iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Ptr-090556

UUCD1 version

UUC-PaT-00823

Ensembl Protein ID

ENSPTRP00000043827.2

UniProt Accession

H2R2E5; H2R2E5_PANTR

Genbank Protein ID

JAA06783.1; JAA06784.1; JAA06785.1; JAA20399.1; JAA26342.1; JAA26344.1; JAA26345.1; JAA26346.1; JAA26347.1; JAA26348.1; JAA26349.1; JAA26350.1; JAA43219.1; JAA43220.1; JAA43224.1

Protein Name

WD repeat domain 55

Genbank Nucleotide ID

AACZ03038950; GABC01004554; GABC01004553; GABF01001746; GABD01006758; GABD01006756; GABD01006755; GABD01006754; GABD01006753; GABD01006752; GABD01006751; GABD01006750; GABE01001520; GABE01001519; GABE01001515

Gene Name

WDR55

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSPTRG00000017323.4	ENSPTRT00000050302.2	ENSPTRP00000043827.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.00e-23	80.2	126	157

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sdtllvsGsdDgtikvWDlrt 32
           H +++++l + +++ l++G d g i++WD r+
   Q: 126  HGAPINSLLLvDENVLATGDDTGGIRLWDQRK 157
           999*****77555****************765 PP

Organism

Pan troglodytes

Protein Sequence
(Fasta)

MDRTCEERPA EDGSDEEDPD SMEAPTRIRD TPEDIVLEAP ASGLAFHPAR DLLAAGDVDG 60
DVFVFSYSCQ EGETKELWSS GHHLKACRAV AFSEDGQKLI TVSKDKAIHV LDVEQGQLER 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGACCGCA CTTGTGAGGA GAGGCCCGCT GAGGATGGGA GCGACGAAGA GGACCCAGAC 60
TCCATGGAAG CCCCAACCCG GATCCGGGAC ACTCCGGAAG ACATCGTGCT GGAAGCTCCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR024977--Apc4_WD40_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR017422--WDR55

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005730--C:nucleolus
GO:0042273--P:ribosomal large subunit biogenesis
GO:0006364--P:rRNA processing

KEGG

ptr:100608780

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000562	Aegilops tauschii	36.64	2.00e-47	182.00
IUUC-Aml-001768	Ailuropoda melanoleuca	93.73	0.00e+00	743.00
IUUC-Atr-002764	Amborella trichopoda	35.53	2.00e-22	98.20
IUUC-Apl-003880	Anas platyrhynchos	64.36	3.00e-116	412.00
IUUC-Aca-005060	Anolis carolinensis	66.58	5.00e-150	525.00
IUUC-Aly-006484	Arabidopsis lyrata	35.81	4.00e-49	188.00
IUUC-Ath-006652	Arabidopsis thaliana	37.97	1.00e-57	216.00
IUUC-Bta-013497	Bos taurus	93.22	0.00e+00	709.00
IUUC-Bdi-014378	Brachypodium distachyon	38.44	7.00e-57	214.00
IUUC-Bol-016352	Brassica oleracea	38.31	2.00e-59	222.00
IUUC-Bra-017103	Brassica rapa	38.31	1.00e-59	223.00
IUUC-Cel-018192	Caenorhabditis elegans	23.86	1.00e-14	74.30
IUUC-Cja-018792	Callithrix jacchus	94.79	0.00e+00	705.00
IUUC-Cfa-020739	Canis familiaris	93.33	0.00e+00	710.00
IUUC-Cpo-022331	Cavia porcellus	92.17	0.00e+00	703.00
IUUC-Cre-022921	Chlamydomonas reinhardtii	39.89	2.00e-36	144.00
IUUC-Csa-023414	Chlorocebus sabaeus	96.87	0.00e+00	762.00
IUUC-Cho-024600	Choloepus hoffmanni	92.86	0.00e+00	640.00
IUUC-Cin-025565	Ciona intestinalis	38.36	9.00e-63	233.00
IUUC-Csv-026294	Ciona savignyi	39.59	4.00e-62	231.00
IUUC-Cne-026979	Cryptococcus neoformans	33.33	3.00e-40	159.00
IUUC-Cme-027192	Cyanidioschyzon merolae	25.53	6.00e-20	91.70
IUUC-Dre-028492	Danio rerio	63.33	8.00e-128	449.00
IUUC-Dno-030050	Dasypus novemcinctus	89.37	0.00e+00	641.00
IUUC-Dor-030386	Dipodomys ordii	82.09	8.00e-173	599.00
IUUC-Dme-032012	Drosophila melanogaster	34.58	4.00e-60	225.00
IUUC-Ete-032491	Echinops telfairi	88.80	0.00e+00	681.00
IUUC-Eca-033583	Equus caballus	95.04	0.00e+00	721.00
IUUC-Eeu-034976	Erinaceus europaeus	94.81	3.00e-176	610.00
IUUC-Fca-036417	Felis catus	90.08	0.00e+00	689.00
IUUC-Gmo-039505	Gadus morhua	65.48	2.00e-138	484.00
IUUC-Ggr-039978	Gaeumannomyces graminis	23.75	2.00e-11	63.20
IUUC-Gga-040732	Gallus gallus	69.82	3.00e-145	507.00
IUUC-Gac-041313	Gasterosteus aculeatus	63.99	2.00e-134	472.00
IUUC-Gma-044122	Glycine max	40.00	5.00e-58	218.00
IUUC-Ggo-044748	Gorilla gorilla	99.22	0.00e+00	778.00
IUUC-Hsa-046943	Homo sapiens	99.22	0.00e+00	778.00
IUUC-Hvu-047659	Hordeum vulgare	37.19	1.00e-54	206.00
IUUC-Itr-048110	Ictidomys tridecemlineatus	92.01	0.00e+00	669.00
IUUC-Lch-050331	Latimeria chalumnae	58.77	2.00e-113	402.00
IUUC-Lpe-051193	Leersia perrieri	39.44	9.00e-59	220.00
IUUC-Loc-051946	Lepisosteus oculatus	66.28	6.00e-134	471.00
IUUC-Laf-054035	Loxodonta africana	92.27	0.00e+00	688.00
IUUC-Mcc-055285	Macaca mulatta	96.76	8.00e-103	365.00
IUUC-Meu-056596	Macropus eugenii	84.07	2.00e-170	590.00
IUUC-Mor-056995	Magnaporthe oryzae	23.74	1.00e-11	63.90
IUUC-Mtr-058637	Medicago truncatula	40.07	1.00e-57	217.00
IUUC-Mga-059839	Meleagris gallopavo	70.61	1.00e-94	341.00
IUUC-Mdo-062868	Monodelphis domestica	82.50	3.00e-174	605.00
IUUC-Mmu-064305	Mus musculus	88.53	0.00e+00	677.00
IUUC-Mac-065041	Musa acuminata	38.73	9.00e-58	216.00
IUUC-Mpu-066779	Mustela putorius furo	93.21	0.00e+00	694.00
IUUC-Mlu-067223	Myotis lucifugus	92.54	0.00e+00	667.00
IUUC-Ncr-068919	Neurospora crassa	24.68	3.00e-08	52.80
IUUC-Nle-069852	Nomascus leucogenys	98.43	0.00e+00	722.00
IUUC-Ont-072452	Oreochromis niloticus	66.67	3.00e-139	488.00
IUUC-Oan-073163	Ornithorhynchus anatinus	82.07	1.00e-64	238.00
IUUC-Ocu-074628	Oryctolagus cuniculus	94.77	0.00e+00	715.00
IUUC-Oba-075868	Oryza barthii	38.73	7.00e-56	210.00
IUUC-Obr-076768	Oryza brachyantha	39.08	2.00e-57	215.00
IUUC-Ogl-077424	Oryza glaberrima	39.44	1.00e-58	219.00
IUUC-Ogu-078847	Oryza glumaepatula	39.08	3.00e-56	212.00
IUUC-Oin-079495	Oryza indica	39.44	1.00e-58	219.00
IUUC-Olo-080268	Oryza longistaminata	39.08	4.00e-56	211.00
IUUC-Ome-081709	Oryza meridionalis	38.85	8.00e-50	190.00
IUUC-Oni-082749	Oryza nivara	39.44	1.00e-58	219.00
IUUC-Opu-084023	Oryza punctata	33.10	6.00e-40	157.00
IUUC-Oru-084764	Oryza rufipogon	39.08	3.00e-56	212.00
IUUC-Osa-086009	Oryza sativa	39.44	1.00e-58	219.00
IUUC-Ola-086463	Oryzias latipes	61.26	4.00e-129	454.00
IUUC-Olu-087897	Ostreococcus lucimarinus	31.58	1.00e-42	166.00
IUUC-Oga-089114	Otolemur garnettii	92.45	0.00e+00	711.00
IUUC-Pan-092828	Papio anubis	97.39	0.00e+00	766.00
IUUC-Psi-093609	Pelodiscus sinensis	73.29	1.00e-120	427.00
IUUC-Pma-094413	Petromyzon marinus	53.54	3.00e-101	361.00
IUUC-Ppa-095422	Physcomitrella patens	38.26	9.00e-66	243.00
IUUC-Pfo-096389	Poecilia formosa	65.18	2.00e-131	461.00
IUUC-Pab-098095	Pongo abelii	98.17	0.00e+00	771.00
IUUC-Pop-099612	Populus trichocarpa	39.22	2.00e-54	206.00
IUUC-Pca-100408	Procavia capensis	91.16	0.00e+00	680.00
IUUC-Ppe-101931	Prunus persica	35.49	4.00e-55	208.00
IUUC-Pva-102549	Pteropus vampyrus	93.11	0.00e+00	695.00
IUUC-Rno-105079	Rattus norvegicus	91.74	0.00e+00	702.00
IUUC-Sha-107299	Sarcophilus harrisii	84.37	1.00e-161	563.00
IUUC-Sja-107829	Schizosaccharomyces japonicus	28.28	7.00e-21	94.70
IUUC-Spo-108122	Schizosaccharomyces pombe	29.82	3.00e-27	115.00
IUUC-Smo-109613	Selaginella moellendorffii	39.65	4.00e-51	194.00
IUUC-Sit-110263	Setaria italica	38.38	1.00e-56	213.00
IUUC-Sly-110988	Solanum lycopersicum	37.10	4.00e-53	201.00
IUUC-Stu-112713	Solanum tuberosum	37.46	4.00e-54	204.00
IUUC-Sbi-114617	Sorghum bicolor	37.32	2.00e-54	206.00
IUUC-Sre-115136	Sporisorium reilianum	30.11	7.00e-13	68.60
IUUC-Ssc-116268	Sus scrofa	92.72	0.00e+00	720.00
IUUC-Tgu-116720	Taeniopygia guttata	61.66	1.00e-88	321.00
IUUC-Tru-117977	Takifugu rubripes	66.07	2.00e-131	462.00
IUUC-Tsy-119121	Tarsius syrichta	92.27	2.00e-117	415.00
IUUC-Tni-119904	Tetraodon nigroviridis	68.75	1.00e-133	469.00
IUUC-Tca-121718	Theobroma cacao	40.64	2.00e-59	222.00
IUUC-Tae-124364	Triticum aestivum	37.54	7.00e-55	207.00
IUUC-Tme-126922	Tuber melanosporum	22.16	3.00e-12	67.00
IUUC-Tbe-127276	Tupaia belangeri	92.59	4.00e-155	540.00
IUUC-Uma-129505	Ustilago maydis	31.71	6.00e-13	68.90
IUUC-Vpa-130276	Vicugna pacos	94.82	4.00e-139	486.00
IUUC-Vvi-131377	Vitis vinifera	39.22	3.00e-57	217.00
IUUC-Xtr-132529	Xenopus tropicalis	68.71	7.00e-146	511.00
IUUC-Xma-134177	Xiphophorus maculatus	64.88	6.00e-124	437.00
IUUC-Yli-134665	Yarrowia lipolytica	23.66	2.00e-07	49.70

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence