iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Cre-022781

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Predicted protein

Genbank Nucleotide ID

DS496118

Gene Name

CHLREDRAFT_135552

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CHLREDRAFT_135552	EDP05539	EDP05539

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.10e-35	117.8	124	163
UBD/Beta-Prp	1.80e-94	315.8	119	337

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllks 38
           gHtd v +l f   + +l++++ Dg +k+WD+ +g+ll+s
   Q: 124  GHTDTVAALGFnaAGSMLATAGMDGLCKLWDVADGRLLRS 163
           8**********88336********************9986 PP

UBD/Beta-Prp

   S: 45   lrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvv 145
            ++lsgh+++v+a+ f+  g++l+t++ D++ k+wd+ +g  +++l+g    +  ++++p gd++v+G++d +i +w+  +g +++ ++sgh g+v+  ++
   Q: 119  THELSGHTDTVAALGFNAAGSMLATAGMDGLCKLWDVADGRLLRSLEGSGGALQWMTWHPRGDVVVAGTDDFMIYMWNAANGAVMQ-VFSGHCGIVSAGCF 218
           589***********************************************************************************.************** PP
   S: 146  hpdgnllvs..GslDrtvrlWdlktgkllrtltgg..htdsvyslsfdsng.kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgs 241
            pdg+ +vs  G +D  +r+W+ ktg++  t +g   ht+ ++++ ++++g    ++g++dg v + ++ tg++  +l gh+d v  v +s +  + +s+s
   Q: 219  TPDGKSVVSvgGEDDASLRVWNPKTGECSLTIQGHpfHTGGINCVGLHKDGnGAAITGDEDGIVCISNIATGRVGGRLVGHEDSVEAVGLSAHLPLAASAS 319
           ****777764477899****************764449********9999966889********************************************* PP
   S: 242  sDgsiriWdlrsgdllkt 259
            Dg++riWd+ +    ++
   Q: 320  LDGTLRIWDCGTLSQRGS 337
           **********88766555 PP

Organism

Chlamydomonas reinhardtii

Protein Sequence
(Fasta)

MGRKSAEPAH MEEEEEHVDP ELIEGDVVDD LEGEDLEYGS EDGGDEDDGG DDGEDDDRVH 60
TVLEDDSFHC FDGHQDAVVS VAWNPAQPDV VATGGCDDAA YLWRVGQDAF EASAGSMGTH 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTTTTACACA CATACAGAAC ACGTCCTCTC CAGAACGCTC CAGTATAAAA CACTGTTCGT 60
GCACAGACGA ACTGCCAGTG CAGCAACCAA TCTTCAAACC CGCGTTCAGC GCGGCTGGAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR023302--Pept_S9A_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0030687--C:preribosome, large subunit precursor
GO:0051082--F:unfolded protein binding
GO:0042273--P:ribosomal large subunit biogenesis

KEGG

cre:CHLREDRAFT_135552

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000794	Aegilops tauschii	39.18	3.00e-72	264.00
IUUC-Aml-001781	Ailuropoda melanoleuca	33.61	3.00e-49	187.00
IUUC-Atr-003169	Amborella trichopoda	41.38	7.00e-77	278.00
IUUC-Aca-004594	Anolis carolinensis	33.42	3.00e-48	184.00
IUUC-Aly-006277	Arabidopsis lyrata	41.60	3.00e-69	253.00
IUUC-Ath-007701	Arabidopsis thaliana	42.24	2.00e-75	274.00
IUUC-Ago-007790	Ashbya gossypii	24.41	4.00e-19	87.40
IUUC-Ame-011651	Astyanax mexicanus	29.16	3.00e-39	154.00
IUUC-Bta-012833	Bos taurus	33.33	6.00e-48	182.00
IUUC-Bdi-014289	Brachypodium distachyon	40.86	3.00e-77	280.00
IUUC-Bol-015313	Brassica oleracea	42.36	1.00e-75	275.00
IUUC-Bra-017115	Brassica rapa	40.80	3.00e-66	243.00
IUUC-Cja-019433	Callithrix jacchus	33.61	1.00e-48	185.00
IUUC-Cfa-020093	Canis familiaris	33.61	2.00e-49	188.00
IUUC-Cpo-021742	Cavia porcellus	33.61	1.00e-48	185.00
IUUC-Csa-023498	Chlorocebus sabaeus	33.24	1.00e-48	185.00
IUUC-Cho-024628	Choloepus hoffmanni	33.45	2.00e-33	134.00
IUUC-Cin-025244	Ciona intestinalis	32.96	1.00e-38	152.00
IUUC-Csv-026218	Ciona savignyi	34.17	7.00e-43	166.00
IUUC-Cne-026911	Cryptococcus neoformans	27.55	2.00e-35	141.00
IUUC-Dre-028528	Danio rerio	31.11	1.00e-43	168.00
IUUC-Dno-029297	Dasypus novemcinctus	33.33	4.00e-48	183.00
IUUC-Ete-033100	Echinops telfairi	33.94	4.00e-26	110.00
IUUC-Eca-034277	Equus caballus	33.61	2.00e-48	184.00
IUUC-Eeu-035052	Erinaceus europaeus	31.37	1.00e-23	102.00
IUUC-Fca-036115	Felis catus	33.88	1.00e-49	188.00
IUUC-Fal-036864	Ficedula albicollis	33.97	7.00e-51	192.00
IUUC-Gmo-039090	Gadus morhua	32.75	5.00e-32	129.00
IUUC-Gga-040545	Gallus gallus	34.25	3.00e-50	190.00
IUUC-Gac-042027	Gasterosteus aculeatus	35.51	2.00e-54	204.00
IUUC-Gma-044168	Glycine max	41.50	2.00e-76	277.00
IUUC-Ggo-045036	Gorilla gorilla	33.61	2.00e-48	184.00
IUUC-Hsa-046749	Homo sapiens	33.61	2.00e-48	184.00
IUUC-Hvu-047217	Hordeum vulgare	39.66	6.00e-76	276.00
IUUC-Itr-048114	Ictidomys tridecemlineatus	33.61	1.00e-48	185.00
IUUC-Kpa-049147	Komagataella pastoris	26.54	2.00e-22	98.20
IUUC-Lch-049747	Latimeria chalumnae	35.62	2.00e-46	177.00
IUUC-Lpe-051433	Leersia perrieri	38.30	2.00e-70	258.00
IUUC-Loc-052406	Lepisosteus oculatus	34.44	9.00e-51	192.00
IUUC-Laf-053901	Loxodonta africana	33.61	2.00e-48	184.00
IUUC-Mcc-054990	Macaca mulatta	33.61	2.00e-48	184.00
IUUC-Meu-056844	Macropus eugenii	34.89	3.00e-49	187.00
IUUC-Mtr-057759	Medicago truncatula	41.33	2.00e-69	254.00
IUUC-Mla-058856	Melampsora laricipopulina	30.39	2.00e-43	167.00
IUUC-Mga-059749	Meleagris gallopavo	33.15	3.00e-49	187.00
IUUC-Mvi-060237	Microbotryum violaceum	30.08	3.00e-46	177.00
IUUC-Mmr-061270	Microcebus murinus	31.59	1.00e-44	172.00
IUUC-Mdo-062965	Monodelphis domestica	35.44	1.00e-49	189.00
IUUC-Mmu-064081	Mus musculus	33.33	4.00e-49	186.00
IUUC-Mac-065236	Musa acuminata	44.81	1.00e-80	291.00
IUUC-Mpu-066355	Mustela putorius furo	33.61	2.00e-49	188.00
IUUC-Mlu-067630	Myotis lucifugus	33.15	6.00e-48	182.00
IUUC-Nle-069701	Nomascus leucogenys	33.61	2.00e-48	184.00
IUUC-Opr-070337	Ochotona princeps	33.66	1.00e-42	165.00
IUUC-Ont-072614	Oreochromis niloticus	34.66	1.00e-50	192.00
IUUC-Ocu-073912	Oryctolagus cuniculus	33.33	8.00e-48	182.00
IUUC-Oba-075195	Oryza barthii	39.52	4.00e-73	266.00
IUUC-Obr-076059	Oryza brachyantha	39.48	2.00e-74	270.00
IUUC-Ogl-077318	Oryza glaberrima	39.19	7.00e-76	275.00
IUUC-Ogu-078579	Oryza glumaepatula	38.72	1.00e-74	271.00
IUUC-Oin-079340	Oryza indica	39.19	7.00e-76	275.00
IUUC-Olo-080813	Oryza longistaminata	39.64	3.00e-74	270.00
IUUC-Ome-081420	Oryza meridionalis	38.92	9.00e-72	261.00
IUUC-Oni-082650	Oryza nivara	39.52	4.00e-73	266.00
IUUC-Opu-083832	Oryza punctata	39.22	7.00e-72	262.00
IUUC-Oru-084207	Oryza rufipogon	39.52	4.00e-73	266.00
IUUC-Osa-085708	Oryza sativa	39.19	7.00e-76	275.00
IUUC-Ola-087164	Oryzias latipes	34.66	1.00e-48	185.00
IUUC-Olu-087824	Ostreococcus lucimarinus	41.64	2.00e-64	237.00
IUUC-Oga-088864	Otolemur garnettii	33.61	2.00e-48	184.00
IUUC-Oar-090115	Ovis aries	33.33	9.00e-48	182.00
IUUC-Ptr-091398	Pan troglodytes	33.61	2.00e-48	184.00
IUUC-Pan-092002	Papio anubis	33.61	2.00e-48	184.00
IUUC-Pma-094618	Petromyzon marinus	33.42	9.00e-47	179.00
IUUC-Ppa-095351	Physcomitrella patens	48.28	1.00e-95	341.00
IUUC-Pfo-097078	Poecilia formosa	35.23	1.00e-51	194.00
IUUC-Pab-098540	Pongo abelii	33.61	2.00e-48	184.00
IUUC-Pop-099761	Populus trichocarpa	45.38	7.00e-80	288.00
IUUC-Pca-101072	Procavia capensis	33.05	2.00e-45	174.00
IUUC-Ppe-101979	Prunus persica	42.20	1.00e-81	294.00
IUUC-Pva-102400	Pteropus vampyrus	29.62	3.00e-37	147.00
IUUC-Pgr-103362	Puccinia graminis	32.61	2.00e-47	181.00
IUUC-Ptt-103756	Puccinia triticina	30.83	1.00e-29	122.00
IUUC-Rno-105672	Rattus norvegicus	33.61	8.00e-49	186.00
IUUC-Sja-107693	Schizosaccharomyces japonicus	32.22	1.00e-51	195.00
IUUC-Spo-108208	Schizosaccharomyces pombe	33.06	2.00e-53	201.00
IUUC-Smo-109168	Selaginella moellendorffii	45.30	8.00e-88	315.00
IUUC-Sit-109978	Setaria italica	40.06	8.00e-78	282.00
IUUC-Sly-111316	Solanum lycopersicum	42.24	5.00e-81	292.00
IUUC-Stu-111956	Solanum tuberosum	42.24	5.00e-81	292.00
IUUC-Sbi-114189	Sorghum bicolor	40.17	1.00e-73	268.00
IUUC-Sre-115029	Sporisorium reilianum	34.57	1.00e-44	172.00
IUUC-Ssc-115726	Sus scrofa	34.78	7.00e-30	122.00
IUUC-Tgu-117514	Taeniopygia guttata	34.25	1.00e-51	195.00
IUUC-Tru-117851	Takifugu rubripes	33.80	2.00e-50	191.00
IUUC-Tsy-119140	Tarsius syrichta	30.60	3.00e-39	154.00
IUUC-Tni-120248	Tetraodon nigroviridis	35.71	6.00e-52	196.00
IUUC-Tca-121686	Theobroma cacao	40.73	1.00e-77	281.00
IUUC-Tae-125689	Triticum aestivum	39.66	9.00e-76	275.00
IUUC-Tur-126174	Triticum urartu	39.17	2.00e-72	264.00
IUUC-Tme-127079	Tuber melanosporum	27.64	3.00e-14	71.20
IUUC-Ttr-128182	Tursiops truncatus	33.33	3.00e-47	180.00
IUUC-Uma-129624	Ustilago maydis	34.29	8.00e-46	176.00
IUUC-Vpa-130605	Vicugna pacos	29.85	7.00e-31	126.00
IUUC-Vvi-131319	Vitis vinifera	43.10	8.00e-82	295.00
IUUC-Xtr-132193	Xenopus tropicalis	34.15	1.00e-53	202.00
IUUC-Xma-133880	Xiphophorus maculatus	35.23	3.00e-51	193.00
IUUC-Yli-134520	Yarrowia lipolytica	24.60	4.00e-23	100.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence