

UniProt Accession

B0BND5; B0BND5_RAT

Genbank Protein ID

AAI58779.1; EDL77289.1

Protein Name

RNA, U3 small nucleolar interacting protein 2 (Predicted), isoform CRA_a; Ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (Yeast); Ribosomal RNA-processing 9, small subunit (SSU) processome component, homolog (yeast)

Genbank Nucleotide ID

AABR07071437; CH473954

Gene Name

Rrp9; Rnu3ip2_predicted; rCG_25833

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000012927.6	ENSRNOT00000017469.6	ENSRNOP00000017469.5

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
miRNAMap
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.50e-30	102.1	325	359
UBD/Beta-Prp	2.30e-41	142.3	148	409

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDlrtgv 34
           gH++s+ c+++ ++ ++vsG+dDg++ +W l++ +
   Q: 325  GHQGSIDCIHLiNEEHMVSGADDGSVALWGLSKKR 359
           8*********9999***************987665 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkl...........lrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkc 86
           h+  itc+ ++pd+  ++++ +d ti+ w+v+tg +             + sgh++ + ++ +s+dgk+l++g + ++i +w+ ++++ 
   Q: 148  HQLSITCLVITPDDLAIFSAAKDCTIIKWSVETGRKlhviprakkgtQGQPSGHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCQH 236
           56688999999***********************999******99988899************************************** PP
   S: 87   vhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtl 175
           ++t++gh d v  l+f + ++ l s+shdr ++vw+  +++ +e tl gh+++v  +   + ++++ +G+ D+tvr+W+++ ++ l   
   Q: 237  LYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNAAENSYVE-TLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQLVFY 324
           ******************99***********************9.****************9******************998888755 PP
   S: 176  tgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnght...........dnvksvrfspnderlvsgssDgsiriWdlr 252
            g h++s+ ++ +  + +++vsg++dg+v lw l++++ +  +++              +++sv+++ n++++++gs+   +r+W + 
   Q: 325  -G-HQGSIDCIHLINE-EHMVSGADDGSVALWGLSKKRPLALQREAHglhgepgleqpFWISSVAALLNTDLVATGSHNACVRLWQCG 409
           .6.*********8876.7*****************9999777766555888999999999*************************875 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MNSMSTAVAT RKRAKPAPGP GAAPVDGKRR RKVDSAASRG KSKGGGKMNE EISSDSESES 60
LAPRKTEEEE EEELEETAQE KKLRLAKLYL EQLRQQEEEK AEARAFEEDQ VAGRLKEDVL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGGGGTTTAG CAGCCATGTG AGTTCTTCAG TAGAGGCTGC GGCACCTTGA TGAACAGTAT 60
GTCGACCGCC GTGGCAACTC GTAAACGGGC AAAGCCAGCT CCCGGGCCCG GGGCGGCCCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0031428--C:box C/D snoRNP complex
GO:0032040--C:small-subunit processome
GO:0030515--F:snoRNA binding
GO:0034511--F:U3 snoRNA binding
GO:0006364--P:rRNA processing

KEGG

rno:363134

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000586	Aegilops tauschii	34.03	9.00e-57	214.00
IUUC-Aml-002072	Ailuropoda melanoleuca	91.91	0.00e+00	748.00
IUUC-Atr-002824	Amborella trichopoda	37.53	2.00e-72	266.00
IUUC-Apl-003264	Anas platyrhynchos	75.07	4.00e-167	580.00
IUUC-Aca-004898	Anolis carolinensis	72.20	0.00e+00	630.00
IUUC-Aly-005535	Arabidopsis lyrata	37.70	4.00e-66	245.00
IUUC-Ath-007119	Arabidopsis thaliana	37.11	2.00e-72	266.00
IUUC-Ago-007710	Ashbya gossypii	29.14	2.00e-58	219.00
IUUC-Acl-008345	Aspergillus clavatus	32.93	2.00e-57	217.00
IUUC-Afl-008718	Aspergillus flavus	33.01	5.00e-56	212.00
IUUC-Afu-008966	Aspergillus fumigatus	29.81	7.00e-55	208.00
IUUC-Ani-009214	Aspergillus nidulans	32.35	3.00e-58	219.00
IUUC-Ang-009774	Aspergillus niger	33.58	6.00e-59	222.00
IUUC-Aor-009956	Aspergillus oryzae	33.01	5.00e-56	212.00
IUUC-Ate-010449	Aspergillus terreus	30.51	3.00e-56	213.00
IUUC-Ame-011860	Astyanax mexicanus	70.99	5.00e-169	587.00
IUUC-Bgr-012213	Blumeria graminis	30.88	9.00e-63	234.00
IUUC-Bta-012698	Bos taurus	90.11	0.00e+00	736.00
IUUC-Bci-013973	Botrytis cinerea	28.48	8.00e-60	224.00
IUUC-Bdi-014790	Brachypodium distachyon	36.62	9.00e-64	238.00
IUUC-Bol-016068	Brassica oleracea	37.83	2.00e-66	246.00
IUUC-Bra-017410	Brassica rapa	37.04	2.00e-61	230.00
IUUC-Cel-018616	Caenorhabditis elegans	37.53	3.00e-74	272.00
IUUC-Cja-019532	Callithrix jacchus	90.11	0.00e+00	741.00
IUUC-Cfa-020961	Canis familiaris	89.08	0.00e+00	741.00
IUUC-Cpo-021527	Cavia porcellus	89.35	0.00e+00	755.00
IUUC-Csa-023106	Chlorocebus sabaeus	95.00	0.00e+00	760.00
IUUC-Cin-025670	Ciona intestinalis	52.17	7.00e-124	437.00
IUUC-Csv-026172	Ciona savignyi	52.43	2.00e-117	415.00
IUUC-Cgl-026619	Colletotrichum gloeosporioides	32.70	5.00e-63	235.00
IUUC-Cne-027070	Cryptococcus neoformans	30.36	1.00e-47	184.00
IUUC-Cme-027125	Cyanidioschyzon merolae	27.15	2.00e-34	140.00
IUUC-Dre-027919	Danio rerio	67.44	4.00e-159	554.00
IUUC-Dno-029684	Dasypus novemcinctus	93.80	1.00e-168	585.00
IUUC-Dor-030363	Dipodomys ordii	85.71	1.00e-104	373.00
IUUC-Dse-031503	Dothistroma septosporum	32.00	2.00e-60	227.00
IUUC-Dme-031979	Drosophila melanogaster	44.56	2.00e-98	352.00
IUUC-Eca-033735	Equus caballus	93.52	0.00e+00	721.00
IUUC-Fca-036193	Felis catus	92.39	0.00e+00	740.00
IUUC-Fal-037058	Ficedula albicollis	70.57	4.00e-169	587.00
IUUC-Fox-038036	Fusarium oxysporum	32.05	1.00e-62	234.00
IUUC-Fso-038298	Fusarium solani	32.97	1.00e-62	234.00
IUUC-Gmo-038796	Gadus morhua	64.74	4.00e-142	498.00
IUUC-Ggr-040074	Gaeumannomyces graminis	32.74	6.00e-54	205.00
IUUC-Gga-040743	Gallus gallus	78.15	1.00e-136	479.00
IUUC-Gac-042583	Gasterosteus aculeatus	65.01	2.00e-167	582.00
IUUC-Gma-042659	Glycine max	38.79	7.00e-80	291.00
IUUC-Ggo-045543	Gorilla gorilla	92.63	0.00e+00	765.00
IUUC-Hsa-047017	Homo sapiens	95.45	0.00e+00	766.00
IUUC-Hvu-047173	Hordeum vulgare	38.18	1.00e-69	257.00
IUUC-Itr-048062	Ictidomys tridecemlineatus	87.16	0.00e+00	756.00
IUUC-Kpa-049262	Komagataella pastoris	32.20	2.00e-58	219.00
IUUC-Lch-050566	Latimeria chalumnae	67.74	2.00e-155	542.00
IUUC-Lpe-051651	Leersia perrieri	36.08	1.00e-67	250.00
IUUC-Loc-051997	Lepisosteus oculatus	71.19	1.00e-165	576.00
IUUC-Lma-053182	Leptosphaeria maculans	30.29	7.00e-61	228.00
IUUC-Laf-054105	Loxodonta africana	93.63	0.00e+00	723.00
IUUC-Mcc-055215	Macaca mulatta	94.77	0.00e+00	760.00
IUUC-Meu-055943	Macropus eugenii	80.58	0.00e+00	653.00
IUUC-Mor-057069	Magnaporthe oryzae	33.26	7.00e-64	238.00
IUUC-Mpo-057358	Magnaporthe poae	31.25	4.00e-52	199.00
IUUC-Mtr-058209	Medicago truncatula	38.85	1.00e-79	290.00
IUUC-Mla-059043	Melampsora laricipopulina	26.60	2.00e-47	184.00
IUUC-Mga-060024	Meleagris gallopavo	74.46	2.00e-154	538.00
IUUC-Mvi-060371	Microbotryum violaceum	32.22	1.00e-68	254.00
IUUC-Mmr-061403	Microcebus murinus	94.38	0.00e+00	746.00
IUUC-Mdo-063026	Monodelphis domestica	77.66	0.00e+00	668.00
IUUC-Mmu-063646	Mus musculus	97.68	0.00e+00	800.00
IUUC-Mac-064801	Musa acuminata	37.78	7.00e-78	284.00
IUUC-Mpu-065760	Mustela putorius furo	90.32	0.00e+00	757.00
IUUC-Mlu-067963	Myotis lucifugus	93.19	0.00e+00	738.00
IUUC-Nfi-068288	Neosartorya fischeri	31.45	1.00e-58	220.00
IUUC-Ncr-068679	Neurospora crassa	33.57	1.00e-56	214.00
IUUC-Nle-069766	Nomascus leucogenys	83.82	0.00e+00	676.00
IUUC-Opr-070906	Ochotona princeps	93.03	0.00e+00	757.00
IUUC-Ont-071661	Oreochromis niloticus	62.08	3.00e-167	581.00
IUUC-Oan-073465	Ornithorhynchus anatinus	65.90	1.00e-150	526.00
IUUC-Ocu-074263	Oryctolagus cuniculus	90.15	0.00e+00	744.00
IUUC-Oba-075607	Oryza barthii	37.60	1.00e-62	233.00
IUUC-Ogl-077387	Oryza glaberrima	37.04	4.00e-66	245.00
IUUC-Ogu-078323	Oryza glumaepatula	37.87	3.00e-66	246.00
IUUC-Oin-079977	Oryza indica	31.83	1.00e-44	174.00
IUUC-Olo-080857	Oryza longistaminata	38.54	2.00e-66	246.00
IUUC-Ome-081568	Oryza meridionalis	37.76	8.00e-66	244.00
IUUC-Oni-082685	Oryza nivara	37.87	2.00e-69	256.00
IUUC-Opu-084049	Oryza punctata	37.87	4.00e-66	245.00
IUUC-Oru-084348	Oryza rufipogon	37.87	2.00e-69	256.00
IUUC-Osa-086076	Oryza sativa	37.87	2.00e-69	256.00
IUUC-Ola-086991	Oryzias latipes	69.52	3.00e-163	568.00
IUUC-Olu-087891	Ostreococcus lucimarinus	35.28	2.00e-64	239.00
IUUC-Oga-088991	Otolemur garnettii	91.93	0.00e+00	751.00
IUUC-Oar-090430	Ovis aries	92.11	0.00e+00	721.00
IUUC-Ptr-091359	Pan troglodytes	95.68	0.00e+00	768.00
IUUC-Pan-092499	Papio anubis	94.55	0.00e+00	758.00
IUUC-Pma-094447	Petromyzon marinus	61.49	2.00e-129	455.00
IUUC-Pno-095008	Phaeosphaeria nodorum	30.20	8.00e-64	238.00
IUUC-Ppa-095680	Physcomitrella patens	39.56	4.00e-78	285.00
IUUC-Pfo-096430	Poecilia formosa	69.10	1.00e-164	572.00
IUUC-Pab-097649	Pongo abelii	95.45	0.00e+00	763.00
IUUC-Pop-100055	Populus trichocarpa	39.21	5.00e-77	281.00
IUUC-Pca-100317	Procavia capensis	73.84	1.00e-130	459.00
IUUC-Ppe-101999	Prunus persica	38.16	2.00e-80	292.00
IUUC-Pva-103046	Pteropus vampyrus	92.79	0.00e+00	744.00
IUUC-Pgr-103655	Puccinia graminis	29.32	5.00e-52	199.00
IUUC-Ptt-103812	Puccinia triticina	32.00	1.00e-46	181.00
IUUC-Pte-104243	Pyrenophora teres	30.33	7.00e-58	218.00
IUUC-Pyt-104512	Pyrenophora triticirepentis	30.30	4.00e-60	226.00
IUUC-Sce-106329	Saccharomyces cerevisiae	25.65	2.00e-49	190.00
IUUC-Sha-106941	Sarcophilus harrisii	83.33	0.00e+00	665.00
IUUC-Sja-107821	Schizosaccharomyces japonicus	32.81	8.00e-64	238.00
IUUC-Spo-108329	Schizosaccharomyces pombe	36.89	3.00e-74	272.00
IUUC-Ssl-108552	Sclerotinia sclerotiorum	29.53	1.00e-60	227.00
IUUC-Smo-109198	Selaginella moellendorffii	38.39	6.00e-64	238.00
IUUC-Sit-109694	Setaria italica	36.71	3.00e-73	269.00
IUUC-Sly-111294	Solanum lycopersicum	38.13	9.00e-80	290.00
IUUC-Stu-112747	Solanum tuberosum	38.64	5.00e-81	295.00
IUUC-Sar-113315	Sorex araneus	70.61	3.00e-73	269.00
IUUC-Sbi-114694	Sorghum bicolor	36.17	5.00e-72	265.00
IUUC-Sre-114937	Sporisorium reilianum	29.26	2.00e-65	243.00
IUUC-Ssc-116127	Sus scrofa	93.53	0.00e+00	732.00
IUUC-Tgu-117242	Taeniopygia guttata	69.44	4.00e-106	377.00
IUUC-Tru-118285	Takifugu rubripes	63.08	5.00e-169	587.00
IUUC-Tni-120368	Tetraodon nigroviridis	67.26	7.00e-162	563.00
IUUC-Tca-121724	Theobroma cacao	37.31	1.00e-74	273.00
IUUC-Tre-122106	Trichoderma reesei	33.05	3.00e-66	246.00
IUUC-Tvi-122526	Trichoderma virens	33.00	7.00e-67	248.00
IUUC-Tae-122939	Triticum aestivum	37.43	3.00e-68	252.00
IUUC-Tur-126548	Triticum urartu	37.43	4.00e-68	252.00
IUUC-Tme-126985	Tuber melanosporum	35.50	1.00e-64	241.00
IUUC-Tbe-127923	Tupaia belangeri	94.72	0.00e+00	729.00
IUUC-Ttr-129308	Tursiops truncatus	87.57	0.00e+00	666.00
IUUC-Uma-129472	Ustilago maydis	30.19	9.00e-59	221.00
IUUC-Vda-129910	Verticillium dahliae	32.18	3.00e-65	243.00
IUUC-Vvi-131683	Vitis vinifera	39.45	1.00e-87	317.00
IUUC-Xtr-132118	Xenopus tropicalis	67.68	2.00e-158	552.00
IUUC-Xma-133804	Xiphophorus maculatus	68.59	1.00e-162	566.00
IUUC-Yli-134639	Yarrowia lipolytica	32.47	7.00e-61	228.00
IUUC-Zma-135884	Zea mays	36.82	9.00e-73	267.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence