iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Gma-044220

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000843

Gene Name

LOC100788948; GLYMA_10G000800

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
GLYMA10G00300	GLYMA10G00300.1	GLYMA10G00300.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.30e-39	132.8	528	558
UBD/Beta-Prp	2.70e-62	212.3	278	499

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWD 29
           gH+++vt+++   d +++v+ s+D tik+W+
   Q: 528  GHEAKVTSVDVlGDgGYIVTVSHDRTIKLWS 558
           8*********88666***************7 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsf 102
           ++ +++   fs+d+++lat s +g  k+w++ + k+ +s++gh++  t+v +sp  + l+t+s Drt+k w+  +g+ + t++gh d++  ++f
   Q: 278  DDRPLSGCSFSRDGKWLATCSLTGASKLWSMPKIKKHSSFKGHTERATDVAYSPVHDHLATASADRTAKYWN--QGSLLKTFEGHLDRLARIAF 369
           567888999*************************************************************96..8******************* PP
   S: 103  spsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelv 196
           +psg++l ++s d+t r+wd+etg +l  +++gh+++v ++++h dg+l +s++lD+  r+Wdl+tg+ +  l+g h ++v  +sf++ng +l+
   Q: 370  HPSGKYLGTASFDKTWRLWDIETGDELL-LQEGHSRSVYGLAFHNDGSLAASCGLDSLARVWDLRTGRSILALEG-HVKPVLGISFSPNGYHLA 461
           ****************************.*********************************************9.****************** PP
   S: 197  sgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnd 234
           +g++d+t ++wdl++++  +t  +h++ +++v+f p++
   Q: 462  TGGEDNTCRIWDLRKKKSFYTIPAHSNLISQVKFEPQE 499
           **********************************9876 PP

Organism

Glycine max

Protein Sequence
(Fasta)

MEVEKENTTS AITAEPSVSA SDGQDPVSSV NASLPDPIQP VIPQVIAPSV VPPLAPIPAL 60
PPPRPLAPLP VRPPVIRPPV PQNGEVGSSD SDSDNDDSNA RINQGGGEYE ISEESRLVRE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATATGGTCCA CAAATAAAGG GTTGGGCCGG GGCTCAAAGT GGGTTGGCCC AGCATCCTAA 60
GTCCAATCGT GAATTCACAC TTGCTGAGTC ACCGACTCAC GCAGAGAGTT TCAGCACGAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR014906--PRP4-like
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08799--PRP4
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00500--SFM
SM00320--WD40

Gene Ontology

GO:0046540--C:U4/U6 x U5 tri-snRNP complex
GO:0030621--F:U4 snRNA binding
GO:0017070--F:U6 snRNA binding
GO:0000398--P:mRNA splicing, via spliceosome

KEGG

gmx:100788948

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000771	Aegilops tauschii	66.90	9.00e-162	563.00
IUUC-Aml-001737	Ailuropoda melanoleuca	44.56	4.00e-113	401.00
IUUC-Atr-002828	Amborella trichopoda	72.16	0.00e+00	641.00
IUUC-Apl-003723	Anas platyrhynchos	44.67	5.00e-113	401.00
IUUC-Aca-004972	Anolis carolinensis	44.23	5.00e-111	394.00
IUUC-Ago-007893	Ashbya gossypii	33.33	9.00e-58	217.00
IUUC-Acl-008236	Aspergillus clavatus	37.15	8.00e-77	281.00
IUUC-Afl-008522	Aspergillus flavus	38.08	5.00e-83	301.00
IUUC-Afu-008904	Aspergillus fumigatus	37.43	5.00e-83	301.00
IUUC-Ani-009198	Aspergillus nidulans	39.50	1.00e-84	307.00
IUUC-Ang-009662	Aspergillus niger	40.13	7.00e-84	304.00
IUUC-Aor-009881	Aspergillus oryzae	38.27	2.00e-82	300.00
IUUC-Ate-010333	Aspergillus terreus	37.30	8.00e-77	281.00
IUUC-Ame-011697	Astyanax mexicanus	43.16	4.00e-112	398.00
IUUC-Bgr-012254	Blumeria graminis	35.73	2.00e-80	293.00
IUUC-Bta-012615	Bos taurus	44.75	2.00e-113	402.00
IUUC-Bci-013720	Botrytis cinerea	38.40	2.00e-88	319.00
IUUC-Bdi-014302	Brachypodium distachyon	68.46	1.00e-174	606.00
IUUC-Cel-018632	Caenorhabditis elegans	35.85	2.00e-75	276.00
IUUC-Cja-019747	Callithrix jacchus	44.75	2.00e-113	402.00
IUUC-Cfa-020288	Canis familiaris	44.75	3.00e-113	402.00
IUUC-Cpo-021440	Cavia porcellus	44.42	2.00e-112	399.00
IUUC-Cre-022716	Chlamydomonas reinhardtii	51.43	3.00e-95	341.00
IUUC-Csa-023139	Chlorocebus sabaeus	47.56	8.00e-92	330.00
IUUC-Cho-024481	Choloepus hoffmanni	43.76	7.00e-110	390.00
IUUC-Cin-025106	Ciona intestinalis	39.87	1.00e-96	347.00
IUUC-Csv-026087	Ciona savignyi	40.96	3.00e-98	352.00
IUUC-Cgl-026538	Colletotrichum gloeosporioides	36.40	4.00e-84	306.00
IUUC-Cne-026793	Cryptococcus neoformans	38.99	8.00e-91	327.00
IUUC-Dre-028723	Danio rerio	43.53	1.00e-110	393.00
IUUC-Dno-029299	Dasypus novemcinctus	44.35	8.00e-113	400.00
IUUC-Dme-031783	Drosophila melanogaster	41.26	2.00e-90	326.00
IUUC-Ete-032669	Echinops telfairi	44.99	1.00e-114	407.00
IUUC-Eca-033566	Equus caballus	44.56	6.00e-113	401.00
IUUC-Eeu-034524	Erinaceus europaeus	51.07	5.00e-70	258.00
IUUC-Fca-036215	Felis catus	44.56	3.00e-113	402.00
IUUC-Fal-037018	Ficedula albicollis	44.19	9.00e-93	333.00
IUUC-Fox-037936	Fusarium oxysporum	35.21	3.00e-76	279.00
IUUC-Fso-038366	Fusarium solani	37.50	3.00e-82	299.00
IUUC-Gmo-038966	Gadus morhua	45.85	2.00e-86	311.00
IUUC-Ggr-039942	Gaeumannomyces graminis	35.74	6.00e-74	271.00
IUUC-Gga-040797	Gallus gallus	43.92	5.00e-113	401.00
IUUC-Gac-042598	Gasterosteus aculeatus	44.11	1.00e-102	366.00
IUUC-Ggo-044682	Gorilla gorilla	44.42	1.00e-112	399.00
IUUC-Hsa-045804	Homo sapiens	44.75	2.00e-113	403.00
IUUC-Hvu-047567	Hordeum vulgare	67.13	4.00e-157	547.00
IUUC-Itr-047882	Ictidomys tridecemlineatus	44.97	8.00e-114	404.00
IUUC-Lch-050074	Latimeria chalumnae	42.86	1.00e-100	360.00
IUUC-Lpe-051333	Leersia perrieri	67.59	8.00e-155	540.00
IUUC-Loc-052164	Lepisosteus oculatus	44.02	7.00e-112	397.00
IUUC-Lma-053088	Leptosphaeria maculans	36.09	4.00e-77	282.00
IUUC-Laf-053460	Loxodonta africana	44.75	2.00e-113	402.00
IUUC-Mcc-055859	Macaca mulatta	44.56	3.00e-113	402.00
IUUC-Meu-056134	Macropus eugenii	44.75	7.00e-113	400.00
IUUC-Mor-057251	Magnaporthe oryzae	36.11	5.00e-80	291.00
IUUC-Mpo-057375	Magnaporthe poae	41.80	1.00e-54	206.00
IUUC-Mla-059145	Melampsora laricipopulina	42.51	2.00e-88	319.00
IUUC-Mga-059855	Meleagris gallopavo	44.67	1.00e-112	400.00
IUUC-Mvi-060372	Microbotryum violaceum	42.93	6.00e-80	291.00
IUUC-Mmr-060826	Microcebus murinus	44.97	2.00e-113	402.00
IUUC-Mdo-062748	Monodelphis domestica	45.18	3.00e-113	402.00
IUUC-Mmu-063351	Mus musculus	44.56	7.00e-113	400.00
IUUC-Mac-064846	Musa acuminata	72.77	2.00e-167	581.00
IUUC-Mpu-066006	Mustela putorius furo	44.56	3.00e-113	402.00
IUUC-Mlu-067398	Myotis lucifugus	44.56	5.00e-113	401.00
IUUC-Nfi-068399	Neosartorya fischeri	37.62	1.00e-84	307.00
IUUC-Ncr-068711	Neurospora crassa	37.50	4.00e-86	311.00
IUUC-Nle-069982	Nomascus leucogenys	44.75	2.00e-113	402.00
IUUC-Opr-070596	Ochotona princeps	44.75	1.00e-113	403.00
IUUC-Ont-072374	Oreochromis niloticus	46.53	1.00e-105	377.00
IUUC-Oan-073166	Ornithorhynchus anatinus	46.98	9.00e-96	343.00
IUUC-Ocu-074371	Oryctolagus cuniculus	44.56	5.00e-113	401.00
IUUC-Oba-075083	Oryza barthii	67.09	3.00e-166	578.00
IUUC-Obr-076405	Oryza brachyantha	68.20	6.00e-160	556.00
IUUC-Ogl-077683	Oryza glaberrima	67.45	2.00e-166	578.00
IUUC-Ogu-078486	Oryza glumaepatula	67.17	3.00e-165	575.00
IUUC-Oin-079679	Oryza indica	67.10	6.00e-170	590.00
IUUC-Olo-080243	Oryza longistaminata	67.32	6.00e-145	506.00
IUUC-Ome-081230	Oryza meridionalis	66.95	8.00e-170	590.00
IUUC-Oni-082961	Oryza nivara	67.10	6.00e-170	590.00
IUUC-Opu-083189	Oryza punctata	66.95	1.00e-169	589.00
IUUC-Oru-084353	Oryza rufipogon	68.05	5.00e-164	570.00
IUUC-Osa-085458	Oryza sativa	66.95	8.00e-170	590.00
IUUC-Ola-086940	Oryzias latipes	46.06	4.00e-112	398.00
IUUC-Oga-088703	Otolemur garnettii	42.70	6.00e-106	377.00
IUUC-Oar-089829	Ovis aries	44.97	5.00e-114	404.00
IUUC-Ptr-090838	Pan troglodytes	44.75	2.00e-113	403.00
IUUC-Pan-092261	Papio anubis	44.66	6.00e-112	397.00
IUUC-Psi-093020	Pelodiscus sinensis	43.78	2.00e-111	396.00
IUUC-Pno-094858	Phaeosphaeria nodorum	37.76	6.00e-79	288.00
IUUC-Ppa-095531	Physcomitrella patens	65.30	1.00e-168	586.00
IUUC-Pab-097805	Pongo abelii	46.63	6.00e-93	334.00
IUUC-Pop-100051	Populus trichocarpa	80.17	0.00e+00	678.00
IUUC-Pca-100152	Procavia capensis	44.75	2.00e-113	402.00
IUUC-Ppe-101244	Prunus persica	78.56	0.00e+00	631.00
IUUC-Pva-102529	Pteropus vampyrus	42.83	1.00e-105	377.00
IUUC-Pgr-103550	Puccinia graminis	39.03	2.00e-92	332.00
IUUC-Pte-104151	Pyrenophora teres	35.39	3.00e-72	265.00
IUUC-Pyt-104571	Pyrenophora triticirepentis	35.61	4.00e-73	268.00
IUUC-Rno-105747	Rattus norvegicus	44.78	3.00e-113	402.00
IUUC-Sce-106418	Saccharomyces cerevisiae	32.29	2.00e-60	226.00
IUUC-Sha-107334	Sarcophilus harrisii	44.75	1.00e-112	400.00
IUUC-Spo-108189	Schizosaccharomyces pombe	39.25	9.00e-85	307.00
IUUC-Ssl-108550	Sclerotinia sclerotiorum	37.74	1.00e-87	317.00
IUUC-Smo-108924	Selaginella moellendorffii	61.28	3.00e-157	548.00
IUUC-Sit-110102	Setaria italica	67.38	9.00e-171	593.00
IUUC-Sly-111668	Solanum lycopersicum	80.18	0.00e+00	663.00
IUUC-Stu-111928	Solanum tuberosum	80.40	0.00e+00	667.00
IUUC-Sar-113266	Sorex araneus	38.81	1.00e-92	333.00
IUUC-Sbi-114134	Sorghum bicolor	68.51	9.00e-173	599.00
IUUC-Sre-115114	Sporisorium reilianum	41.04	4.00e-89	321.00
IUUC-Ssc-115443	Sus scrofa	44.75	4.00e-113	401.00
IUUC-Tgu-117157	Taeniopygia guttata	45.11	9.00e-114	404.00
IUUC-Tsy-119157	Tarsius syrichta	47.62	1.00e-98	353.00
IUUC-Tni-120427	Tetraodon nigroviridis	46.53	1.00e-108	387.00
IUUC-Tca-121368	Theobroma cacao	83.87	0.00e+00	743.00
IUUC-Tre-122074	Trichoderma reesei	36.78	5.00e-81	295.00
IUUC-Tvi-122349	Trichoderma virens	35.98	5.00e-80	291.00
IUUC-Tae-125651	Triticum aestivum	66.67	3.00e-166	578.00
IUUC-Tur-126532	Triticum urartu	68.35	4.00e-146	511.00
IUUC-Tme-126951	Tuber melanosporum	38.59	2.00e-79	289.00
IUUC-Tbe-128136	Tupaia belangeri	40.90	8.00e-99	354.00
IUUC-Ttr-129169	Tursiops truncatus	36.81	3.00e-50	192.00
IUUC-Uma-129399	Ustilago maydis	38.48	1.00e-86	313.00
IUUC-Vda-129842	Verticillium dahliae	37.80	2.00e-85	310.00
IUUC-Vpa-130440	Vicugna pacos	44.75	2.00e-113	402.00
IUUC-Vvi-131075	Vitis vinifera	74.14	0.00e+00	669.00
IUUC-Xma-133002	Xiphophorus maculatus	47.47	3.00e-92	331.00
IUUC-Yli-134569	Yarrowia lipolytica	35.53	3.00e-69	255.00
IUUC-Zma-135799	Zea mays	63.77	3.00e-165	575.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence