iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sbi-114426

Ensembl Protein ID

Sb01g037980.1

UniProt Accession

C5WNE4; C5WNE4_SORBI

Genbank Protein ID

EER95008.1

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000760

Gene Name

SORBI_001G401400

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb01g037980	Sb01g037980.1	Sb01g037980.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.30e-08	33.7	8	40

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 6    vtcl..af.sd.tllvsGsdDgtikvWDlrtgv 34
           +++l  +f ++ ++l+ +s+Dg ikvWD  +g+
   Q: 8    IRDLltSFsPSaDFLALSSGDGRIKVWDAVRGR 40
           55643357878899**************77765 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MAPVAAPIRD LLTSFSPSAD FLALSSGDGR IKVWDAVRGR LQTEFADIPA VEAGAVPVAE 60
SKRGHLALDY TCMKWVQLSS KKKRKAGSSL IVLGTGSGDV LALDVAAGNW KWKVSDCHPG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAGCCCAAAC GGCAGAACGG CGCGCGAGGG TGAGTCGGGC TTTGGTTTGG CTGTCCGGGG 60
CGTCCGGCTC CCACCGCCGC TACCGCATTC CTCCACAAAA CCCTTCCTTC CTTCCTCCCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011047--Quinoprotein_ADH-like_supfam
IPR007148--SSU_processome_Utp12
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04003--Utp12
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0006364--P:rRNA processing

KEGG

sbi:SORBI_01g037980

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001865	Ailuropoda melanoleuca	22.10	2.00e-22	100.00
IUUC-Atr-002533	Amborella trichopoda	44.61	5.00e-133	467.00
IUUC-Apl-003242	Anas platyrhynchos	20.11	7.00e-16	78.20
IUUC-Aca-004607	Anolis carolinensis	21.82	2.00e-21	97.10
IUUC-Aly-006074	Arabidopsis lyrata	45.35	9.00e-119	419.00
IUUC-Ath-007222	Arabidopsis thaliana	45.73	8.00e-120	423.00
IUUC-Ame-011014	Astyanax mexicanus	22.55	2.00e-15	76.60
IUUC-Bta-012605	Bos taurus	21.57	1.00e-21	97.40
IUUC-Bdi-014072	Brachypodium distachyon	78.42	0.00e+00	919.00
IUUC-Bol-016255	Brassica oleracea	45.71	1.00e-143	503.00
IUUC-Bra-017484	Brassica rapa	46.79	1.00e-138	486.00
IUUC-Cja-019620	Callithrix jacchus	22.46	8.00e-24	104.00
IUUC-Cfa-020520	Canis familiaris	20.95	2.00e-21	96.70
IUUC-Cpo-022456	Cavia porcellus	21.56	1.00e-20	94.00
IUUC-Cho-024726	Choloepus hoffmanni	24.13	1.00e-20	94.00
IUUC-Cin-025761	Ciona intestinalis	22.54	6.00e-12	65.10
IUUC-Dre-028051	Danio rerio	27.88	2.00e-19	89.70
IUUC-Dno-030031	Dasypus novemcinctus	22.49	5.00e-23	102.00
IUUC-Dme-031653	Drosophila melanogaster	24.79	3.00e-21	96.30
IUUC-Eca-033243	Equus caballus	21.02	1.00e-14	74.30
IUUC-Fca-036009	Felis catus	21.42	9.00e-23	101.00
IUUC-Fal-037264	Ficedula albicollis	20.77	3.00e-14	72.40
IUUC-Gmo-039124	Gadus morhua	24.46	2.00e-22	100.00
IUUC-Gga-040862	Gallus gallus	23.58	5.00e-22	98.60
IUUC-Gac-041468	Gasterosteus aculeatus	26.49	7.00e-21	94.70
IUUC-Gma-042795	Glycine max	46.84	7.00e-134	470.00
IUUC-Ggo-044432	Gorilla gorilla	22.86	2.00e-24	107.00
IUUC-Hsa-047036	Homo sapiens	22.54	2.00e-24	106.00
IUUC-Hvu-047736	Hordeum vulgare	27.65	1.00e-22	99.40
IUUC-Itr-048644	Ictidomys tridecemlineatus	22.63	1.00e-24	107.00
IUUC-Lch-049553	Latimeria chalumnae	23.30	2.00e-20	93.20
IUUC-Laf-053462	Loxodonta africana	23.19	1.00e-24	107.00
IUUC-Mcc-055239	Macaca mulatta	22.46	4.00e-24	105.00
IUUC-Mtr-057977	Medicago truncatula	45.10	2.00e-137	481.00
IUUC-Mga-060079	Meleagris gallopavo	21.23	1.00e-13	70.50
IUUC-Mmr-061472	Microcebus murinus	22.91	4.00e-23	102.00
IUUC-Mdo-061972	Monodelphis domestica	21.92	1.00e-25	110.00
IUUC-Mmu-063354	Mus musculus	21.64	6.00e-25	108.00
IUUC-Mac-065064	Musa acuminata	58.16	1.00e-145	508.00
IUUC-Mpu-066877	Mustela putorius furo	21.34	5.00e-21	95.50
IUUC-Mlu-067476	Myotis lucifugus	22.08	1.00e-19	90.50
IUUC-Nle-069119	Nomascus leucogenys	22.76	2.00e-24	106.00
IUUC-Ont-072093	Oreochromis niloticus	23.61	5.00e-26	112.00
IUUC-Oan-072944	Ornithorhynchus anatinus	22.53	6.00e-18	84.70
IUUC-Ocu-074472	Oryctolagus cuniculus	26.62	2.00e-19	89.70
IUUC-Oba-075009	Oryza barthii	78.02	0.00e+00	905.00
IUUC-Ogl-077189	Oryza glaberrima	75.29	0.00e+00	893.00
IUUC-Oin-079064	Oryza indica	77.85	0.00e+00	901.00
IUUC-Opu-083604	Oryza punctata	76.44	0.00e+00	899.00
IUUC-Oru-084620	Oryza rufipogon	78.02	0.00e+00	904.00
IUUC-Osa-085345	Oryza sativa	78.02	0.00e+00	905.00
IUUC-Ola-086626	Oryzias latipes	23.26	1.00e-25	110.00
IUUC-Oga-087911	Otolemur garnettii	23.11	4.00e-24	105.00
IUUC-Ptr-091603	Pan troglodytes	22.70	1.00e-24	107.00
IUUC-Pan-092569	Papio anubis	22.46	4.00e-24	105.00
IUUC-Pma-094287	Petromyzon marinus	22.68	1.00e-19	90.50
IUUC-Ppa-095327	Physcomitrella patens	32.91	2.00e-80	292.00
IUUC-Pfo-097292	Poecilia formosa	26.51	8.00e-23	101.00
IUUC-Pab-097878	Pongo abelii	22.54	2.00e-24	106.00
IUUC-Pop-099418	Populus trichocarpa	49.83	3.00e-150	524.00
IUUC-Pca-100941	Procavia capensis	26.67	4.00e-15	75.90
IUUC-Ppe-101779	Prunus persica	49.26	5.00e-152	530.00
IUUC-Pva-102493	Pteropus vampyrus	26.73	4.00e-13	68.90
IUUC-Rno-105084	Rattus norvegicus	21.14	2.00e-22	99.80
IUUC-Sha-107486	Sarcophilus harrisii	21.88	8.00e-25	108.00
IUUC-Smo-108825	Selaginella moellendorffii	32.55	7.00e-66	244.00
IUUC-Sit-110825	Setaria italica	87.63	0.00e+00	1038.00
IUUC-Sly-111365	Solanum lycopersicum	47.01	4.00e-134	470.00
IUUC-Stu-112812	Solanum tuberosum	46.18	3.00e-131	461.00
IUUC-Sar-113326	Sorex araneus	25.19	2.00e-17	83.20
IUUC-Tgu-116726	Taeniopygia guttata	22.02	3.00e-22	99.40
IUUC-Tru-117848	Takifugu rubripes	23.92	8.00e-22	98.20
IUUC-Tni-120591	Tetraodon nigroviridis	24.73	7.00e-22	98.20
IUUC-Tca-121576	Theobroma cacao	50.33	1.00e-156	545.00
IUUC-Tae-125648	Triticum aestivum	77.18	0.00e+00	934.00
IUUC-Tbe-127832	Tupaia belangeri	21.26	2.00e-16	80.10
IUUC-Ttr-128812	Tursiops truncatus	21.06	5.00e-16	79.00
IUUC-Xma-133557	Xiphophorus maculatus	26.51	1.00e-23	103.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence